SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_013450664.1 NCBI__GCF_000183405.1:WP_013450664.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

1us4A Putative glur0 ligand binding core with l-glutamate (see paper)
38% identity, 92% coverage: 24:322/324 of query aligns to 2:296/297 of 1us4A

query
sites
1us4A
Q
 
Q
T
 
E
F
 
F
V
 
I
T
 
T
I
 
I
G
 
G
T
 
S
G
 
G
G
 
S
V
 
T
T
 
T
G
 
G
V
|
V
Y
|
Y
Y
 
F
P
 
P
V
 
V
G
 
A
G
 
T
A
 
G
I
 
I
A
 
A
R
 
K
L
 
L
V
 
V
N
 
N
A
 
-
K
 
-
K
 
D
A
 
A
Q
 
N
Y
 
V
N
 
G
I
 
I
K
 
R
A
 
A
T
 
N
V
 
A
E
 
R
S
 
S
T
 
T
G
 
G
G
 
G
S
|
S
V
 
V
Y
 
A
N
 
N
I
 
I
N
 
N
S
 
A
V
 
I
L
 
N
S
 
A
G
 
G
D
 
E
L
 
F
E
 
E
F
 
M
G
 
A
I
 
L
A
 
A
Q
|
Q
A
 
N
D
 
D
L
 
I
T
 
A
Y
 
Y
Q
 
Y
A
 
A
Y
 
Y
H
 
Q
G
 
G
Q
 
C
G
 
C
A
 
I
W
 
P
K
 
A
D
 
F
K
 
E
G
 
G
A
 
K
Q
 
P
-
 
V
K
 
K
K
 
T
L
 
I
A
 
R
V
 
A
V
 
L
F
 
A
G
 
A
L
 
L
H
 
Y
N
 
P
E
|
E
F
 
V
V
 
V
T
 
H
L
 
V
V
 
V
A
 
A
S
 
R
A
 
K
N
 
D
S
 
A
G
 
G
I
 
I
N
 
R
G
 
T
I
 
V
P
 
A
D
 
D
L
 
L
K
 
K
G
 
G
K
 
K
R
 
R
V
 
V
N
 
V
L
 
V
G
 
G
G
 
D
V
 
V
G
 
G
S
|
S
G
|
G
Q
x
T
L
 
E
E
 
Q
N
 
N
S
 
A
R
 
R
D
 
Q
L
 
I
L
 
L
K
 
E
A
 
A
F
 
Y
G
 
G
L
 
L
K
 
T
E
 
F
S
 
D
D
 
D
L
 
L
-
 
G
K
 
Q
A
 
A
E
 
I
Y
 
R
I
 
V
K
 
S
P
 
A
V
 
S
E
 
Q
S
 
G
A
 
I
G
 
Q
L
 
L
I
 
M
Q
 
Q
D
 
D
E
 
K
R
 
R
L
 
A
D
 
D
A
 
A
F
 
L
F
 
F
Y
 
Y
T
|
T
V
|
V
G
 
G
H
 
L
P
 
-
N
 
G
G
 
A
S
 
S
V
 
A
S
 
I
E
 
Q
A
 
Q
T
 
L
S
 
A
G
 
L
R
 
T
I
 
T
K
 
P
V
 
I
K
 
A
I
 
L
V
 
V
P
 
A
I
 
V
T
 
D
G
 
L
T
 
N
P
 
R
V
 
I
E
 
Q
K
 
A
L
 
I
I
 
A
K
 
K
E
 
K
L
 
Y
P
 
P
Y
 
F
Y
 
Y
S
 
V
K
 
G
G
 
F
Y
 
N
I
 
I
P
 
P
V
 
G
S
 
G
L
 
T
Y
 
Y
P
 
K
N
 
G
A
 
V
A
 
-
N
 
-
A
 
-
K
 
-
D
 
D
G
 
V
K
 
T
V
 
T
P
 
P
S
 
T
I
 
V
G
 
A
I
 
V
Q
 
Q
A
 
A
L
 
M
L
 
L
V
 
I
T
 
A
S
 
S
T
 
E
D
 
R
V
 
L
P
 
S
A
 
E
D
 
E
V
 
T
V
 
V
Y
 
Y
A
 
K
I
 
F
T
 
M
K
 
K
E
 
A
V
 
V
V
 
F
E
 
G
N
 
N
I
 
L
Q
 
E
E
 
A
F
 
F
K
 
K
K
 
K
L
 
I
H
 
H
P
 
P
A
 
N
L
 
L
G
 
E
G
 
R
-
 
F
L
 
F
D
 
G
I
 
L
E
 
E
D
 
K
M
 
A
V
 
V
N
 
K
V
 
G
N
 
L
V
 
P
A
 
I
P
 
P
L
 
L
H
 
H
P
 
P
G
 
G
A
 
A
L
 
E
K
 
R
Y
 
F
F
 
Y
K
 
K
E
 
E
K
 
A
G
 
G
L
 
V

Sites not aligning to the query:

Query Sequence

>WP_013450664.1 NCBI__GCF_000183405.1:WP_013450664.1
MKKILVMLMAFSVIFSGSIFAAKQTFVTIGTGGVTGVYYPVGGAIARLVNAKKAQYNIKA
TVESTGGSVYNINSVLSGDLEFGIAQADLTYQAYHGQGAWKDKGAQKKLAVVFGLHNEFV
TLVASANSGINGIPDLKGKRVNLGGVGSGQLENSRDLLKAFGLKESDLKAEYIKPVESAG
LIQDERLDAFFYTVGHPNGSVSEATSGRIKVKIVPITGTPVEKLIKELPYYSKGYIPVSL
YPNAANAKDGKVPSIGIQALLVTSTDVPADVVYAITKEVVENIQEFKKLHPALGGLDIED
MVNVNVAPLHPGALKYFKEKGLKK

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory