SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_013136488.1 NCBI__GCF_000092245.1:WP_013136488.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 2 hits to proteins with known functional sites (download)

P70994 2-hydroxymuconate tautomerase; (2Z,4E)-2-hydroxyhexa-2,4-dienedioate keto-enol isomerase; 4-oxalocrotonate tautomerase; 4-OT; EC 5.3.2.6 from Bacillus subtilis (strain 168) (see paper)
39% identity, 90% coverage: 1:64/71 of query aligns to 1:61/62 of P70994

query
sites
P70994
M
 
M
P
|
P
Y
 
Y
I
 
V
N
 
T
V
 
V
K
 
K
M
 
M
T
 
L
H
 
E
E
 
-
D
 
-
A
 
-
G
 
G
A
x
R
T
 
T
K
 
D
E
 
E
Q
 
Q
K
 
K
E
 
R
K
 
N
L
 
L
A
 
V
K
 
E
G
 
K
I
 
V
T
 
T
E
 
E
L
 
A
F
 
V
S
 
K
E
 
E
I
 
T
F
 
T
G
 
G
R
 
A
G
 
S
A
 
E
S
 
E
S
 
K
A
 
I
V
 
V
I
 
V
L
 
F
I
 
I
E
 
E
E
 
E
V
 
M
S
 
R
T
 
K
D
 
D
N
 
H
Y
 
Y
A
 
A
I
 
V
G
 
A
G
 
G
K
 
K
T
 
R
V
 
L
T
 
S
N
 
D
I
 
M

2opaA Ywhb binary complex with 2-fluoro-p-hydroxycinnamate
38% identity, 89% coverage: 2:64/71 of query aligns to 1:60/61 of 2opaA

query
sites
2opaA
P
 
P
Y
 
Y
I
 
V
N
 
T
V
 
V
K
 
K
M
|
M
T
 
L
H
 
E
E
 
-
D
 
-
A
 
-
G
 
G
A
x
R
T
 
T
K
 
D
E
 
E
Q
 
Q
K
 
K
E
 
R
K
 
N
L
 
L
A
 
V
K
 
E
G
 
K
I
 
V
T
 
T
E
 
E
L
 
A
F
 
V
S
 
K
E
 
E
I
 
T
F
 
T
G
 
G
R
 
A
G
 
S
A
 
E
S
 
E
S
 
K
A
 
I
V
|
V
I
 
V
L
 
F
I
 
I
E
 
E
E
 
E
V
 
M
S
 
R
T
 
K
D
 
D
N
 
H
Y
|
Y
A
 
A
I
 
V
G
 
A
G
 
G
K
 
K
T
 
R
V
 
L
T
 
S
N
 
D
I
 
M

Sites not aligning to the query:

Query Sequence

>WP_013136488.1 NCBI__GCF_000092245.1:WP_013136488.1
MPYINVKMTHEDAGATKEQKEKLAKGITELFSEIFGRGASSAVILIEEVSTDNYAIGGKT
VTNIREEQKKN

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory