SitesBLAST
Comparing WP_013419329.1 NCBI__GCF_000166055.1:WP_013419329.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
8rpgA Crystal structure of an alcohol oxidase from streptomyces hiroshimensis (see paper)
42% identity, 96% coverage: 3:524/541 of query aligns to 3:514/518 of 8rpgA
- binding flavin-adenine dinucleotide: G9 (= G9), G11 (= G11), S12 (= S12), A13 (= A13), E33 (= E33), A34 (= A34), W59 (= W60), P77 (= P78), R78 (= R79), G79 (= G80), G84 (= G85), S85 (= S86), N89 (= N90), F90 (≠ A91), M92 (≠ I93), Q216 (= Q216), V217 (≠ A217), A247 (≠ G251), F453 (≠ Y465), A488 (= A498), H498 (≠ N508), T499 (= T509), H500 (≠ N510), A503 (≠ T513)
5nccA Structure of fatty acid photodecarboxylase in complex with fad and palmitic acid (see paper)
39% identity, 96% coverage: 3:524/541 of query aligns to 24:569/578 of 5nccA
- active site: R347 (= R318), L420 (vs. gap), I421 (vs. gap), S507 (≠ I464), A509 (≠ H466), G552 (= G507), Q553 (≠ N508)
- binding flavin-adenine dinucleotide: G30 (= G9), G32 (= G11), T33 (≠ S12), A34 (= A13), L53 (= L32), E54 (= E33), A55 (= A34), F74 (≠ M53), W80 (= W60), A98 (≠ P78), G100 (= G80), G105 (= G85), S106 (= S86), N110 (= N90), A111 (= A91), T112 (≠ M92), L113 (≠ I93), V238 (≠ A217), A278 (≠ G251), H282 (≠ N255), L286 (= L259), N508 (≠ Y465), Q553 (≠ N508), T554 (= T509), G555 (≠ N510), V558 (≠ T513)
A0A248QE08 Fatty acid photodecarboxylase, chloroplastic; CvFAP; EC 4.1.1.106 from Chlorella variabilis (Green alga) (see paper)
39% identity, 96% coverage: 3:524/541 of query aligns to 84:636/654 of A0A248QE08
- TA 93:94 (≠ SA 12:13) binding FAD
- E114 (= E33) binding FAD
- L162 (≠ V82) binding FAD
- S166 (= S86) binding FAD
- NATL 170:173 (≠ NAMI 90:93) binding FAD
- V298 (≠ A217) binding FAD
- C432 (≠ L336) binding hexadecanoate
- R451 (≠ H356) binding hexadecanoate
- Y466 (= Y362) binding hexadecanoate
- Q486 (= Q382) binding hexadecanoate
- G622 (≠ N510) binding FAD
6yrvAAA structure of fap after illumination at 100k (see paper)
39% identity, 96% coverage: 3:524/541 of query aligns to 8:560/573 of 6yrvAAA
- binding carbon dioxide: R375 (≠ H356), N499 (≠ Y465)
- binding flavin-adenine dinucleotide: G14 (= G9), G16 (= G11), T17 (≠ S12), A18 (= A13), L37 (= L32), E38 (= E33), A39 (= A34), F58 (≠ M53), W64 (= W60), A82 (≠ P78), G89 (= G85), S90 (= S86), N94 (= N90), A95 (= A91), T96 (≠ M92), L97 (≠ I93), M191 (≠ T186), V222 (≠ A217), C264 (≠ S250), A265 (≠ G251), G266 (= G252), H269 (≠ N255), N499 (≠ Y465), A534 (= A498), Q544 (≠ N508), T545 (= T509), G546 (≠ N510)
- binding heptadecane: V377 (≠ A358), G379 (≠ I360), M380 (≠ L361), G386 (vs. gap), T389 (vs. gap), Y390 (= Y362), F393 (≠ H365), T408 (≠ N380), Q410 (= Q382)
8b7sA Crystal structure of the chloramphenicol-inactivating oxidoreductase from novosphingobium sp (see paper)
39% identity, 96% coverage: 3:524/541 of query aligns to 5:450/458 of 8b7sA
- binding flavin-adenine dinucleotide: G11 (= G9), G13 (= G11), S14 (= S12), A15 (= A13), E35 (= E33), A36 (= A34), W47 (= W60), P65 (= P78), G67 (= G80), V180 (≠ A217), A214 (≠ G251), G215 (= G252), A218 (≠ N255), T270 (= T326), Y391 (= Y465), A424 (= A498), I435 (≠ T509), N436 (= N510)
8rpfA Crystal structure of an alcohol-oxidase from sphingobacterium daejeonense (see paper)
33% identity, 97% coverage: 3:526/541 of query aligns to 3:532/534 of 8rpfA
- binding 1-butanol: S62 (≠ H63), R218 (≠ T218), N401 (≠ D396), Y403 (≠ L398), A405 (≠ H400), P406 (= P401), L407 (≠ A402)
- binding flavin-adenine dinucleotide: G9 (= G9), G11 (= G11), T12 (≠ S12), E33 (= E33), A34 (= A34), W59 (= W60), P77 (= P78), G79 (= G80), G84 (= G85), S85 (= S86), N89 (= N90), V92 (≠ I93), V217 (≠ A217), A251 (≠ G251), N255 (= N255), F468 (≠ Y465), A504 (= A498), H514 (≠ N508), T515 (= T509), M516 (≠ N510), V519 (≠ T513)
5oc1A Crystal structure of aryl-alcohol oxidase from pleurotus eryngii in complex with p-anisic acid (see paper)
34% identity, 96% coverage: 3:524/541 of query aligns to 2:561/565 of 5oc1A
- active site: V339 (vs. gap), N413 (= N380), A414 (vs. gap), I499 (= I464), H501 (= H466), A544 (≠ G507), H545 (≠ N508)
- binding 4-methoxybenzoic acid: Y91 (≠ A91), I356 (≠ G335), I390 (= I360), F396 (≠ G366), T412 (≠ Y379), I499 (= I464), H501 (= H466), H545 (≠ N508)
- binding flavin-adenine dinucleotide: G8 (= G9), G10 (= G11), N11 (≠ S12), A12 (= A13), E32 (= E33), A33 (= A34), W60 (= W60), P78 (= P78), G80 (= G80), G85 (= G85), S86 (= S86), H90 (≠ N90), Y91 (≠ A91), V93 (≠ I93), V230 (≠ A217), S270 (= S250), A271 (≠ G251), G272 (= G252), F500 (≠ Y465), H545 (≠ N508), T546 (= T509), Q547 (≠ N510), I550 (≠ T513)
3fimB Crystal structure of aryl-alcohol-oxidase from pleurotus eryingii (see paper)
34% identity, 96% coverage: 3:524/541 of query aligns to 2:561/565 of 3fimB
- active site: V339 (vs. gap), N413 (= N380), A414 (vs. gap), I499 (= I464), H501 (= H466), A544 (≠ G507), H545 (≠ N508)
- binding flavin-adenine dinucleotide: G8 (= G9), N11 (≠ S12), A12 (= A13), E32 (= E33), A33 (= A34), W60 (= W60), P78 (= P78), G80 (= G80), G85 (= G85), S86 (= S86), H90 (≠ N90), Y91 (≠ A91), V93 (≠ I93), V230 (≠ A217), S270 (= S250), A271 (≠ G251), F500 (≠ Y465), H501 (= H466), H545 (≠ N508), T546 (= T509), Q547 (≠ N510), I550 (≠ T513)
4ha6A Crystal structure of pyridoxine 4-oxidase - pyridoxamine complex (see paper)
36% identity, 96% coverage: 4:521/541 of query aligns to 3:501/508 of 4ha6A
- active site: F360 (≠ Y379), G361 (≠ N380), H444 (≠ I464), H446 (= H466), G487 (= G507), P488 (≠ N508)
- binding flavin-adenine dinucleotide: G8 (= G9), G10 (= G11), S11 (= S12), A12 (= A13), E32 (= E33), A33 (= A34), W58 (= W60), R77 (= R79), G78 (= G80), G83 (= G85), S84 (= S86), L87 (≠ V89), H88 (≠ N90), A89 (= A91), M90 (= M92), G91 (≠ I93), V218 (≠ A217), A251 (≠ G251), G252 (= G252), E255 (≠ N255), H445 (≠ Y465), A478 (= A498), P488 (≠ N508), I489 (≠ T509), H490 (≠ N510)
- binding 4-(aminomethyl)-5-(hydroxymethyl)-2-methylpyridin-3-ol: A89 (= A91), S314 (≠ P313), H444 (≠ I464), H446 (= H466)
3t37A Crystal structure of pyridoxine 4-oxidase from mesorbium loti
36% identity, 96% coverage: 4:521/541 of query aligns to 3:501/509 of 3t37A
- active site: F360 (≠ Y379), G361 (≠ N380), H444 (≠ I464), H446 (= H466), G487 (= G507), P488 (≠ N508)
- binding flavin-adenine dinucleotide: G8 (= G9), G10 (= G11), S11 (= S12), A12 (= A13), E32 (= E33), A33 (= A34), W58 (= W60), R77 (= R79), G78 (= G80), R79 (≠ K81), G83 (= G85), S84 (= S86), H88 (≠ N90), A89 (= A91), G91 (≠ I93), R217 (≠ Q216), V218 (≠ A217), A251 (≠ G251), E255 (≠ N255), H445 (≠ Y465), A478 (= A498), P488 (≠ N508), I489 (≠ T509), H490 (≠ N510)
4mjwA Crystal structure of choline oxidase in complex with the reaction product glycine betaine (see paper)
35% identity, 97% coverage: 3:527/541 of query aligns to 14:529/532 of 4mjwA
- active site: I333 (≠ V320), P377 (≠ Y379), N378 (= N380), V464 (≠ I464), H466 (= H466), V509 (≠ G507), N510 (= N508)
- binding flavin-adenine dinucleotide: G20 (= G9), G22 (= G11), S23 (= S12), E44 (= E33), A45 (= A34), W71 (= W60), R89 (= R79), A90 (≠ G80), G95 (= G85), C96 (≠ S86), H99 (≠ V89), N100 (= N90), S101 (≠ A91), I103 (= I93), R231 (≠ Q216), A232 (= A217), T269 (≠ G251), G270 (= G252), D273 (≠ N255), Y465 (= Y465), H466 (= H466), A500 (= A498), N510 (= N508), P511 (≠ T509), N512 (= N510), V515 (≠ T513)
2jbvA Crystal structure of choline oxidase reveals insights into the catalytic mechanism (see paper)
35% identity, 96% coverage: 3:524/541 of query aligns to 14:526/527 of 2jbvA
- active site: I333 (≠ V320), P377 (≠ Y379), N378 (= N380), V464 (≠ I464), H466 (= H466), V509 (≠ G507), N510 (= N508)
- binding [(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl (2R,3S,4S)-5-[(4aS,10aR)-7,8-dimethyl-2,4-dioxo-1,3,4,4a,5,10a-hexahydrobenzo[g]pteridin-10(2H)-yl]-2,3,4-trihydroxypentyl dihydrogen diphosphate: G22 (= G11), S23 (= S12), E44 (= E33), A45 (= A34), W71 (= W60), A90 (≠ G80), G95 (= G85), C96 (≠ S86), H99 (≠ V89), N100 (= N90), S101 (≠ A91), I103 (= I93), R231 (≠ Q216), A232 (= A217), T269 (≠ G251), G270 (= G252), D273 (≠ N255), V464 (≠ I464), Y465 (= Y465), H466 (= H466), D499 (= D497), A500 (= A498), N510 (= N508), P511 (≠ T509), N512 (= N510), V515 (≠ T513)
3ljpA Crystal structure of choline oxidase v464a mutant (see paper)
35% identity, 97% coverage: 3:527/541 of query aligns to 14:529/530 of 3ljpA
- active site: I333 (≠ V320), P377 (≠ Y379), N378 (= N380), A464 (≠ I464), H466 (= H466), V509 (≠ G507), N510 (= N508)
- binding dihydroflavine-adenine dinucleotide: G22 (= G11), S23 (= S12), E44 (= E33), A45 (= A34), W71 (= W60), R89 (= R79), A90 (≠ G80), G95 (= G85), C96 (≠ S86), H99 (≠ V89), N100 (= N90), S101 (≠ A91), I103 (= I93), A232 (= A217), T269 (≠ G251), D273 (≠ N255), Y465 (= Y465), H466 (= H466), D499 (= D497), A500 (= A498), N510 (= N508), P511 (≠ T509), N512 (= N510), V515 (≠ T513)
8bxlB Patulin synthase from penicillium expansum (see paper)
33% identity, 96% coverage: 3:521/541 of query aligns to 14:583/590 of 8bxlB
- binding flavin-adenine dinucleotide: G20 (= G9), G22 (= G11), T23 (≠ S12), A24 (= A13), E44 (= E33), A45 (= A34), W80 (= W60), G100 (= G80), G105 (= G85), S106 (= S86), R109 (≠ V89), N110 (= N90), Y111 (≠ A91), A113 (≠ I93), L253 (≠ Q216), A254 (= A217), A288 (≠ G251), Q292 (≠ N255), F525 (≠ Y465), D559 (= D497), A560 (= A498), H570 (≠ N508), P571 (≠ T509), Q572 (≠ N510), L575 (≠ T513)
4udqA Crystal structure of 5-hydroxymethylfurfural oxidase (hmfo) in the reduced state
33% identity, 97% coverage: 3:526/541 of query aligns to 2:525/525 of 4udqA
- active site: L331 (≠ V334), F364 (≠ Y379), W365 (≠ N380), V461 (≠ I464), H463 (= H466), A506 (≠ G507), N507 (= N508)
- binding flavin-adenine dinucleotide: G8 (= G9), G10 (= G11), T11 (≠ S12), A12 (= A13), E32 (= E33), A33 (= A34), W64 (vs. gap), G88 (= G80), G93 (= G85), G94 (≠ S86), N98 (= N90), M99 (≠ A91), V101 (≠ I93), V229 (≠ A217), T261 (≠ S250), A262 (≠ G251), W462 (≠ Y465), H463 (= H466), A497 (= A498), N507 (= N508), T508 (= T509), N509 (= N510), T512 (= T513)
E4QP00 5-(hydroxymethyl)furfural oxidase; 5-hydroxymethylfurfural oxidase; HMFO; Thiol oxidase; EC 1.1.3.47; EC 1.8.3.- from Methylovorus sp. (strain MP688) (see paper)
33% identity, 97% coverage: 3:526/541 of query aligns to 6:529/531 of E4QP00
- V101 (= V89) mutation to H: Abolishes activity.
- M103 (≠ A91) mutation to A: 16-fold reduction in catalytic efficiency on vanillyl alcohol.
- V367 (≠ M369) mutation to K: 1.6-fold reduction in catalytic efficiency on vanillyl alcohol. Shows significantly improved activity on the aldehyde 5-formyl-2-furancarboxylate, which results in a better 5-hydroxymethylfurfural to 2,5-furandicarboxylate conversion.; mutation to R: 1.4-fold reduction in catalytic efficiency on vanillyl alcohol. Shows significantly improved activity on the aldehyde 5-formyl-2-furancarboxylate, which results in a better 5-hydroxymethylfurfural to 2,5-furandicarboxylate conversion. Displays a catalytic efficiency toward 5-formyl-2-furancarboxylate that is over 1000-fold higher than that for wild-type; when associated with F-466.
- W369 (≠ N380) mutation to A: 7.5-fold reduction in catalytic efficiency on vanillyl alcohol.
- V465 (≠ I464) mutation to A: 18-fold reduction in catalytic efficiency on vanillyl alcohol.
- W466 (≠ Y465) mutation to A: 39-fold reduction in catalytic efficiency on vanillyl alcohol. In contrast to wild-type, is active on secondary alcohols, such as (S)-1-phenylethanol, and is strictly enantionselective as this mutant has no activity on (R)-1-phenylethanol. Shows increased activity on the aldehyde 5-formyl-2-furancarboxylate.; mutation to F: 3.4-fold reduction in catalytic efficiency on vanillyl alcohol. In contrast to wild-type, is active on secondary alcohols, such as (S)-1-phenylethanol, and is strictly enantionselective as this mutant has no activity on (R)-1-phenylethanol. Shows increased activity on the aldehyde 5-formyl-2-furancarboxylate. Displays a catalytic efficiency toward 5-formyl-2-furancarboxylate that is over 1000-fold higher than that for wild-type; when associated with R-367.
- H467 (= H466) mutation to A: Abolishes activity.
- N511 (= N508) mutation to A: 53-fold reduction in catalytic efficiency on vanillyl alcohol.
4h7uA Crystal structure of pyranose dehydrogenase from agaricus meleagris, wildtype (see paper)
31% identity, 96% coverage: 3:524/541 of query aligns to 16:572/577 of 4h7uA
- active site: A343 (≠ S314), V426 (≠ M376), Y510 (≠ I464), H512 (= H466), A555 (≠ G507), H556 (≠ N508)
- binding [(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl (2R,3S,4S)-2,3,4-trihydroxy-5-[(4aR)-4a-hydroxy-7,8-dimethyl-2,4-dioxo-3,4,4a,5-tetrahydrobenzo[g]pteridin-10(2H)-yl]pentyl dihydrogen diphosphate (non-preferred name): G22 (= G9), G24 (= G11), T25 (≠ S12), A26 (= A13), E46 (= E33), A47 (= A34), W74 (= W60), G99 (= G85), C100 (≠ S86), H103 (≠ V89), N104 (= N90), G105 (≠ A91), V107 (≠ I93), L242 (≠ Q216), V243 (≠ A217), G282 (= G251), G283 (= G252), A286 (≠ N255), H512 (= H466), A546 (= A498), H556 (≠ N508), T557 (= T509), Q558 (≠ N510), V561 (≠ T513)
Q3L245 Pyranose dehydrogenase 1; PDH 1; Pyranose:quinone oxidoreductase 1; EC 1.1.99.29 from Leucoagaricus meleagris (Western flat-topped agaric) (Agaricus meleagris) (see 2 papers)
31% identity, 96% coverage: 3:524/541 of query aligns to 41:597/602 of Q3L245
- N100 (≠ G61) modified: carbohydrate, N-linked (GlcNAc...) asparagine
- H128 (≠ V89) modified: Tele-8alpha-FAD histidine
- N344 (= N288) modified: carbohydrate, N-linked (GlcNAc...) asparagine
- H537 (= H466) active site, Proton acceptor
- H581 (≠ N508) active site
Sites not aligning to the query:
4ynuA Crystal structure of aspergillus flavus fadgdh in complex with d- glucono-1,5-lactone (see paper)
33% identity, 96% coverage: 3:524/541 of query aligns to 4:562/569 of 4ynuA
- active site: V341 (≠ Y307), F412 (≠ Y375), W413 (≠ M376), N501 (≠ I464), H503 (= H466), G545 (= G507), H546 (≠ N508)
- binding flavin-adenine dinucleotide: G12 (= G11), T13 (≠ S12), S14 (≠ A13), E34 (= E33), A35 (= A34), Y51 (= Y49), F55 (≠ R54), W61 (= W60), R79 (≠ P78), G81 (= G80), G86 (= G85), T87 (≠ S86), N91 (= N90), G92 (≠ A91), T232 (≠ Q216), A233 (= A217), A273 (≠ G251), G274 (= G252), R277 (≠ N255), F502 (≠ Y465), A536 (= A498), H546 (≠ N508), L547 (≠ T509), V548 (≠ N510), L551 (≠ T513)
- binding D-glucono-1,5-lactone: Y51 (= Y49), E411 (≠ H373), A496 (≠ R459), N497 (≠ T460), R499 (≠ E462), R499 (≠ E462), N501 (≠ I464), H503 (= H466), H546 (≠ N508)
4yntA Crystal structure of aspergillus flavus fad glucose dehydrogenase (see paper)
33% identity, 96% coverage: 3:524/541 of query aligns to 5:563/570 of 4yntA
- active site: V342 (≠ Y307), F413 (≠ Y375), W414 (≠ M376), N502 (≠ I464), H504 (= H466), G546 (= G507), H547 (≠ N508)
- binding dihydroflavine-adenine dinucleotide: G13 (= G11), T14 (≠ S12), S15 (≠ A13), E35 (= E33), A36 (= A34), F56 (≠ R54), W62 (= W60), R80 (≠ P78), G82 (= G80), G87 (= G85), T88 (≠ S86), N92 (= N90), G93 (≠ A91), M94 (= M92), A95 (≠ I93), A234 (= A217), A274 (≠ G251), R278 (≠ N255), F503 (≠ Y465), A537 (= A498), H547 (≠ N508), L548 (≠ T509), V549 (≠ N510), L552 (≠ T513)
Query Sequence
>WP_013419329.1 NCBI__GCF_000166055.1:WP_013419329.1
MGYDYIIAGGGSAGCVLANRLSADPSVKVALLEAGGRDWNFLIHMPSGYAGLMRTGWVDW
GYHTEPQAGLNGRRLYWPRGKVLGGSSSVNAMIYIRGVPSDYDTWAQLGNRGWAWDDVLP
YFKKAENYAGGADEYHGGNGPLKVSRPGVVNPLNVAWIEAGKQAGHPYTDDFNGASQEGF
GPIDCTVSNGRRASAAVCYLKPVIDRPNLTVITRAQATRIVVENGRAVGVEYAQGREKRT
IRAEREVIVSGGAINSPQLLLLSGIGPADEIAPHGIEPVHHLPGVGKNLQDHIHGAIKHY
CPKPVSYYNIVKPSALVRHVAYYLMTHKGPASIVGLESLAFLKTRPEVVAPDVQYHFAAI
LYADHGRKMIQRHGYMGYYNMQRPHARGEIVLKSADPLAHPAIQPNYLQNEADLRTLRDG
FKMLRDVFAQAAFDPYRGEEFQPGDTVRTDAEIDDYNRRTAETIYHPIGTCKMGQDDMAV
VDETLRVRGLEGLRVVDASIMPRLISGNTNAPTIMIAERAADIILSGVVASSDSGDAAMA
A
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SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory