Comparing WP_013258530.1 NCBI__GCF_000143965.1:WP_013258530.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
1g6hA Crystal structure of the adp conformation of mj1267, an atp-binding cassette of an abc transporter (see paper)
37% identity, 96% coverage: 1:255/267 of query aligns to 2:254/254 of 1g6hA
1g9xB Characterization of the twinning structure of mj1267, an atp-binding cassette of an abc transporter (see paper)
37% identity, 95% coverage: 1:254/267 of query aligns to 2:253/253 of 1g9xB
1oxvD Crystal structure of glcv, the abc-atpase of the glucose abc transporter from sulfolobus solfataricus (see paper)
35% identity, 90% coverage: 6:246/267 of query aligns to 6:232/353 of 1oxvD
1oxvA Crystal structure of glcv, the abc-atpase of the glucose abc transporter from sulfolobus solfataricus (see paper)
35% identity, 90% coverage: 6:246/267 of query aligns to 6:232/353 of 1oxvA
1oxuA Crystal structure of glcv, the abc-atpase of the glucose abc transporter from sulfolobus solfataricus (see paper)
35% identity, 90% coverage: 6:246/267 of query aligns to 6:232/353 of 1oxuA
Q97UY8 Glucose import ATP-binding protein GlcV; EC 7.5.2.- from Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) (Sulfolobus solfataricus) (see paper)
35% identity, 90% coverage: 6:246/267 of query aligns to 6:232/353 of Q97UY8
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
32% identity, 92% coverage: 2:246/267 of query aligns to 1:227/241 of 4u00A
1ji0A Crystal structure analysis of the abc transporter from thermotoga maritima
29% identity, 94% coverage: 3:254/267 of query aligns to 6:238/240 of 1ji0A
6mjpA Lptb(e163q)fgc from vibrio cholerae (see paper)
27% identity, 95% coverage: 3:256/267 of query aligns to 2:237/240 of 6mjpA
1g291 Malk (see paper)
30% identity, 91% coverage: 12:254/267 of query aligns to 12:241/372 of 1g291
Sites not aligning to the query:
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
30% identity, 86% coverage: 13:242/267 of query aligns to 11:223/240 of 4ymuJ
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
30% identity, 91% coverage: 3:246/267 of query aligns to 1:232/343 of P30750
Sites not aligning to the query:
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
29% identity, 91% coverage: 3:246/267 of query aligns to 2:233/344 of 6cvlD
P04983 Ribose import ATP-binding protein RbsA; EC 7.5.2.7 from Escherichia coli (strain K12) (see paper)
28% identity, 87% coverage: 3:235/267 of query aligns to 4:221/501 of P04983
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
29% identity, 91% coverage: 3:246/267 of query aligns to 2:233/344 of 3tuzC
Sites not aligning to the query:
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
29% identity, 91% coverage: 3:246/267 of query aligns to 2:233/344 of 3tuiC
7d0aB Acinetobacter mlafedb complex in adp-vanadate trapped vclose conformation (see paper)
29% identity, 90% coverage: 3:243/267 of query aligns to 4:229/263 of 7d0aB
7d08B Acinetobacter mlafedb complex in atp-bound vtrans1 conformation (see paper)
29% identity, 90% coverage: 3:243/267 of query aligns to 4:229/263 of 7d08B
6z5uK Cryo-em structure of the a. Baumannii mlabdef complex bound to appnhp (see paper)
29% identity, 90% coverage: 3:243/267 of query aligns to 2:227/253 of 6z5uK
3d31A Modbc from methanosarcina acetivorans (see paper)
33% identity, 95% coverage: 3:256/267 of query aligns to 1:231/348 of 3d31A
Sites not aligning to the query:
>WP_013258530.1 NCBI__GCF_000143965.1:WP_013258530.1
MPIFEIKNLSMVFGGLTALDNVSLSVEKGSTTAVIGPNGAGKTTLFNCISGLYKPSSGEV
VFKGQRLTDKKPHQIANLGVGRTFQNIELFNNMTTLENLMLGRHMHMKTGLWASCTWWRR
GSKACRLEIDHRARVERIIDFLDLQSARNRFVGGLPYGTQKVVELGRALATEPELLLLDE
PVAGMNLEEKQDLLFWLQDIKDQFGVTLLIIEHDMRVVMEISDKVMVLNYGKPIAYGAPD
EVQKNPDVLAAYIGDEQAAAQAGGQHA
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory