Comparing WP_013450567.1 NCBI__GCF_000183405.1:WP_013450567.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 20 (the maximum) hits to proteins with known functional sites (download)
5x40A Structure of a cbio dimer bound with amppcp (see paper)
37% identity, 95% coverage: 11:235/237 of query aligns to 10:239/280 of 5x40A
Q5M243 Energy-coupling factor transporter ATP-binding protein EcfA1; ECF transporter A component EcfA1; EC 7.-.-.- from Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) (see paper)
36% identity, 92% coverage: 6:224/237 of query aligns to 2:225/276 of Q5M243
8bmpB Cryo-em structure of the folate-specific ecf transporter complex in msp2n2 lipid nanodiscs bound to atp and adp (see paper)
33% identity, 97% coverage: 6:235/237 of query aligns to 2:243/281 of 8bmpB
5d3mB Folate ecf transporter: amppnp bound state (see paper)
33% identity, 97% coverage: 6:235/237 of query aligns to 2:243/281 of 5d3mB
8bmsB Cryo-em structure of the mutant solitary ecf module 2eq in msp2n2 lipid nanodiscs in the atpase closed and atp-bound conformation (see paper)
33% identity, 97% coverage: 6:235/237 of query aligns to 2:243/281 of 8bmsB
5d3mA Folate ecf transporter: amppnp bound state (see paper)
32% identity, 99% coverage: 2:235/237 of query aligns to 2:242/280 of 5d3mA
Q5M244 Energy-coupling factor transporter ATP-binding protein EcfA2; ECF transporter A component EcfA2; EC 3.6.3.- from Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) (see paper)
33% identity, 97% coverage: 6:235/237 of query aligns to 3:244/280 of Q5M244
8bmpA Cryo-em structure of the folate-specific ecf transporter complex in msp2n2 lipid nanodiscs bound to atp and adp (see paper)
32% identity, 94% coverage: 14:235/237 of query aligns to 12:239/278 of 8bmpA
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
35% identity, 86% coverage: 20:224/237 of query aligns to 15:224/240 of 4ymuJ
Sites not aligning to the query:
8bmsA Cryo-em structure of the mutant solitary ecf module 2eq in msp2n2 lipid nanodiscs in the atpase closed and atp-bound conformation (see paper)
32% identity, 94% coverage: 14:235/237 of query aligns to 11:239/278 of 8bmsA
4hluC Structure of the ecfa-a' heterodimer bound to adp (see paper)
37% identity, 95% coverage: 6:229/237 of query aligns to 5:229/249 of 4hluC
6z4wA Ftse structure from streptococcus pneumoniae in complex with adp (space group p 1) (see paper)
34% identity, 89% coverage: 6:215/237 of query aligns to 4:218/230 of 6z4wA
A0A0H2ZM82 Cell division ATP-binding protein FtsE from Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) (see paper)
34% identity, 89% coverage: 6:215/237 of query aligns to 4:218/230 of A0A0H2ZM82
6z67B Ftse structure of streptococcus pneumoniae in complex with amppnp at 2.4 a resolution (see paper)
34% identity, 89% coverage: 6:215/237 of query aligns to 4:218/229 of 6z67B
4zirB Crystal structure of ecfaa' heterodimer bound to amppnp (see paper)
36% identity, 95% coverage: 6:229/237 of query aligns to 4:225/247 of 4zirB
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
32% identity, 93% coverage: 4:224/237 of query aligns to 1:230/344 of 6cvlD
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
32% identity, 93% coverage: 4:224/237 of query aligns to 1:230/344 of 3tuzC
Sites not aligning to the query:
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
32% identity, 93% coverage: 4:224/237 of query aligns to 1:230/344 of 3tuiC
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
32% identity, 92% coverage: 6:224/237 of query aligns to 2:229/343 of P30750
Sites not aligning to the query:
P0AAH0 Phosphate import ATP-binding protein PstB; ABC phosphate transporter; Phosphate-transporting ATPase; EC 7.3.2.1 from Escherichia coli (strain K12) (see paper)
33% identity, 92% coverage: 6:224/237 of query aligns to 11:240/257 of P0AAH0
Sites not aligning to the query:
>WP_013450567.1 NCBI__GCF_000183405.1:WP_013450567.1
MSHHYIQVTDLSYTYPDGTKVLKNITFRVNHGDSVAVLGENGSGKTTLLKHLNGTILPME
GEIDVGGVFISKKTLTLIRTKVGMVFQNTDNQLFMPTVEDNIVFGLSELGLSDANIKTIL
KSIAEELKISHLLKKHPFKLSGGEKRKICIASVLASSPEILILDEPTSELDPKSSYEIAQ
ILSNFQHTKIIATHNLDLAQRICNRSILIKNGEILYYGDTKELFRDLSILREANLIF
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory