SitesBLAST
Comparing WP_013420781.1 NCBI__GCF_000166055.1:WP_013420781.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 20 (the maximum) hits to proteins with known functional sites (download)
8i9iA Glutamyl-tRNA synthetase from escherichia coli bound to glutamate and zinc
39% identity, 98% coverage: 7:520/525 of query aligns to 3:457/468 of 8i9iA
P04805 Glutamate--tRNA ligase; Glutamyl-tRNA synthetase; GluRS; EC 6.1.1.17 from Escherichia coli (strain K12) (see 4 papers)
39% identity, 98% coverage: 7:520/525 of query aligns to 3:457/471 of P04805
- C98 (= C102) mutation to S: 10-fold decrease in activity. Strong decrease in zinc content.
- C100 (≠ S104) mutation to S: Loss of activity. Strong decrease in zinc content.; mutation to Y: Does not prevent zinc binding. Reduces only 2-fold the binding affinity for tRNA(Glu), but reduces more than 10-fold the affinity for glutamate in the presence of tRNA(Glu).
- C125 (≠ Y154) mutation to S: Loss of activity. Strong decrease in zinc content.
- H127 (≠ D156) mutation to Q: 10-fold decrease in activity. Strong decrease in zinc content.
- H129 (≠ K158) mutation to Q: No change in activity or in zinc content.
- H131 (≠ P160) mutation to Q: No change in activity or in zinc content.
- H132 (≠ P161) mutation to Q: No change in activity or in zinc content.
- C138 (≠ F167) mutation to S: No change in activity or in zinc content.
- S239 (= S268) modified: Phosphoserine; mutation to D: Does not aminoacylate tRNA(Glu), not phosphorylated by HipA.
4g6zA Crystal structure of a glutamyl-tRNA synthetase glurs from burkholderia thailandensis bound to l-glutamate (see paper)
42% identity, 75% coverage: 7:398/525 of query aligns to 3:349/380 of 4g6zA
2cv2A Glutamyl-tRNA synthetase from thermus thermophilus in complex with tRNA(glu) and an enzyme inhibitor, glu-ams (see paper)
39% identity, 98% coverage: 7:520/525 of query aligns to 2:463/468 of 2cv2A
- active site: K246 (= K269)
- binding o5'-(l-glutamyl-sulfamoyl)-adenosine: R5 (= R10), A7 (= A12), S9 (= S14), G17 (= G22), I21 (≠ T26), E41 (= E46), Y187 (= Y210), R205 (= R228), A206 (≠ G229), E208 (≠ D231), W209 (≠ H232), L235 (= L258), L236 (≠ I259)
- binding : S9 (= S14), T43 (= T48), D44 (= D49), R47 (= R52), V145 (= V168), R163 (≠ Q186), Y168 (≠ W191), E172 (≠ D195), V177 (= V200), K180 (≠ R203), S181 (= S204), Y187 (= Y210), E207 (≠ D230), E208 (≠ D231), W209 (≠ H232), V211 (≠ T234), R237 (≠ H260), K241 (≠ G264), L272 (≠ R295), M273 (≠ L296), G274 (= G297), E282 (= E304), S299 (≠ G321), P303 (≠ S325), V304 (≠ R326), K309 (= K331), W312 (≠ N334), R319 (= R341), P357 (≠ E386), R358 (= R387), R417 (= R474), Q432 (= Q489), R435 (= R492), L442 (≠ T499), E443 (≠ V500), T444 (≠ S501), G446 (≠ P503), L447 (≠ V504), F448 (= F505)
2cv1A Glutamyl-tRNA synthetase from thermus thermophilus in complex with tRNA(glu), atp, and an analog of l-glutamate: a quaternary complex
39% identity, 98% coverage: 7:520/525 of query aligns to 2:463/468 of 2cv1A
- active site: K246 (= K269)
- binding adenosine-5'-triphosphate: P8 (= P13), S9 (= S14), G17 (= G22), T18 (≠ G23), I21 (≠ T26), R47 (= R52), A206 (≠ G229), W209 (≠ H232), L235 (= L258), L236 (≠ I259)
- binding (4s)-4-amino-5-hydroxypentanoic acid: R5 (= R10), A7 (= A12), E41 (= E46), Y187 (= Y210), R205 (= R228), W209 (≠ H232)
- binding : S9 (= S14), E41 (= E46), T43 (= T48), D44 (= D49), R47 (= R52), V145 (= V168), R163 (≠ Q186), V166 (= V189), E172 (≠ D195), V177 (= V200), K180 (≠ R203), S181 (= S204), Y187 (= Y210), E207 (≠ D230), E208 (≠ D231), W209 (≠ H232), V211 (≠ T234), R237 (≠ H260), K241 (≠ G264), K243 (= K266), M273 (≠ L296), G274 (= G297), S276 (≠ G299), E282 (= E304), S299 (≠ G321), P303 (≠ S325), V304 (≠ R326), K309 (= K331), W312 (≠ N334), R319 (= R341), P357 (≠ E386), R358 (= R387), R417 (= R474), L427 (= L484), Q432 (= Q489), R435 (= R492), L442 (≠ T499), E443 (≠ V500), T444 (≠ S501), G446 (≠ P503), L447 (≠ V504), F448 (= F505)
2cuzA Glutamyl-tRNA synthetase from thermus thermophilus in complex with l- glutamate (see paper)
39% identity, 98% coverage: 7:520/525 of query aligns to 2:463/468 of 2cuzA
1n78A Crystal structure of thermus thermophilus glutamyl-tRNA synthetase complexed with tRNA(glu) and glutamol-amp. (see paper)
39% identity, 98% coverage: 7:520/525 of query aligns to 2:463/468 of 1n78A
- active site: K246 (= K269)
- binding glutamol-amp: R5 (= R10), A7 (= A12), P8 (= P13), S9 (= S14), G17 (= G22), T18 (≠ G23), I21 (≠ T26), E41 (= E46), Y187 (= Y210), N191 (≠ V214), R205 (= R228), A206 (≠ G229), E208 (≠ D231), W209 (≠ H232), L235 (= L258), L236 (≠ I259)
- binding : S9 (= S14), T43 (= T48), D44 (= D49), R47 (= R52), V145 (= V168), R163 (≠ Q186), V166 (= V189), Y168 (≠ W191), E172 (≠ D195), V177 (= V200), K180 (≠ R203), S181 (= S204), Y187 (= Y210), E207 (≠ D230), E208 (≠ D231), W209 (≠ H232), L210 (= L233), V211 (≠ T234), R237 (≠ H260), K241 (≠ G264), M273 (≠ L296), G274 (= G297), E282 (= E304), R297 (≠ A319), P303 (≠ S325), V304 (≠ R326), K309 (= K331), W312 (≠ N334), R319 (= R341), P357 (≠ E386), R358 (= R387), R417 (= R474), L427 (= L484), Q432 (= Q489), R435 (= R492), L442 (≠ T499), E443 (≠ V500), T444 (≠ S501), G446 (≠ P503), L447 (≠ V504), F448 (= F505)
1j09A Crystal structure of thermus thermophilus glutamyl-tRNA synthetase complexed with atp and glu (see paper)
39% identity, 98% coverage: 7:520/525 of query aligns to 2:463/468 of 1j09A
- active site: K246 (= K269)
- binding adenosine-5'-triphosphate: H15 (= H20), E208 (≠ D231), L235 (= L258), L236 (≠ I259), K243 (= K266), I244 (≠ L267), S245 (= S268), K246 (= K269), R247 (= R270)
- binding glutamic acid: R5 (= R10), A7 (= A12), S9 (= S14), E41 (= E46), Y187 (= Y210), N191 (≠ V214), R205 (= R228), W209 (≠ H232)
P27000 Glutamate--tRNA ligase; Glutamyl-tRNA synthetase; GluRS; EC 6.1.1.17 from Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8) (see paper)
39% identity, 98% coverage: 7:520/525 of query aligns to 2:463/468 of P27000
- R358 (= R387) mutation to Q: Reduces affinity for tRNA and abolishes the ability to discriminate between tRNA(Glu) and tRNA(Gln).
1g59A Glutamyl-tRNA synthetase complexed with tRNA(glu). (see paper)
39% identity, 98% coverage: 7:520/525 of query aligns to 2:463/468 of 1g59A
- binding : D44 (= D49), R45 (= R50), A46 (= A51), R47 (= R52), P109 (= P106), V145 (= V168), R163 (≠ Q186), V166 (= V189), E172 (≠ D195), V177 (= V200), K180 (≠ R203), S181 (= S204), D182 (= D205), E207 (≠ D230), E208 (≠ D231), R237 (≠ H260), K241 (≠ G264), T242 (≠ A265), K243 (= K266), M273 (≠ L296), G274 (= G297), E282 (= E304), S299 (≠ G321), L300 (≠ R322), P303 (≠ S325), V304 (≠ R326), K309 (= K331), W312 (≠ N334), R319 (= R341), P357 (≠ E386), R358 (= R387), R417 (= R474), K426 (= K483), L427 (= L484), Q432 (= Q489), R435 (= R492), L442 (≠ T499), E443 (≠ V500), T444 (≠ S501), P445 (= P502), G446 (≠ P503), L447 (≠ V504), F448 (= F505)
4griB Crystal structure of a glutamyl-tRNA synthetase glurs from borrelia burgdorferi bound to glutamic acid and zinc (see paper)
33% identity, 98% coverage: 9:520/525 of query aligns to 4:475/485 of 4griB
- active site: S9 (= S14), K253 (= K269)
- binding glutamic acid: R5 (= R10), A7 (= A12), S9 (= S14), E41 (= E46), Y194 (= Y210), R212 (= R228), W216 (≠ H232)
- binding zinc ion: C105 (= C102), C107 (≠ S104), Y128 (vs. gap), C132 (≠ K128)
2cfoA Non-discriminating glutamyl-tRNA synthetase from thermosynechococcus elongatus in complex with glu (see paper)
38% identity, 97% coverage: 7:515/525 of query aligns to 2:470/484 of 2cfoA
Q8DLI5 Glutamate--tRNA ligase; Glutamyl-tRNA synthetase; GluRS; EC 6.1.1.17 from Thermosynechococcus vestitus (strain NIES-2133 / IAM M-273 / BP-1) (see paper)
38% identity, 97% coverage: 7:515/525 of query aligns to 3:471/485 of Q8DLI5
- R6 (= R10) binding L-glutamate
- Y192 (= Y210) binding L-glutamate
3al0C Crystal structure of the glutamine transamidosome from thermotoga maritima in the glutamylation state. (see paper)
34% identity, 98% coverage: 7:520/525 of query aligns to 103:555/564 of 3al0C
- active site: S110 (= S14), K335 (= K269)
- binding o5'-(l-glutamyl-sulfamoyl)-adenosine: R106 (= R10), A108 (= A12), P109 (= P13), G118 (= G22), T122 (= T26), E142 (= E46), Y276 (= Y210), R294 (= R228), G295 (= G229), D297 (= D231), H298 (= H232), L324 (= L258), I325 (= I259), L333 (= L267)
- binding : T144 (= T48), D145 (= D49), R148 (= R52), Y208 (vs. gap), P213 (≠ A131), K252 (≠ Q186), M255 (≠ V189), I266 (≠ V200), K269 (≠ R203), S270 (= S204), Y276 (= Y210), D297 (= D231), H298 (= H232), L299 (= L233), S300 (≠ T234), N301 (= N235), K304 (≠ R238), R330 (≠ G264), P332 (≠ K266), G363 (= G297), W364 (= W298), R365 (≠ G299), E370 (= E304), S387 (≠ G321), K389 (≠ S323), V391 (≠ S325), I392 (≠ R326), K397 (= K331), W400 (≠ N334), R407 (= R341), E446 (= E393), K447 (≠ L394), Q453 (≠ Y400), I457 (≠ T404), R509 (= R474), K520 (≠ G485), Q524 (= Q489), R527 (= R492), V535 (= V500), T536 (≠ S501), G538 (≠ P503), L539 (≠ V504)
8vc5A Crystal structure of glutamyl-tRNA synthetase glurs from pseudomonas aeruginosa (zinc bound)
33% identity, 98% coverage: 5:520/525 of query aligns to 2:462/488 of 8vc5A
6brlA Crystal structure of a glutamate tRNA ligase from elizabethkingia meningosepticum ccug26117 in complex with its amino acid (see paper)
32% identity, 98% coverage: 7:520/525 of query aligns to 3:494/502 of 6brlA
4a91A Crystal structure of the glutamyl-queuosine trnaasp synthetase from e. Coli complexed with l-glutamate (see paper)
33% identity, 51% coverage: 8:274/525 of query aligns to 5:234/290 of 4a91A
- active site: S11 (= S14), K229 (= K269)
- binding glutamic acid: R7 (= R10), A9 (= A12), S11 (= S14), E43 (= E46), Y170 (= Y210), R188 (= R228), L192 (≠ H232)
- binding zinc ion: C99 (= C102), C101 (≠ S104), Y113 (≠ A116), C117 (≠ R120)
P27305 Glutamyl-Q tRNA(Asp) synthetase; Glu-Q-RSs; EC 6.1.1.- from Escherichia coli (strain K12) (see paper)
32% identity, 51% coverage: 8:273/525 of query aligns to 17:245/308 of P27305
- E55 (= E46) binding L-glutamate
- Y182 (= Y210) binding L-glutamate
- R200 (= R228) binding L-glutamate
3aiiA Archaeal non-discriminating glutamyl-tRNA synthetase from methanothermobacter thermautotrophicus (see paper)
30% identity, 57% coverage: 1:297/525 of query aligns to 4:278/455 of 3aiiA
8uk6A Candida albicans glutaminyl tRNA synthetase (gln4) in complex with n- pyrimidinyl-beta-thiophenylacrylamide (see paper)
34% identity, 21% coverage: 4:114/525 of query aligns to 36:145/573 of 8uk6A
Sites not aligning to the query:
Query Sequence
>WP_013420781.1 NCBI__GCF_000166055.1:WP_013420781.1
MASASGVVTRFAPSPTGFLHIGGARTALFNWLYAKHTGGRFLLRIEDTDRARSTDAAIAA
ILDGLQWLGLDWEGEPVFQFARAERHKEVAYRLLESGNAYRCYSTPEELEAYRAEADAAR
KALSDAKKASASAEEIARLEAALAAKPRVFSSPYRDGKTPPAADAPFVIRLKAPREGETV
VEDEVQGRVRWANKDLDDMVLLRSDGTPTYMLAVVVDDHDMGITHVIRGDDHLTNAARQK
QIYNAMGWDVPTFAHIPLIHGPDGAKLSKRHGALGVDAYRAMGYLPDAMRNYLARLGWGH
GDEEIFTTAQAADWFDLDAIGRSPSRFDFAKLENLNGVYIRNTPDAELVRYIRQVLPTLE
DADYFQARANEGTWRQLEAAMPGLKERAKTIKELVQSAEYLVATLPPIEARGDLNASNST
ISGVTIVADRVPIQPDEKAAKVLSPEARKHLAALKERFAALETWDAASIEAATRTYAEET
GAKLGNIAQPLRAAATGRTVSPPVFDVLAVLGRDEALARIADQAA
Or try a new SitesBLAST search
SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory