SitesBLAST
Comparing WP_013419018.1 NCBI__GCF_000166055.1:WP_013419018.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 20 (the maximum) hits to proteins with known functional sites (download)
P69874 Spermidine/putrescine import ATP-binding protein PotA; EC 7.6.2.11 from Escherichia coli (strain K12) (see 3 papers)
53% identity, 65% coverage: 8:239/358 of query aligns to 23:250/378 of P69874
- C26 (≠ R11) mutation to A: Lower ATPase activity and transport efficiency.
- F27 (= F12) mutation to L: Lower ATPase activity and transport efficiency.
- F45 (≠ L30) mutation to L: Lower ATPase activity and transport efficiency.
- C54 (≠ S39) mutation to T: Loss of ATPase activity and transport.
- L60 (= L45) mutation to F: Lower ATPase activity and transport efficiency.
- L76 (≠ F61) mutation to P: Lower ATPase activity and transport efficiency.
- V135 (= V124) mutation to M: Loss of ATPase activity and transport.
- D172 (= D161) mutation to N: Loss of ATPase activity and transport.
Sites not aligning to the query:
- 276 C→A: Lower ATPase activity and transport efficiency.
- 297 mutation E->K,D: Lower ATPase activity and transport efficiency.; E→Q: Loss of ATPase activity and transport.
1vciA Crystal structure of the atp-binding cassette of multisugar transporter from pyrococcus horikoshii ot3 complexed with atp (see paper)
41% identity, 93% coverage: 1:332/358 of query aligns to 5:329/353 of 1vciA
2d62A Crystal structure of multiple sugar binding transport atp- binding protein
38% identity, 95% coverage: 7:345/358 of query aligns to 11:364/375 of 2d62A
1g291 Malk (see paper)
41% identity, 81% coverage: 7:297/358 of query aligns to 8:313/372 of 1g291
- binding magnesium ion: D69 (≠ N68), E71 (vs. gap), K72 (vs. gap), K79 (≠ R72), D80 (≠ K73), E292 (≠ H278), D293 (= D279)
- binding pyrophosphate 2-: S38 (= S37), G39 (= G38), C40 (≠ S39), G41 (= G40), K42 (= K41), T43 (= T42), T44 (= T43)
Sites not aligning to the query:
P19566 Maltose/maltodextrin import ATP-binding protein MalK; EC 7.5.2.1 from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see paper)
36% identity, 97% coverage: 2:350/358 of query aligns to 3:359/369 of P19566
- L86 (= L85) mutation to F: Loss of transport. No effect on ATP-binding activity but decrease in ATP hydrolysis. Retains repressor activity.
- P160 (= P163) mutation to L: Loss of transport. No effect on ATP-binding activity but decrease in ATP hydrolysis. Retains repressor activity.
- D165 (= D168) mutation to N: Loss of transport. No effect on ATP-binding activity but decrease in ATP hydrolysis. Retains repressor activity.
- E306 (≠ R298) mutation to K: Loss of transport. No effect on ATP-binding and ATP hydrolysis. Retains repressor activity.
1oxvD Crystal structure of glcv, the abc-atpase of the glucose abc transporter from sulfolobus solfataricus (see paper)
41% identity, 79% coverage: 1:284/358 of query aligns to 2:285/353 of 1oxvD
1oxvA Crystal structure of glcv, the abc-atpase of the glucose abc transporter from sulfolobus solfataricus (see paper)
41% identity, 79% coverage: 1:284/358 of query aligns to 2:285/353 of 1oxvA
1oxuA Crystal structure of glcv, the abc-atpase of the glucose abc transporter from sulfolobus solfataricus (see paper)
41% identity, 79% coverage: 1:284/358 of query aligns to 2:285/353 of 1oxuA
Q97UY8 Glucose import ATP-binding protein GlcV; EC 7.5.2.- from Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) (Sulfolobus solfataricus) (see paper)
41% identity, 79% coverage: 1:284/358 of query aligns to 2:285/353 of Q97UY8
- S142 (= S138) mutation to A: Decrease in ATPase activity. Can form dimers.
- G144 (= G140) mutation to A: Loss of ATPase activity. Cannot form dimers. Forms an active heterodimer; when associated with A-166.
- E166 (= E162) mutation to A: Loss of ATPase activity. Can form dimers in the presence of ATP-Mg(2+). Forms an active heterodimer; when associated with A-144.; mutation to Q: Strong decrease in ATPase activity. Can form dimers in the presence of ATP alone, without Mg(2+).
2awnB Crystal structure of the adp-mg-bound e. Coli malk (crystallized with atp-mg) (see paper)
36% identity, 97% coverage: 3:350/358 of query aligns to 3:360/374 of 2awnB
P68187 Maltose/maltodextrin import ATP-binding protein MalK; EC 7.5.2.1 from Escherichia coli (strain K12) (see 5 papers)
36% identity, 97% coverage: 3:350/358 of query aligns to 4:361/371 of P68187
- A85 (= A84) mutation to M: Suppressor of EAA loop mutations in MalFG.
- K106 (≠ R105) mutation to C: Suppressor of EAA loop mutations in MalFG.
- V114 (= V117) mutation to C: Suppressor of EAA loop mutations in MalFG.
- V117 (≠ L120) mutation to M: Suppressor of EAA loop mutations in MalFG.
- E119 (= E122) mutation to K: Resistant to inhibitory effects of alpha-methylglucoside but retains transport capacity.
- A124 (≠ E127) mutation to T: Resistant to inhibitory effects of alpha-methylglucoside but retains transport capacity.
- G137 (= G140) mutation to A: Loss of maltose transport. Has greater ability to decrease mal gene expression than wild-type MalK.
- D158 (= D161) mutation to N: Loss of maltose transport but retains ability to repress mal genes.
- R228 (≠ S231) mutation to C: Resistant to inhibitory effects of alpha-methylglucoside but retains transport capacity.
- F241 (vs. gap) mutation to I: Resistant to inhibitory effects of alpha-methylglucoside but retains transport capacity.
- W267 (= W253) mutation to G: Normal maltose transport but constitutive mal gene expression.
- G278 (≠ S268) mutation to P: Resistant to inhibitory effects of alpha-methylglucoside but retains transport capacity.
- S282 (≠ R272) mutation to L: Resistant to inhibitory effects of alpha-methylglucoside but retains transport capacity.
- G284 (≠ F274) mutation to S: Resistant to inhibitory effects of alpha-methylglucoside but retains transport capacity.
- G302 (= G292) mutation to D: Resistant to inhibitory effects of alpha-methylglucoside but retains transport capacity.
- E308 (≠ R298) mutation to Q: Maltose transport is affected but retains ability to interact with MalT.
- S322 (≠ D307) mutation to F: Resistant to inhibitory effects of alpha-methylglucoside but retains transport capacity.
- G340 (≠ S322) mutation to A: Maltose transport is affected but retains ability to interact with MalT.
- G346 (= G336) mutation to S: Normal maltose transport but constitutive mal gene expression.
- F355 (≠ Y345) mutation to Y: Maltose transport is affected but retains ability to interact with MalT.
3puyA Crystal structure of an outward-facing mbp-maltose transporter complex bound to amp-pnp after crystal soaking of the pretranslocation state (see paper)
36% identity, 97% coverage: 3:350/358 of query aligns to 3:360/371 of 3puyA
- binding phosphoaminophosphonic acid-adenylate ester: W12 (≠ F12), S37 (= S37), G38 (= G38), C39 (≠ S39), G40 (= G40), K41 (= K41), S42 (≠ T42), T43 (= T43), Q81 (= Q81), R128 (= R132), A132 (≠ Q136), S134 (= S138), G136 (= G140), Q137 (= Q141), E158 (= E162), H191 (= H195)
- binding magnesium ion: S42 (≠ T42), Q81 (= Q81)
3puxA Crystal structure of an outward-facing mbp-maltose transporter complex bound to adp-bef3 (see paper)
36% identity, 97% coverage: 3:350/358 of query aligns to 3:360/371 of 3puxA
- binding adenosine-5'-diphosphate: W12 (≠ F12), G38 (= G38), C39 (≠ S39), G40 (= G40), K41 (= K41), S42 (≠ T42), T43 (= T43), R128 (= R132), S134 (= S138), Q137 (= Q141)
- binding beryllium trifluoride ion: S37 (= S37), G38 (= G38), K41 (= K41), Q81 (= Q81), S134 (= S138), G136 (= G140), H191 (= H195)
- binding magnesium ion: S42 (≠ T42), Q81 (= Q81)
3puwA Crystal structure of an outward-facing mbp-maltose transporter complex bound to adp-alf4 (see paper)
36% identity, 97% coverage: 3:350/358 of query aligns to 3:360/371 of 3puwA
- binding adenosine-5'-diphosphate: W12 (≠ F12), V17 (≠ A17), G38 (= G38), C39 (≠ S39), G40 (= G40), K41 (= K41), S42 (≠ T42), T43 (= T43), R128 (= R132), A132 (≠ Q136), S134 (= S138), Q137 (= Q141)
- binding tetrafluoroaluminate ion: S37 (= S37), G38 (= G38), K41 (= K41), Q81 (= Q81), S134 (= S138), G135 (= G139), G136 (= G140), E158 (= E162), H191 (= H195)
- binding magnesium ion: S42 (≠ T42), Q81 (= Q81)
3puvA Crystal structure of an outward-facing mbp-maltose transporter complex bound to adp-vo4 (see paper)
36% identity, 97% coverage: 3:350/358 of query aligns to 3:360/371 of 3puvA
- binding adenosine-5'-diphosphate: W12 (≠ F12), V17 (≠ A17), G38 (= G38), C39 (≠ S39), G40 (= G40), K41 (= K41), S42 (≠ T42), T43 (= T43), R128 (= R132), A132 (≠ Q136), S134 (= S138), Q137 (= Q141)
- binding magnesium ion: S42 (≠ T42), Q81 (= Q81)
1q12A Crystal structure of the atp-bound e. Coli malk (see paper)
36% identity, 97% coverage: 3:350/358 of query aligns to 1:358/367 of 1q12A
- binding adenosine-5'-triphosphate: W10 (≠ F12), S35 (= S37), G36 (= G38), C37 (≠ S39), G38 (= G40), K39 (= K41), S40 (≠ T42), T41 (= T43), R126 (= R132), A130 (≠ Q136), S132 (= S138), G134 (= G140), Q135 (= Q141)
P9WQI3 Trehalose import ATP-binding protein SugC; MtbSugC; Nucleotide-binding domain of SugABC transporter; NBD of SugABC transporter; SugABC transporter ATPase SugC; EC 7.5.2.- from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see paper)
42% identity, 78% coverage: 16:294/358 of query aligns to 18:269/393 of P9WQI3
- H193 (= H195) mutation to A: Decreased hydrolysis of ATP. No change in KM, but 2-fold reduction in Vmax compared to wild-type.
8hplC Lpqy-sugabc in state 1 (see paper)
45% identity, 62% coverage: 17:238/358 of query aligns to 16:233/384 of 8hplC
Sites not aligning to the query:
8hprC Lpqy-sugabc in state 4 (see paper)
45% identity, 62% coverage: 17:238/358 of query aligns to 18:235/363 of 8hprC
- binding adenosine-5'-triphosphate: S38 (= S37), G39 (= G38), G41 (= G40), K42 (= K41), S43 (≠ T42), Q82 (= Q81), Q133 (= Q136), G136 (= G139), G137 (= G140), Q138 (= Q141), H192 (= H195)
- binding magnesium ion: S43 (≠ T42), Q82 (= Q81)
Sites not aligning to the query:
8hprD Lpqy-sugabc in state 4 (see paper)
45% identity, 62% coverage: 17:238/358 of query aligns to 18:235/362 of 8hprD
- binding adenosine-5'-triphosphate: S38 (= S37), C40 (≠ S39), G41 (= G40), K42 (= K41), S43 (≠ T42), T44 (= T43), Q82 (= Q81), R129 (= R132), Q133 (= Q136), S135 (= S138), G136 (= G139), G137 (= G140), Q159 (≠ E162), H192 (= H195)
- binding magnesium ion: S43 (≠ T42), Q82 (= Q81)
Sites not aligning to the query:
Query Sequence
>WP_013419018.1 NCBI__GCF_000166055.1:WP_013419018.1
MKIDVRNLSKRFGNFVALKNVDLDIASGELLALLGPSGSGKTTLLRIIAGLDFADGGEVY
FAGENAANLNVRKRHVGFVFQHYALFRHMTVFENVAFGLRVRPRRERKPEHEIVKRVKRL
LEFVHIEGLAERYPDQLSGGQRQRVALARALAIEPNVLLLDEPFGALDAKVRKSLRRWLR
DLHGELNVTSVLVTHDQEEALEVADRIVVMGNGKIEQVGTPEEIYNEPANSFVFDFIGES
VKLPVRIENGGIWIGSRRLATNDELPASGPARLFVRPHDLTFGEVSEAPLQGAVRSVRRV
GALSFADVRLDYGGDDLLVEASLPPETIVRAGDLVGLTPRRYRIYEDGAAESLTSAAL
Or try a new SitesBLAST search
SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory