SitesBLAST
Comparing WP_013257433.1 NCBI__GCF_000143965.1:WP_013257433.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 20 (the maximum) hits to proteins with known functional sites (download)
3du4A Crystal structure of 7-keto-8-aminopelargonic acid bound 7,8- diaminopelargonic acid synthase in bacillus subtilis (see paper)
47% identity, 98% coverage: 6:441/445 of query aligns to 4:444/448 of 3du4A
- active site: F17 (= F19), Y146 (= Y149), E217 (= E214), D251 (= D248), A254 (= A251), K280 (= K277), A417 (≠ V414)
- binding 7-keto-8-aminopelargonic acid: L82 (= L85), Y146 (= Y149), G315 (= G312), S317 (≠ T314), R410 (= R407)
- binding pyridoxal-5'-phosphate: S112 (= S115), G113 (= G116), A114 (≠ S117), Y146 (= Y149), H147 (= H150), E217 (= E214), D251 (= D248), V253 (= V250), A254 (= A251), K280 (= K277), H316 (= H313), S317 (≠ T314)
P53555 L-Lysine--8-amino-7-oxononanoate transaminase; 7,8-diamino-pelargonic acid aminotransferase; DAPA AT; DAPA aminotransferase; 7,8-diaminononanoate synthase; DANS; Diaminopelargonic acid synthase; L-Lysine--8-amino-7-oxononanoate aminotransferase; EC 2.6.1.105 from Bacillus subtilis (strain 168) (see paper)
47% identity, 98% coverage: 6:441/445 of query aligns to 4:444/448 of P53555
- GA 113:114 (≠ GS 116:117) binding pyridoxal 5'-phosphate
- Y146 (= Y149) binding substrate
- K280 (= K277) modified: N6-(pyridoxal phosphate)lysine
- G315 (= G312) binding substrate
- HS 316:317 (≠ HT 313:314) binding pyridoxal 5'-phosphate
- R410 (= R407) binding substrate
6zhkA Crystal structure of adenosylmethionine-8-amino-7-oxononanoate aminotransferase from methanocaldococcus jannaschii dsm 2661
44% identity, 97% coverage: 11:440/445 of query aligns to 9:436/438 of 6zhkA
6wnnA Bacillus subtilis bioa in complex with amino donor l-lys
44% identity, 98% coverage: 6:441/445 of query aligns to 1:416/420 of 6wnnA
- active site: F14 (= F19), Y143 (= Y149), D223 (= D248), K252 (= K277)
- binding (2S)-2-amino-6-[[3-hydroxy-2-methyl-5-(phosphonooxymethyl)pyridin-4-yl]methylideneamino]hexanoic acid: F14 (= F19), W51 (= W57), S109 (= S115), G110 (= G116), A111 (≠ S117), Y143 (= Y149), H144 (= H150), D223 (= D248), V225 (= V250), K252 (= K277), R382 (= R407)
- binding 4'-deoxy-4'-aminopyridoxal-5'-phosphate: H288 (= H313), S289 (≠ T314)
3dodA Crystal structure of plp bound 7,8-diaminopelargonic acid synthase in bacillus subtilis (see paper)
43% identity, 98% coverage: 6:441/445 of query aligns to 2:413/417 of 3dodA
- active site: F15 (= F19), E186 (= E214), D220 (= D248), A223 (= A251), K249 (= K277), A386 (≠ V414)
- binding pyridoxal-5'-phosphate: W52 (= W57), S110 (= S115), G111 (= G116), A112 (≠ S117), D220 (= D248), V222 (= V250), K249 (= K277), H285 (= H313), S286 (≠ T314)
6io1B Crystal structure of a novel thermostable (s)-enantioselective omega- transaminase from thermomicrobium roseum (see paper)
39% identity, 99% coverage: 3:442/445 of query aligns to 4:448/448 of 6io1B
- active site: L20 (≠ F19), Y151 (= Y149), D257 (= D248), K286 (= K277)
- binding 4'-deoxy-4'-aminopyridoxal-5'-phosphate: G117 (≠ S115), G118 (= G116), A119 (≠ S117), N122 (≠ V120), Y151 (= Y149), H152 (= H150), D257 (= D248), V259 (= V250), I260 (≠ A251), K286 (= K277)
6ed7A Crystal structure of 7,8-diaminopelargonic acid synthase bound to inhibitor mac13772
38% identity, 96% coverage: 15:441/445 of query aligns to 13:425/429 of 6ed7A
- active site: Y17 (≠ F19), Y144 (= Y149), D245 (= D248), K274 (= K277)
- binding 2-[(2-nitrophenyl)sulfanyl]acetohydrazide: Y17 (≠ F19), W52 (≠ L56), W52 (≠ L56), Y144 (= Y149), D147 (= D152), A217 (= A220), K274 (= K277), R391 (= R407), F393 (≠ L409), F393 (≠ L409)
- binding pyridoxal-5'-phosphate: G112 (= G116), S113 (= S117), Y144 (= Y149), H145 (= H150), D245 (= D248), I247 (≠ V250), K274 (= K277)
P12995 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; 7,8-diamino-pelargonic acid aminotransferase; DAPA AT; DAPA aminotransferase; 7,8-diaminononanoate synthase; DANS; Diaminopelargonic acid synthase; EC 2.6.1.62 from Escherichia coli (strain K12) (see 4 papers)
38% identity, 96% coverage: 15:441/445 of query aligns to 13:425/429 of P12995
- Y17 (≠ F19) mutation to F: Severely reduces the aminotransferase activity.
- W52 (≠ L56) binding substrate
- GS 112:113 (= GS 116:117) binding pyridoxal 5'-phosphate
- Y144 (= Y149) mutation to F: Severely reduces the aminotransferase activity.
- D147 (= D152) mutation to N: Loss of aminotransferase activity.
- D245 (= D248) binding pyridoxal 5'-phosphate
- R253 (= R256) mutation to A: Has only a small effect on the rate of reaction with DAPA.; mutation to K: Increases aminotransferase activity toward SAM.; mutation to M: Loss of aminotransferase activity.; mutation to Q: Increases aminotransferase activity toward SAM.
- K274 (= K277) binding substrate; modified: N6-(pyridoxal phosphate)lysine
- G307 (= G312) binding substrate
- PT 308:309 (≠ HT 313:314) binding pyridoxal 5'-phosphate
- R391 (= R407) binding substrate; mutation to A: Reduces aminotransferase activity.
5lh9D Amine transaminase crystal structure from an uncultivated pseudomonas species in the plp-bound (internal aldimine) form
37% identity, 94% coverage: 15:433/445 of query aligns to 12:441/449 of 5lh9D
- active site: Y148 (= Y149), D255 (= D248), K284 (= K277), T321 (= T314)
- binding pyridoxal-5'-phosphate: G115 (= G116), S116 (= S117), Y148 (= Y149), H149 (= H150), G150 (= G151), E222 (= E214), D255 (= D248), V257 (= V250), K284 (= K277)
5lhaA Amine transaminase crystal structure from an uncultivated pseudomonas species in the pmp-bound form
37% identity, 94% coverage: 15:433/445 of query aligns to 10:439/447 of 5lhaA
- active site: Y146 (= Y149), D253 (= D248), K282 (= K277), T319 (= T314)
- binding 4'-deoxy-4'-aminopyridoxal-5'-phosphate: G113 (= G116), S114 (= S117), Y146 (= Y149), H147 (= H150), G148 (= G151), E220 (= E214), D253 (= D248), K282 (= K277), Y318 (≠ H313), T319 (= T314)
Q9A3Q9 Omega-aminotransferase; Beta-alanine--pyruvate aminotransferase; EC 2.6.1.-; EC 2.6.1.18 from Caulobacter vibrioides (strain ATCC 19089 / CIP 103742 / CB 15) (Caulobacter crescentus) (see paper)
35% identity, 96% coverage: 10:437/445 of query aligns to 7:435/439 of Q9A3Q9
- V227 (≠ M223) mutation to G: Decreases activity toward 3-aminobutanoate by 2-fold. Increases activity toward the aromatic beta-amino acid 3-amino-3-phenylpropanoate by 2-fold.
- R260 (= R256) mutation to L: Decreases activity toward 3-aminobutanoate by 30-fold.
- N285 (≠ G281) mutation to A: Decreases activity toward 3-aminobutanoate by 4-fold. Increases activity toward the aromatic beta-amino acid 3-amino-3-phenylpropanoate by 3-fold.
1mlzA Crystal structure of 7,8-diaminopelargonic acid synthase in complex with the trans-isomer of amiclenomycin. (see paper)
38% identity, 96% coverage: 17:441/445 of query aligns to 15:424/427 of 1mlzA
- active site: Y17 (≠ F19), Y144 (= Y149), E210 (= E214), D244 (= D248), A247 (= A251), K273 (= K277), Y397 (≠ V414)
- binding pyridoxal-5'-phosphate: G112 (= G116), S113 (= S117), Y144 (= Y149), H145 (= H150), D244 (= D248), I246 (≠ V250), K273 (= K277), P307 (≠ H313), T308 (= T314)
- binding trans-amiclenomycin: W52 (≠ L56), W53 (= W57), Y144 (= Y149), K273 (= K277), R390 (= R407), F392 (≠ L409)
1mlyA Crystal structure of 7,8-diaminopelargonic acid synthase in complex with the cis isomer of amiclenomycin (see paper)
38% identity, 96% coverage: 17:441/445 of query aligns to 15:424/427 of 1mlyA
- active site: Y17 (≠ F19), Y144 (= Y149), E210 (= E214), D244 (= D248), A247 (= A251), K273 (= K277), Y397 (≠ V414)
- binding cis-amiclenomycin: W52 (≠ L56), W53 (= W57), K273 (= K277), R390 (= R407), F392 (≠ L409)
- binding pyridoxal-5'-phosphate: G112 (= G116), S113 (= S117), Y144 (= Y149), H145 (= H150), D244 (= D248), I246 (≠ V250), K273 (= K277), P307 (≠ H313), T308 (= T314)
1dtyA Crystal structure of adenosylmethionine-8-amino-7-oxonanoate aminotransferase with pyridoxal phosphate cofactor.
37% identity, 96% coverage: 15:441/445 of query aligns to 13:425/429 of 1dtyA
- active site: Y17 (≠ F19), Y144 (= Y149), E211 (= E214), D245 (= D248), A248 (= A251), K274 (= K277), Y398 (≠ V414)
- binding pyridoxal-5'-phosphate: G112 (= G116), S113 (= S117), Y144 (= Y149), H145 (= H150), D245 (= D248), I247 (≠ V250), K274 (= K277)
1qj3A Crystal structure of 7,8-diaminopelargonic acid synthase in complex with 7-keto-8-aminopelargonic acid (see paper)
38% identity, 96% coverage: 17:441/445 of query aligns to 15:413/416 of 1qj3A
- active site: Y17 (≠ F19), Y144 (= Y149), E201 (= E214), D235 (= D248), A238 (= A251), K264 (= K277), Y386 (≠ V414)
- binding 7-keto-8-aminopelargonic acid: Y17 (≠ F19), W52 (≠ L56), Y144 (= Y149), K264 (= K277), R379 (= R407), F381 (≠ L409)
- binding pyridoxal-5'-phosphate: G112 (= G116), S113 (= S117), Y144 (= Y149), H145 (= H150), G146 (= G151), D235 (= D248), I237 (≠ V250), A238 (= A251), K264 (= K277)
4w1vA Crystal structure of 7,8-diaminopelargonic acid synthase (bioa) from mycobacterium tuberculosis, complexed with a thiazole inhibitor (see paper)
38% identity, 95% coverage: 6:426/445 of query aligns to 5:409/425 of 4w1vA
- active site: Y18 (≠ F19), Y147 (= Y149), E210 (= E214), D244 (= D248), A247 (= A251), K273 (= K277), Y397 (≠ V414)
- binding dimethyl (2R)-5-(3-fluorophenyl)-1H-pyrrolo[1,2-c][1,3]thiazole-6,7-dicarboxylate 2-oxide: P17 (= P18), Y18 (≠ F19), W54 (≠ L56), M81 (≠ T83), G83 (≠ L85), Y147 (= Y149), G306 (= G312), P307 (≠ H313), T308 (= T314), F392 (≠ L409)
- binding pyridoxal-5'-phosphate: G114 (= G116), S115 (= S117), Y147 (= Y149), H148 (= H150), E210 (= E214), D244 (= D248), I246 (≠ V250), K273 (= K277)
4cxrA Mycobaterium tuberculosis transaminase bioa complexed with 1-(1,3- benzothiazol-2-yl)methanamine (see paper)
38% identity, 95% coverage: 6:426/445 of query aligns to 5:409/425 of 4cxrA
- active site: Y18 (≠ F19), Y147 (= Y149), E210 (= E214), D244 (= D248), A247 (= A251), K273 (= K277), Y397 (≠ V414)
- binding 1-(1,3-benzothiazol-2-yl)methanamine: Y18 (≠ F19), W54 (≠ L56), W55 (= W57), A216 (= A220)
- binding pyridoxal-5'-phosphate: G114 (= G116), S115 (= S117), Y147 (= Y149), H148 (= H150), E210 (= E214), D244 (= D248), I246 (≠ V250), K273 (= K277), P307 (≠ H313), T308 (= T314)
4cxqA Mycobaterium tuberculosis transaminase bioa complexed with substrate kapa (see paper)
38% identity, 95% coverage: 6:426/445 of query aligns to 5:411/427 of 4cxqA
- active site: Y18 (≠ F19), Y149 (= Y149), E212 (= E214), D246 (= D248), A249 (= A251), K275 (= K277), Y399 (≠ V414)
- binding 7-keto-8-aminopelargonic acid: W56 (≠ L56), Y149 (= Y149), G308 (= G312), T310 (= T314), R392 (= R407)
- binding pyridoxal-5'-phosphate: G116 (= G116), S117 (= S117), Y149 (= Y149), H150 (= H150), G151 (= G151), E212 (= E214), D246 (= D248), I248 (≠ V250), K275 (= K277), P309 (≠ H313), T310 (= T314)
6ge8A Crystal structure of mycobacterium tuberculosis bioa
38% identity, 95% coverage: 6:426/445 of query aligns to 6:407/422 of 6ge8A
- binding [(2~{S})-3-(1~{H}-indol-3-yl)-1-[(2~{E})-2-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylidene]hydrazinyl]-1-oxidanylidene-propan-2-yl]azanium: Y19 (≠ F19), W58 (≠ L56), G118 (= G116), S119 (= S117), Y151 (= Y149), H152 (= H150), E208 (= E214), D242 (= D248), I244 (≠ V250), K271 (= K277), P305 (≠ H313), T306 (= T314)
3tfuA Crystal structure of 7,8-diaminopelargonic acid synthase (bioa) from mycobacterium tuberculosis, post-reaction complex with a 3,6- dihydropyrid-2-one heterocycle inhibitor (see paper)
38% identity, 95% coverage: 6:426/445 of query aligns to 6:403/417 of 3tfuA
- active site: Y19 (≠ F19), Y151 (= Y149), E204 (= E214), D238 (= D248), A241 (= A251), K267 (= K277), Y391 (≠ V414)
- binding [5-hydroxy-4-({[6-(3-hydroxypropyl)-2-oxo-1,2-dihydropyridin-3-yl]amino}methyl)-6-methylpyridin-3-yl]methyl dihydrogen phosphate: W58 (≠ L56), G118 (= G116), S119 (= S117), Y151 (= Y149), H152 (= H150), D238 (= D248), I240 (≠ V250), K267 (= K277), P301 (≠ H313), T302 (= T314)
Query Sequence
>WP_013257433.1 NCBI__GCF_000143965.1:WP_013257433.1
MSNAAEIVQKDLACLWHPFTQQKIWPSEPPLVISGGQGNWLVDIDGKRYFDGVSSLWVTV
HGHGEPAINQAIKEQVEALDHSTMLGLTHPKAALLAAELARLTPPSLSRVFFSESGSTAV
EIALKIAYQYWQLKGQSKKRTFVSLAEAYHGDTIGAVSIGGIELFHEVYRPLLFAKHTIA
QPNKNKPGSAERSVADLARVLAEHAEEICALVIEPRVQGAAGMIIQPDGYLSTVCRMAHE
AGVLVVADEVATGFGRTGAMFACQLEGVCPDLMALGKGLTGGVLPLAATMASEEIYEAFL
GEFDEFRHFFHGHTYTGNPIACAAALANLALMQSRDILANVAARAAQLARGLAELARLDH
VVDVRQQGMMCGVELAADKASGLAYAPGRRMGHQVIMAARRRGVIIRPLGDTVVLMPPLS
SSEQEIAFLLEVVGQAIVEATEEGA
Or try a new SitesBLAST search
SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory