SitesBLAST
Comparing WP_013259993.1 NCBI__GCF_000143965.1:WP_013259993.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 7 hits to proteins with known functional sites (download)
5c4iE Structure of an oxalate oxidoreductase (see paper)
31% identity, 83% coverage: 21:171/182 of query aligns to 34:207/312 of 5c4iE
Sites not aligning to the query:
- binding iron/sulfur cluster: 258, 259, 260, 261, 262, 264, 268, 272, 287, 288, 289, 290, 291, 293, 297, 298, 299, 302
5exdH Crystal structure of oxalate oxidoreductase from moorella thermoacetica bound with carboxy-di-oxido-methyl-tpp (coom-tpp) intermediate (see paper)
31% identity, 83% coverage: 21:171/182 of query aligns to 31:184/291 of 5exdH
Sites not aligning to the query:
- binding iron/sulfur cluster: 230, 237, 238, 239, 240, 241, 243, 247, 259, 266, 267, 268, 269, 270, 272, 276, 278, 281
6ciqA Pyruvate:ferredoxin oxidoreductase from moorella thermoacetica with coenzyme a bound (see paper)
25% identity, 95% coverage: 4:176/182 of query aligns to 416:606/1169 of 6ciqA
Sites not aligning to the query:
- active site: 28, 61, 111, 999
- binding coenzyme a: 28, 999
- binding magnesium ion: 966, 994, 996
- binding iron/sulfur cluster: 678, 680, 685, 686, 688, 689, 691, 695, 696, 700, 734, 741, 742, 743, 744, 745, 747, 751, 757, 807, 808, 811, 813, 836, 998, 1074, 1075
- binding thiamine diphosphate: 26, 27, 61, 85, 813, 835, 836, 865, 965, 966, 967, 996, 997, 998, 999, 1000
6cinB Crystal structure of pyruvate:ferredoxin oxidoreductase from moorella thermoacetica (see paper)
25% identity, 95% coverage: 4:176/182 of query aligns to 416:606/1169 of 6cinB
Sites not aligning to the query:
- active site: 28, 61, 111, 999
- binding magnesium ion: 966, 994, 996
- binding iron/sulfur cluster: 678, 685, 686, 687, 688, 689, 691, 695, 700, 741, 742, 743, 744, 745, 746, 747, 751, 752, 757, 758, 807, 808, 811, 813, 836, 998, 1074, 1075
- binding thiamine diphosphate: 26, 27, 61, 834, 835, 836, 865, 965, 966, 967, 996, 997, 998, 999, 1000
6cioA Pyruvate:ferredoxin oxidoreductase from moorella thermoacetica with lactyl-tpp bound (see paper)
25% identity, 95% coverage: 4:176/182 of query aligns to 416:606/1164 of 6cioA
Sites not aligning to the query:
- active site: 28, 61, 111, 999
- binding magnesium ion: 966, 994, 996
- binding iron/sulfur cluster: 678, 680, 685, 686, 688, 689, 691, 695, 699, 700, 734, 741, 742, 744, 745, 747, 751, 757, 758, 807, 808, 811, 813, 836, 1074, 1075
- binding 3-[(4-amino-2-methylpyrimidin-5-yl)methyl]-2-(1-carboxy-1-hydroxyethyl)-5-(2-{[hydroxy(phosphonooxy)phosphoryl]oxy}ethyl)-4-methyl-1,3-thiazol-3-ium: 26, 27, 28, 61, 85, 111, 813, 834, 835, 836, 865, 965, 966, 967, 996, 997, 998, 999, 1000
6cipA Pyruvate:ferredoxin oxidoreductase from moorella thermoacetica with acetyl-tpp bound (see paper)
25% identity, 95% coverage: 4:176/182 of query aligns to 416:606/1165 of 6cipA
Sites not aligning to the query:
- active site: 28, 61, 111, 999
- binding 2-acetyl-thiamine diphosphate: 27, 61, 85, 111, 813, 834, 835, 836, 865, 965, 966, 967, 996, 998, 999
- binding magnesium ion: 966, 994, 996
- binding iron/sulfur cluster: 678, 680, 685, 686, 688, 689, 691, 695, 699, 700, 734, 741, 742, 744, 745, 747, 751, 757, 758, 807, 808, 811, 813, 836, 998, 1074
Q2RMD6 Pyruvate:ferredoxin oxidoreductase; PFOR; Pyruvate synthase; EC 1.2.7.1 from Moorella thermoacetica (strain ATCC 39073 / JCM 9320) (see paper)
25% identity, 95% coverage: 4:176/182 of query aligns to 417:607/1171 of Q2RMD6
- SDGTV 424:428 (≠ GQGAV 11:15) binding CoA
- K456 (≠ R42) binding CoA
- N556 (= N133) binding CoA
- N598 (= N167) binding CoA
Sites not aligning to the query:
- 686 binding [4Fe-4S] cluster
- 689 binding [4Fe-4S] cluster
- 692 binding [4Fe-4S] cluster
- 696 binding [4Fe-4S] cluster
- 742 binding [4Fe-4S] cluster
- 745 binding [4Fe-4S] cluster
- 748 binding [4Fe-4S] cluster
- 752 binding [4Fe-4S] cluster
- 809 binding [4Fe-4S] cluster
- 812 binding [4Fe-4S] cluster
- 814 binding thiamine diphosphate
- 837 binding [4Fe-4S] cluster; binding thiamine diphosphate
- 967 binding Mg(2+)
- 967:969 binding thiamine diphosphate
- 995 binding Mg(2+)
- 995:1000 binding thiamine diphosphate
- 997 binding Mg(2+)
- 1075 binding [4Fe-4S] cluster
Query Sequence
>WP_013259993.1 NCBI__GCF_000143965.1:WP_013259993.1
MIEVRFHGRGGQGAVTSAELMAQAAIAEGKYAQAFPSFGPERRGAPLQAFLRISDEQIRL
REKIYEPDVVVVLDPSLLATGNVNAGLKPDGVLVVNSAKNVEAVRGECQFNGRTAIVDAS
KIAEEELGVPITNTTMLGALLKAAGHVDLKAIEKPLAARFGRIAEKNLRALKRAYEETVI
EE
Or try a new SitesBLAST search
SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory