SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_013444347.1 NCBI__GCF_000183135.1:WP_013444347.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

P0AFF4 Nucleoside permease NupG; Nucleoside-transport system protein NupG from Escherichia coli (strain K12) (see paper)
49% identity, 99% coverage: 1:413/418 of query aligns to 1:406/418 of P0AFF4

query
sites
P0AFF4
M
 
M
N
 
N
L
 
L
K
 
K
L
 
L
R
 
Q
L
 
L
I
 
K
I
 
I
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L
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Q
F
 
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C
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L
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W
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A
 
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W
M
 
L
M
 
T
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T
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L
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Y
 
Y
G
 
M
F
 
F
V
 
V
E
 
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L
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K
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F
N
 
D
G
 
G
A
 
A
E
 
S
F
 
I
G
 
G
L
 
A
V
 
V
F
 
Y
S
 
S
T
 
S
M
 
L
G
 
G
F
 
I
A
 
A
S
 
A
L
 
V
I
 
F
M
 
M
P
 
P
T
 
A
L
 
L
F
 
L
G
 
G
I
 
I
I
 
V
A
 
A
D
 
D
K
 
K
W
 
W
-
 
L
Q
 
S
A
 
A
K
 
K
Y
 
W
V
 
V
Y
 
Y
A
 
A
I
 
I
L
 
C
H
 
H
L
 
T
L
 
I
F
 
G
G
 
A
A
 
I
T
 
T
M
 
L
C
 
F
F
 
M
L
 
A
P
 
A
L
 
Q
I
 
V
D
 
T
A
 
T
P
 
P
M
 
E
P
 
A
F
 
M
F
 
F
W
 
L
V
 
V
L
 
I
L
 
L
V
 
I
A
 
N
M
 
S
S
 
F
F
 
A
Y
 
Y
M
 
M
P
 
P
T
 
T
I
 
L
G
 
G
L
 
L
N
 
I
N
 
N
S
 
T
I
 
I
G
 
S
F
 
Y
N
 
Y
V
 
R
L
 
L
K
 
Q
N
 
N
E
 
A
G
 
G
K
 
M
D
 
D
P
 
I
T
 
V
T
 
T
Y
 
D
F
 
F
P
 
P
P
 
P
I
 
I
R
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R
V
 
I
W
 
W
G
 
G
T
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T
V
 
I
G
 
G
F
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F
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I
V
 
M
A
 
A
M
 
M
W
 
W
I
 
V
T
 
V
N
 
S
L
 
L
F
 
S
T
 
-
K
 
-
E
 
-
W
 
-
G
 
G
F
 
F
G
 
E
Q
 
L
S
 
S
I
 
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K
 
H
V
 
M
S
 
Q
F
 
L
F
 
Y
I
 
I
A
 
G
A
 
A
I
 
A
M
 
L
A
 
S
F
 
A
A
 
I
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L
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V
L
 
L
F
 
F
S
 
T
F
 
L
I
 
T
F
 
L
-
 
P
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H
L
 
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P
 
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V
 
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V
 
A
K
 
K
K
 
Q
E
 
Q
P
 
-
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-
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-
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-
A
 
A
A
 
N
R
 
Q
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S
L
 
W
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T
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T
K
 
L
L
 
L
G
 
G
L
 
L
E
 
D
A
 
A
F
 
F
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A
L
 
L
F
 
F
K
 
K
Q
 
N
K
 
K
K
 
R
M
 
M
A
 
A
L
 
I
F
 
F
F
 
F
V
 
I
F
 
F
S
 
S
L
 
M
M
 
L
L
 
L
G
 
G
A
 
A
A
 
E
L
 
L
Q
|
Q
L
 
I
T
 
T
N
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N
A
 
M
Y
 
F
G
 
G
D
 
N
S
 
T
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F
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L
Q
 
H
D
 
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D
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K
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D
P
 
P
-
 
M
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F
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A
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S
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F
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I
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I
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I
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M
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I
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I
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S
E
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E
T
 
T
L
 
L
F
 
F
I
 
I
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L
A
 
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I
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P
F
 
F
F
 
F
M
 
L
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S
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R
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G
 
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I
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V
 
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M
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I
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R
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F
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A
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F
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A
L
 
Y
A
 
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D
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P
T
 
T
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P
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F
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G
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A
 
V
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L
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L
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L
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S
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M
I
 
I
I
 
V
Y
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Y
G
 
G
M
 
C
A
 
A
F
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F
D
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D
F
 
F
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F
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N
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I
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S
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G
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S
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V
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F
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V
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E
Q
 
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S
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P
S
 
A
I
 
I
Q
 
R
S
 
A
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A
 
A
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Q
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G
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M
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M
 
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M
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M
T
 
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N
 
N
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G
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F
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G
A
 
C
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I
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L
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I
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G
 
G
F
 
K
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V
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E
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M
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Y
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T
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Q
N
 
N
P
 
G
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I
T
 
T
H
 
-
A
 
-
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-
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D
W
 
W
P
 
Q
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T
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V
W
 
W
Y
 
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S
 
I
F
 
F
A
 
A
G
 
G
Y
 
Y
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S
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A
 
A
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F
L
 
A
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M
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A
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K
Y
 
Y
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K
H
 
H

Query Sequence

>WP_013444347.1 NCBI__GCF_000183135.1:WP_013444347.1
MNLKLRLIILNFLQFFVWGAWMMTLGHYGFVEKQWNGAEFGLVFSTMGFASLIMPTLFGI
IADKWQAKYVYAILHLLFGATMCFLPLIDAPMPFFWVLLVAMSFYMPTIGLNNSIGFNVL
KNEGKDPTTYFPPIRVWGTVGFIVAMWITNLFTKEWGFGQSIKVSFFIAAIMAFALSLFS
FIFLPVVKKEPKSLAARTLVQKLGLEAFVLFKQKKMALFFVFSLMLGAALQLTNAYGDSF
LQDADVFPKGGIINNFSTIILSISQISETLFILAIPFFMKRLGIKNVMLLSMLAWVLRFG
LFGLAGNTNIGFALIVSSCIIYGMAFDFFNISGALFVEQNTDSSIQSSAQGVFMLMTNGV
GAVLGNIIAGFVIAKWFENPITHAKDWPGIWYSFAGYALVVAILFSVLFRYKHNPKEA

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory