SitesBLAST
Comparing WP_013430927.1 NCBI__GCF_000166775.1:WP_013430927.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
5f7qE Rok repressor lmo0178 from listeria monocytogenes bound to operator (see paper)
31% identity, 99% coverage: 2:398/399 of query aligns to 6:395/396 of 5f7qE
- binding zinc ion: H243 (= H240), C253 (= C250), C255 (= C252), C260 (= C257)
- binding : K8 (≠ H4), K12 (= K8), N15 (= N11), T32 (≠ A28), S43 (≠ A39), T44 (= T40), T67 (≠ K63), G68 (= G64), G68 (= G64), G69 (= G65), G69 (= G65), R70 (= R66), R70 (= R66), R71 (= R67), A72 (≠ P68), K73 (≠ V69)
Sites not aligning to the query:
1z05A Crystal structure of the rok family transcriptional regulator, homolog of e.Coli mlc protein.
31% identity, 95% coverage: 7:384/399 of query aligns to 3:377/396 of 1z05A
5f7rA Rok repressor lmo0178 from listeria monocytogenes bound to inducer (see paper)
32% identity, 64% coverage: 140:393/399 of query aligns to 61:306/306 of 5f7rA
- binding alpha-D-glucopyranose: G70 (= G149), N110 (≠ E188), N110 (≠ E188), S134 (= S212), V135 (= V213), G138 (= G216), L139 (= L217), G140 (= G218), E159 (= E237), H162 (= H240), E181 (= E259), E253 (≠ K340), W293 (≠ V380)
- binding zinc ion: H162 (= H240), C172 (= C250), C174 (= C252), C179 (= C257)
Sites not aligning to the query:
2qm1B Crystal structure of glucokinase from enterococcus faecalis
31% identity, 78% coverage: 80:389/399 of query aligns to 8:320/325 of 2qm1B
P50456 DNA-binding transcriptional repressor Mlc; Making large colonies protein; Membrane linked control from Escherichia coli (strain K12) (see 4 papers)
26% identity, 95% coverage: 7:384/399 of query aligns to 13:387/406 of P50456
- R52 (≠ D46) mutation to H: Shows increased expression and forms larger colonies.
- H86 (≠ S79) mutation to R: Can be bound and inactivated by MtfA.
- F136 (≠ I130) mutation to A: Decreases association with PtsG EIIB domain.
- H247 (= H240) binding Zn(2+)
- C257 (= C250) binding Zn(2+); mutation to A: Strongly reduced activity; when associated with A-259.; mutation to S: Strongly reduced activity; when associated with S-259.
- C259 (= C252) binding Zn(2+); mutation to A: Strongly reduced activity; when associated with A-257.; mutation to S: Strongly reduced activity; when associated with S-257.
- C264 (= C257) binding Zn(2+)
- R306 (≠ E303) mutation to G: Forms dimers but not tetramers; when associated with G-310.
- L310 (≠ V307) mutation to G: Forms dimers but not tetramers; when associated with G-306.
1z6rA Crystal structure of mlc from escherichia coli (see paper)
25% identity, 95% coverage: 7:384/399 of query aligns to 2:363/382 of 1z6rA
3vglA Crystal structure of a rok family glucokinase from streptomyces griseus in complex with glucose and amppnp (see paper)
36% identity, 61% coverage: 143:384/399 of query aligns to 59:305/312 of 3vglA
- binding phosphoaminophosphonic acid-adenylate ester: G130 (= G214), T131 (≠ I215), G180 (≠ E264), G214 (≠ P294), S218 (≠ I298), G260 (≠ K340), V261 (≠ A341), E264 (≠ F344)
- binding beta-D-glucopyranose: G65 (= G149), P78 (= P162), N103 (= N187), D104 (≠ E188), L133 (= L217), G134 (= G218), E153 (= E237), H156 (= H240), E175 (= E259)
- binding zinc ion: H156 (= H240), C166 (= C250), C168 (= C252), C173 (= C257)
Sites not aligning to the query:
3vgkB Crystal structure of a rok family glucokinase from streptomyces griseus (see paper)
36% identity, 61% coverage: 143:384/399 of query aligns to 59:305/312 of 3vgkB
2yi1A Crystal structure of n-acetylmannosamine kinase in complex with n- acetyl mannosamine 6-phosphate and adp. (see paper)
29% identity, 71% coverage: 79:361/399 of query aligns to 4:279/308 of 2yi1A
- binding adenosine-5'-diphosphate: G11 (= G86), T13 (≠ D88), N14 (≠ Y89), R16 (≠ H91), T140 (≠ I215), G189 (≠ E264), L216 (≠ S295), V261 (≠ F343)
- binding 2-acetamido-2-deoxy-6-O-phosphono-alpha-D-mannopyranose: G12 (≠ V87), G71 (≠ P148), G72 (= G149), R73 (≠ I150), S84 (≠ A161), T85 (≠ P162), L87 (= L164), N112 (= N187), D113 (≠ E188), G139 (= G214), T140 (≠ I215), G141 (= G216), I142 (≠ L217), E162 (= E237), H165 (= H240), E184 (= E259)
- binding calcium ion: N112 (= N187), N115 (= N190), G144 (≠ A219), A161 (≠ G236)
- binding zinc ion: H165 (= H240), C175 (= C250), C177 (= C252), C182 (= C257)
2yhyA Structure of n-acetylmannosamine kinase in complex with n- acetylmannosamine and adp (see paper)
29% identity, 71% coverage: 79:361/399 of query aligns to 4:279/308 of 2yhyA
- binding adenosine-5'-diphosphate: G11 (= G86), G12 (≠ V87), T13 (≠ D88), N14 (≠ Y89), R16 (≠ H91), T140 (≠ I215), G189 (≠ E264), L216 (≠ S295), V261 (≠ F343)
- binding calcium ion: N112 (= N187), N115 (= N190), G144 (≠ A219), A161 (≠ G236)
- binding zinc ion: H165 (= H240), C175 (= C250), C177 (= C252), C182 (= C257)
2yhwA High-resolution crystal structures of n-acetylmannosamine kinase: insights about substrate specificity, activity and inhibitor modelling. (see paper)
29% identity, 71% coverage: 79:361/399 of query aligns to 4:280/309 of 2yhwA
Q9Y223 Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase; UDP-GlcNAc-2-epimerase/ManAc kinase; EC 3.2.1.183; EC 2.7.1.60 from Homo sapiens (Human) (see 26 papers)
29% identity, 74% coverage: 68:361/399 of query aligns to 391:688/722 of Q9Y223
- D413 (= D84) binding Mg(2+); to Y: in THC12; likely pathogenic; dbSNP:rs1280775456
- G416 (≠ V87) binding an N-acyl-D-mannosamine 6-phosphate
- T417 (≠ D88) binding ADP; to M: in THC12; likely pathogenic; dbSNP:rs1554659711
- N418 (≠ Y89) binding ADP
- R420 (≠ H91) binding ADP; to Q: in THC12; likely pathogenic; dbSNP:rs780092539
- I472 (= I145) to T: in NM; decreased UDP-N-acetylglucosamine 2-epimerase activity; decreased N-acylmannosamine kinase activity corresponding to less than 10% of wild-type activity
- G475 (≠ P148) to F: in THC12; likely pathogenic; requires 2 nucleotide substitutions
- G476 (= G149) binding an N-acyl-D-mannosamine; binding an N-acyl-D-mannosamine 6-phosphate
- R477 (≠ I150) binding an N-acyl-D-mannosamine; binding an N-acyl-D-mannosamine 6-phosphate
- V485 (= V158) to R: in THC12; uncertain significance; reduced protein abundance in homozygous patient cells; requires 2 nucleotide substitutions
- L486 (= L159) to P: in THC12; uncertain significance; dbSNP:rs774867424
- T489 (≠ P162) binding an N-acyl-D-mannosamine; binding an N-acyl-D-mannosamine 6-phosphate
- N516 (= N187) binding an N-acyl-D-mannosamine; binding an N-acyl-D-mannosamine 6-phosphate
- D517 (≠ E188) active site; binding an N-acyl-D-mannosamine; binding an N-acyl-D-mannosamine 6-phosphate; mutation D->A,N: Loss of N-acylmannosamine kinase activity. Decreased affinity for N-acyl-D-mannosamine. No effect on structure.
- N519 (= N190) to S: in NM and THC12; likely pathogenic; decreased UDP-N-acetylglucosamine 2-epimerase activity; decreased N-acylmannosamine kinase activity; dbSNP:rs1554658910
- A524 (≠ G195) to V: in NM; decreased UDP-N-acetylglucosamine 2-epimerase activity corresponding to less than 10% of wild-type activity; decreased N-acylmannosamine kinase activity; impaired homohexamers formation; dbSNP:rs764698870
- F528 (= F199) to C: in NM; decreased N-acylmannosamine kinase activity; dbSNP:rs986773986
- T544 (≠ I215) to R: in THC12; uncertain significance; reduced protein abundance in homozygous patient cells
- G545 (= G216) binding an N-acyl-D-mannosamine 6-phosphate
- C563 (≠ F234) to Y: in THC12; likely pathogenic; results in severely decreased cell surface sialylation
- E566 (= E237) binding an N-acyl-D-mannosamine
- H569 (= H240) binding an N-acyl-D-mannosamine; binding an N-acyl-D-mannosamine 6-phosphate; binding Zn(2+)
- V572 (≠ I243) to L: in NM and THC12; likely pathogenic; mildly decreased UDP-N-acetylglucosamine 2-epimerase activity; decreased N-acylmannosamine kinase activity corresponding to less than 10% of wild-type activity; does not affect homohexamers formation; dbSNP:rs121908632
- G576 (≠ D247) to E: in NM; decreased UDP-N-acetylglucosamine 2-epimerase activity; decreased N-acylmannosamine kinase activity; dbSNP:rs121908625
- C579 (= C250) binding Zn(2+)
- C581 (= C252) binding Zn(2+)
- C586 (= C257) binding Zn(2+)
- I587 (≠ L258) to T: in NM; decreased UDP-N-acetylglucosamine 2-epimerase activity; decreased N-acylmannosamine kinase activity; dbSNP:rs748949603
- E588 (= E259) binding an N-acyl-D-mannosamine; binding an N-acyl-D-mannosamine 6-phosphate
- A630 (= A300) to T: in NM; decreased N-acylmannosamine kinase activity; does not affect homohexamers formation; dbSNP:rs1382191649
- A631 (= A301) to V: in NM; does not affect homohexamers formation; dbSNP:rs62541771
Sites not aligning to the query:
- 13 C → S: in NM; decreased UDP-N-acetylglucosamine 2-epimerase activity; no effect on N-acylmannosamine kinase activity; dbSNP:rs1209266607
- 19 binding UDP
- 23 binding UDP
- 113 binding UDP
- 132 H → Q: in NM; decreased UDP-N-acetylglucosamine 2-epimerase activity; impaired homohexamers formation
- 157 H → Y: in THC12; likely pathogenic
- 176 D → V: in NM; decreased UDP-N-acetylglucosamine 2-epimerase activity; no effect on N-acylmannosamine kinase activity; impaired homohexamers formation; dbSNP:rs139425890
- 177 R → C: in NM; decreased UDP-N-acetylglucosamine 2-epimerase activity; impaired homohexamers formation; dbSNP:rs539332585
- 200 I → F: in NM; uncertain significance; dbSNP:rs369328625
- 206 G → S: in NM; moderate phenotype with unusual involvement of quadriceps; dbSNP:rs766266918
- 220 binding UDP
- 253 binding UDP
- 259 binding CMP-N-acetyl-beta-neuraminate
- 263 R → L: in SIALURIA; strong reduction of feedback inhibition by CMP-Neu5Ac; dbSNP:rs121908623
- 266 R → Q: in SIALURIA; abolishes feedback inhibition by CMP-Neu5Ac; dbSNP:rs121908622; R → W: in sialuria; dbSNP:rs121908621
- 271 binding CMP-N-acetyl-beta-neuraminate
- 280 binding CMP-N-acetyl-beta-neuraminate
- 281 binding CMP-N-acetyl-beta-neuraminate
- 282 binding UDP
- 301 binding UDP
- 302 binding UDP
- 303 C → V: in NM; requires 2 nucleotide substitutions; dbSNP:rs121908633
- 307 binding UDP
- 321 binding UDP
- 331 V → A: in NM; decreased UDP-N-acetylglucosamine 2-epimerase activity; no effect on N-acylmannosamine kinase activity; impaired homohexamers formation
- 378 D → Y: in NM; decreased UDP-N-acetylglucosamine 2-epimerase activity; impaired homohexamers formation; dbSNP:rs199877522
- 420:722 natural variant: Missing (in THC12; likely pathogenic)
- 704 P → R: in THC12; likely pathogenic; the orthologous mutation in mouse embryos results in cerebrospinal hemorrhages and defective angiogenesis; results in loss of cell surface sialylation
- 708 G → S: in NM and THC12; likely pathogenic; decreased UDP-N-acetylglucosamine 2-epimerase activity; severely decreased N-acylmannosamine kinase activity; dbSNP:rs1554657922
- 712 M → T: in NM; decreased N-acylmannosamine kinase activity; dbSNP:rs28937594
O35826 Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase; UDP-GlcNAc-2-epimerase/ManAc kinase; EC 3.2.1.183; EC 2.7.1.60 from Rattus norvegicus (Rat) (see paper)
28% identity, 74% coverage: 68:361/399 of query aligns to 391:688/722 of O35826
- D413 (= D84) mutation D->K,N: No effect on UDP-N-acetylglucosamine 2-epimerase activity. Does not affect feedback inhibition by CMP-Neu5Ac. Loss of N-acylmannosamine kinase activity. Does not interfere with oligomerization.
- R420 (≠ H91) mutation to M: No effect on UDP-N-acetylglucosamine 2-epimerase activity. Does not affect feedback inhibition by CMP-Neu5Ac. Loss of N-acylmannosamine kinase activity. Does not interfere with oligomerization.
Sites not aligning to the query:
- 1 UDP-N-acetylglucosamine 2-epimerase
- 49 H→A: Loss UDP-N-acetylglucosamine 2-epimerase activity. No effect on N-acylmannosamine kinase activity. Does not interfere with enzyme oligomerization.
- 110 H→A: Loss UDP-N-acetylglucosamine 2-epimerase activity. No effect on N-acylmannosamine kinase activity. Partial reduction of the dimerization process.
- 132 H→A: Loss UDP-N-acetylglucosamine 2-epimerase activity. No effect on N-acylmannosamine kinase activity. Partial reduction of the dimerization process.
- 155 H→A: Loss UDP-N-acetylglucosamine 2-epimerase activity. No effect on N-acylmannosamine kinase activity. Strong reduction of the dimerization process.
- 157 H→A: Loss UDP-N-acetylglucosamine 2-epimerase activity. No effect on N-acylmannosamine kinase activity. Strong reduction of the dimerization process.
- 406:722 N-acetylmannosamine kinase
Q91WG8 Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase; UDP-GlcNAc-2-epimerase/ManAc kinase; EC 3.2.1.183; EC 2.7.1.60 from Mus musculus (Mouse) (see paper)
28% identity, 74% coverage: 68:361/399 of query aligns to 391:688/722 of Q91WG8
- C563 (≠ F234) mutation to Y: Loss-of-function mutant resulting in impaired sialic acid biosynthesis.
Sites not aligning to the query:
- 704 P→R: Homozygous embryos exhibit cerebrospinal hemorrhages and defective angiogenesis in the diencephalon at 11 dpc, and become non-viable between 11.5 and 12.5 dpc. Loss-of-function mutant resulting in impaired sialic acid biosynthesis.
7p9lAAA Ubiquitin-like protein SMT3,N-acetyl-D-glucosamine kinase
29% identity, 53% coverage: 143:352/399 of query aligns to 61:267/303 of 7p9lAAA
- binding 2-acetamido-2-deoxy-6-O-phosphono-beta-D-glucopyranose: P66 (= P148), G67 (= G149), S79 (≠ A161), N105 (= N187), D106 (≠ E188), G132 (= G214), T133 (≠ I215), G134 (= G216), V135 (≠ L217), G136 (= G218), E155 (= E237), H158 (= H240), D188 (≠ E259)
- binding zinc ion: H158 (= H240), C179 (= C250), C181 (= C252), C186 (= C257), E212 (≠ R296), H216 (≠ A300)
7p9pAAA Ubiquitin-like protein SMT3,N-acetyl-D-glucosamine kinase
29% identity, 53% coverage: 143:352/399 of query aligns to 62:268/304 of 7p9pAAA
- binding phosphoaminophosphonic acid-adenylate ester: G133 (= G214), T134 (≠ I215), G194 (≠ E264), E198 (≠ Q277), A211 (≠ P294), G256 (≠ N339), G257 (≠ K340), N260 (≠ F343)
- binding zinc ion: H159 (= H240), C180 (= C250), C182 (= C252), C187 (= C257), E213 (≠ R296), H217 (≠ A300)
Sites not aligning to the query:
7p7wBBB Ubiquitin-like protein SMT3,N-acetyl-D-glucosamine kinase
29% identity, 53% coverage: 143:352/399 of query aligns to 64:270/306 of 7p7wBBB
3eo3A Crystal structure of the n-acetylmannosamine kinase domain of human gne protein (see paper)
26% identity, 71% coverage: 79:361/399 of query aligns to 3:259/288 of 3eo3A
Q93LQ8 Beta-glucoside kinase; EC 2.7.1.85 from Klebsiella pneumoniae (see paper)
27% identity, 49% coverage: 142:338/399 of query aligns to 56:241/297 of Q93LQ8
- D103 (≠ E188) mutation to G: Loss of catalytic activity.
- G131 (= G216) mutation to A: Loss of catalytic activity.
- G133 (= G218) mutation to A: Loss of catalytic activity.
Sites not aligning to the query:
- 7 D→G: Loss of catalytic activity.
- 9 G→A: Loss of catalytic activity.
3vovB Crystal structure of rok hexokinase from thermus thermophilus (see paper)
31% identity, 54% coverage: 143:357/399 of query aligns to 61:266/298 of 3vovB
Query Sequence
>WP_013430927.1 NCBI__GCF_000166775.1:WP_013430927.1
MGNHTLLKQINKLLVLKTILDNKIISRAKISRLVDLNKATVSNLTDELIKEGYIVEKGYG
KSKGGRRPVLLQVNKDVGSIIGIDLGVDYIHVILSNFVGEVIFEEYAEMKMGEDKDKLFD
LLFDLIEKAIDRAPHTPKGILGIGIGVPGIVEKESGIVLIAPNLKWKNVHLKSIVQQRFN
LPVYIDNEANAGALGEKWFGEWGKVSDLIYLSVGIGLGAGIIIDNKLFRGAAGFAGEVGH
TTINFQDDVCSCGNIGCLENFASERALLSVIKKLVKQGVEDRYISCENVHEITPSRIIQA
AKEGSRVCRMAILEVAEKMGIGVANLVNIFNPEMVIIGNKASFFGELFLEKLREVINQRS
FIAQFYNLKIEVSKLKDRAVVLGCIAMVISDMLSFPEYA
Or try a new SitesBLAST search
SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory