SitesBLAST
Comparing WP_013450717.1 NCBI__GCF_000183405.1:WP_013450717.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 20 (the maximum) hits to proteins with known functional sites (download)
1kl2A Crystal structure of serine hydroxymethyltransferase complexed with glycine and 5-formyl tetrahydrofolate (see paper)
66% identity, 95% coverage: 9:407/418 of query aligns to 6:404/405 of 1kl2A
- active site: Y51 (= Y54), E53 (= E56), D197 (= D200), T223 (= T226), K226 (= K229), R232 (= R235)
- binding N-{[4-({[(6R)-2-amino-5-formyl-4-oxo-1,4,5,6,7,8-hexahydropteridin-6-yl]methyl}amino)phenyl]carbonyl}-L-glutamic acid: E53 (= E56), Y60 (= Y63), G121 (= G124), H122 (= H125), S172 (= S175), F251 (= F254), N341 (= N344)
- binding glycine: S31 (= S34), Y51 (= Y54), Y61 (= Y64), H200 (= H203), R357 (= R360)
- binding pyridoxal-5'-phosphate: S93 (= S96), G94 (= G97), A95 (≠ S98), H122 (= H125), S172 (= S175), D197 (= D200), A199 (= A202), H200 (= H203), T223 (= T226), H225 (= H228), K226 (= K229)
1kl1A Crystal structure of serine hydroxymethyltransferase complexed with glycine (see paper)
66% identity, 95% coverage: 9:407/418 of query aligns to 6:404/405 of 1kl1A
- active site: Y51 (= Y54), E53 (= E56), D197 (= D200), T223 (= T226), K226 (= K229), R232 (= R235)
- binding glycine: S31 (= S34), H122 (= H125), R357 (= R360)
- binding pyridoxal-5'-phosphate: S93 (= S96), G94 (= G97), A95 (≠ S98), H122 (= H125), A171 (= A174), S172 (= S175), D197 (= D200), A199 (= A202), H200 (= H203), T223 (= T226), H225 (= H228), K226 (= K229)
1kkpA Crystal structure of serine hydroxymethyltransferase complexed with serine (see paper)
66% identity, 95% coverage: 9:407/418 of query aligns to 6:404/405 of 1kkpA
- active site: Y51 (= Y54), E53 (= E56), D197 (= D200), T223 (= T226), K226 (= K229), R232 (= R235)
- binding pyridoxal-5'-phosphate: S93 (= S96), G94 (= G97), A95 (≠ S98), H122 (= H125), S172 (= S175), D197 (= D200), A199 (= A202), H200 (= H203), K226 (= K229)
- binding serine: S31 (= S34), H122 (= H125), R357 (= R360)
1kkjA Crystal structure of serine hydroxymethyltransferase from b.Stearothermophilus (see paper)
66% identity, 95% coverage: 9:407/418 of query aligns to 6:404/405 of 1kkjA
- active site: Y51 (= Y54), E53 (= E56), D197 (= D200), T223 (= T226), K226 (= K229), R232 (= R235)
- binding pyridoxal-5'-phosphate: S93 (= S96), G94 (= G97), A95 (≠ S98), H122 (= H125), S172 (= S175), D197 (= D200), A199 (= A202), H200 (= H203), T223 (= T226), H225 (= H228), K226 (= K229)
2vmyA Crystal structure of f351gbsshmt in complex with gly and fthf (see paper)
66% identity, 95% coverage: 9:407/418 of query aligns to 6:404/405 of 2vmyA
- active site: Y51 (= Y54), E53 (= E56), D197 (= D200), T223 (= T226), K226 (= K229), R232 (= R235)
- binding N-[4-({[(6S)-2-amino-5-formyl-4-oxo-3,4,5,6,7,8-hexahydropteridin-6-yl]methyl}amino)benzoyl]-L-glutamic acid: E53 (= E56), Y60 (= Y63), Y61 (= Y64), L117 (= L120), G121 (= G124), H122 (= H125), L123 (= L126), S172 (= S175), K248 (≠ S251), F251 (= F254), N341 (= N344), S349 (= S352), P350 (= P353), G351 (≠ F354), R357 (= R360)
- binding glycine: S31 (= S34), Y51 (= Y54), Y61 (= Y64), H200 (= H203), K226 (= K229), R357 (= R360)
- binding pyridoxal-5'-phosphate: Y51 (= Y54), S93 (= S96), G94 (= G97), A95 (≠ S98), H122 (= H125), S172 (= S175), D197 (= D200), A199 (= A202), H200 (= H203), T223 (= T226), K226 (= K229), G257 (= G260)
2vmxA Crystal structure of f351gbsshmt in complex with l-allo-thr (see paper)
66% identity, 95% coverage: 9:407/418 of query aligns to 6:404/405 of 2vmxA
- active site: Y51 (= Y54), E53 (= E56), D197 (= D200), T223 (= T226), K226 (= K229), R232 (= R235)
- binding allo-threonine: S31 (= S34), H122 (= H125), H200 (= H203), R357 (= R360)
- binding pyridoxal-5'-phosphate: S93 (= S96), G94 (= G97), A95 (≠ S98), H122 (= H125), S172 (= S175), D197 (= D200), A199 (= A202), H200 (= H203), T223 (= T226), K226 (= K229)
4ot8A X-ray crystal structure of serine hydroxymethyl transferase from burkholderia cenocepacia bound to plp and serine
65% identity, 98% coverage: 5:414/418 of query aligns to 6:414/414 of 4ot8A
- active site: Y55 (= Y54), E57 (= E56), D200 (= D200), T226 (= T226), K229 (= K229), R235 (= R235)
- binding pyridoxal-5'-phosphate: S97 (= S96), G98 (= G97), S99 (= S98), H126 (= H125), D200 (= D200), A202 (= A202), H203 (= H203), K229 (= K229)
- binding serine: S35 (= S34), E57 (= E56), Y65 (= Y64), H126 (= H125), H203 (= H203), R360 (= R360)
4otlA X-ray crystal structure of serine hydroxymethyl transferase from burkholderia cenocepacia bound to plp and glycine
65% identity, 98% coverage: 5:414/418 of query aligns to 1:409/409 of 4otlA
- active site: Y50 (= Y54), E52 (= E56), D195 (= D200), T221 (= T226), K224 (= K229), R230 (= R235)
- binding glycine: S30 (= S34), Y50 (= Y54), Y60 (= Y64), H121 (= H125), K224 (= K229), R355 (= R360)
- binding pyridoxal-5'-phosphate: S92 (= S96), G93 (= G97), S94 (= S98), H121 (= H125), S170 (= S175), D195 (= D200), A197 (= A202), H198 (= H203), K224 (= K229)
4n0wA X-ray crystal structure of a serine hydroxymethyltransferase from burkholderia cenocepacia with covalently attached pyridoxal phosphate
65% identity, 98% coverage: 5:414/418 of query aligns to 8:416/416 of 4n0wA
- active site: Y57 (= Y54), E59 (= E56), D202 (= D200), T228 (= T226), K231 (= K229), R237 (= R235)
- binding pyridoxal-5'-phosphate: S99 (= S96), G100 (= G97), S101 (= S98), H128 (= H125), D202 (= D200), A204 (= A202), H205 (= H203), K231 (= K229)
3pgyB Serine hydroxymethyltransferase from staphylococcus aureus, s95p mutant.
63% identity, 97% coverage: 7:413/418 of query aligns to 4:404/404 of 3pgyB
1dfoB Crystal structure at 2.4 angstrom resolution of e. Coli serine hydroxymethyltransferase in complex with glycine and 5-formyl tetrahydrofolate (see paper)
64% identity, 96% coverage: 11:413/418 of query aligns to 12:416/417 of 1dfoB