Comparing WP_013135189.1 NCBI__GCF_000092245.1:WP_013135189.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 20 (the maximum) hits to proteins with known functional sites (download)
3td9A Crystal structure of a leucine binding protein livk (tm1135) from thermotoga maritima msb8 at 1.90 a resolution
38% identity, 93% coverage: 27:375/375 of query aligns to 2:347/350 of 3td9A
4gnrA 1.0 angstrom resolution crystal structure of the branched-chain amino acid transporter substrate binding protein livj from streptococcus pneumoniae str. Canada mdr_19a in complex with isoleucine
32% identity, 94% coverage: 25:375/375 of query aligns to 1:348/348 of 4gnrA
1z18A Crystal structure analysis of periplasmic leu/ile/val-binding protein with bound valine (see paper)
29% identity, 87% coverage: 25:352/375 of query aligns to 1:323/344 of 1z18A
1z17A Crystal structure analysis of periplasmic leu/ile/val-binding protein with bound ligand isoleucine (see paper)
29% identity, 87% coverage: 25:352/375 of query aligns to 1:323/344 of 1z17A
1z16A Crystal structure analysis of periplasmic leu/ile/val-binding protein with bound leucine (see paper)
29% identity, 87% coverage: 25:352/375 of query aligns to 1:323/344 of 1z16A
4n0qB Crystal structure of an abc transporter, substrate-binding protein from brucella melitensis 16m in complex with l-leucine using a crystal grown in a crystal former (microlytic)
24% identity, 87% coverage: 26:352/375 of query aligns to 2:326/345 of 4n0qB
1uskA L-leucine-binding protein with leucine bound (see paper)
29% identity, 68% coverage: 26:279/375 of query aligns to 2:257/345 of 1uskA
Sites not aligning to the query:
1usiA L-leucine-binding protein with phenylalanine bound (see paper)
29% identity, 68% coverage: 26:279/375 of query aligns to 2:257/345 of 1usiA
Sites not aligning to the query:
4eygB Crystal structure of solute binding protein of abc transporter from rhodopseudomonas palustris bisb5 in complex with vanillic acid (see paper)
25% identity, 82% coverage: 28:333/375 of query aligns to 5:328/364 of 4eygB
3ip9A Structure of atu2422-gaba receptor in complex with gaba (see paper)
28% identity, 65% coverage: 27:269/375 of query aligns to 5:247/348 of 3ip9A
Sites not aligning to the query:
3ip7A Structure of atu2422-gaba receptor in complex with valine (see paper)
28% identity, 65% coverage: 27:269/375 of query aligns to 5:247/348 of 3ip7A
Sites not aligning to the query:
3ip6A Structure of atu2422-gaba receptor in complex with proline (see paper)
28% identity, 65% coverage: 27:269/375 of query aligns to 5:247/348 of 3ip6A
Sites not aligning to the query:
3ip5A Structure of atu2422-gaba receptor in complex with alanine (see paper)
28% identity, 65% coverage: 27:269/375 of query aligns to 5:247/348 of 3ip5A
3ipcA Structure of atu2422-gaba f77a mutant receptor in complex with leucine (see paper)
28% identity, 65% coverage: 27:269/375 of query aligns to 5:247/348 of 3ipcA
4dqdA The crystal structure of a transporter in complex with 3-phenylpyruvic acid (see paper)
24% identity, 91% coverage: 26:365/375 of query aligns to 2:355/361 of 4dqdA
3sg0A The crystal structure of an extracellular ligand-binding receptor from rhodopseudomonas palustris haa2 (see paper)
24% identity, 91% coverage: 26:365/375 of query aligns to 3:356/361 of 3sg0A
4rdcA The crystal structure of a solute-binding protein (n280d mutant) from anabaena variabilis atcc 29413 in complex with proline
26% identity, 60% coverage: 27:250/375 of query aligns to 3:230/364 of 4rdcA
Sites not aligning to the query:
4qymA The crystal structure of a solute-binding protein (n280d mutant) from anabaena variabilis atcc 29413 in complex with methionine
26% identity, 60% coverage: 27:250/375 of query aligns to 3:230/364 of 4qymA
Sites not aligning to the query:
4otzA The crystal structure of a solute-binding protein (n280d mutant) from anabaena variabilis atcc 29413 in complex with cystein
26% identity, 60% coverage: 27:250/375 of query aligns to 3:230/364 of 4otzA
Sites not aligning to the query:
4og2A The crystal structure of a solute-binding protein (n280d mutant) from anabaena variabilis atcc 29413 in complex with leucine
26% identity, 60% coverage: 27:250/375 of query aligns to 3:230/364 of 4og2A
Sites not aligning to the query:
>WP_013135189.1 NCBI__GCF_000092245.1:WP_013135189.1
MNISKKILGLSVATLLSCSSLLSAKEIKIGAVMPMSGPLAAYGQVTDLGVKLAHKLQPKL
KNGDTIKIVLLDNKGDKVETANATTRLISSDKVVAILGALTSSNTAQTIAIADKKEIPVI
AAVATGDKLTAKREFANRVCFSNAFQGEVVANYAISKGYKTAVVVVDQAQVYSLGLAKAF
QKKFKSKGGKILKKIKITSGDKDFKAVVSQIKQINPDFMFLPLYHPEASMIARQSKQLGL
DKPMFSGDGVANQTFIDLGGNAVEGYMFTDFFDYSNPPSKTSADFVAFHTKETGEKEMNS
FTALGADTYNVLIAAMNRCEDPTNSICINKEIKKTTNFDGVSGKITIDKDGNATRSAVIK
EIKNGKAVFKAIVNP
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory