SitesBLAST
Comparing WP_013450727.1 NCBI__GCF_000183405.1:WP_013450727.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
8a56B Coenzyme a-persulfide reductase (coapr) from enterococcus faecalis (see paper)
41% identity, 97% coverage: 4:547/559 of query aligns to 2:536/539 of 8a56B
- binding flavin-adenine dinucleotide: I6 (= I8), G7 (= G9), V9 (= V11), G11 (≠ A13), E32 (= E34), K33 (= K35), C42 (= C44), V80 (≠ A82), S109 (≠ C112), P110 (≠ N113), G111 (= G114), I159 (= I162), G278 (= G283), D279 (= D284), S295 (≠ P300), L296 (= L301), A297 (= A302), Y422 (= Y427), A423 (≠ S428)
- binding 3'-phosphate-adenosine-5'-diphosphate: T17 (≠ A19), R18 (≠ K20), R21 (= R23), F70 (≠ Y72), R305 (= R310), I356 (≠ T361), K430 (= K435), M435 (≠ I440), Y438 (≠ L443), G505 (= G515), L506 (≠ Y516), Y509 (= Y519)
3ictA Crystal structure of reduced bacillus anthracis coadr-rhd (see paper)
40% identity, 93% coverage: 20:540/559 of query aligns to 23:545/557 of 3ictA
- active site: I42 (≠ V39), N46 (= N43), C47 (= C44), N309 (= N306), S430 (≠ C426), F456 (vs. gap), V457 (≠ S452)
- binding coenzyme a: R23 (≠ K20), R26 (= R23), S43 (= S40), N46 (= N43), C47 (= C44), N309 (= N306), R313 (= R310), K439 (= K435), N451 (= N447), G520 (= G515), M521 (≠ Y516), Y524 (= Y519)
- binding flavin-adenine dinucleotide: E37 (= E34), R38 (≠ K35), N46 (= N43), C47 (= C44), V85 (≠ A82), S116 (≠ C112), P117 (≠ N113), G118 (= G114), L138 (≠ V133), G286 (= G283), D287 (= D284), P303 (= P300), L304 (= L301), A305 (= A302)
Sites not aligning to the query:
3icsB Crystal structure of partially reduced bacillus anthracis coadr-rhd (see paper)
40% identity, 93% coverage: 20:540/559 of query aligns to 20:542/554 of 3icsB
- active site: I39 (≠ V39), N43 (= N43), C44 (= C44), N306 (= N306), S427 (≠ C426), F453 (vs. gap), V454 (≠ S452)
- binding adenosine-5'-diphosphate: G162 (= G160), I164 (= I162), E183 (= E181), M184 (≠ A182), P190 (= P188), I244 (≠ T244), G245 (= G245)
- binding coenzyme a: R20 (≠ K20), R23 (= R23), S40 (= S40), N43 (= N43), C44 (= C44), N306 (= N306), R310 (= R310), Y428 (= Y427), K436 (= K435), M441 (≠ I440), Y444 (≠ L443), A445 (≠ V444), N448 (= N447), G517 (= G515), M518 (≠ Y516), Y521 (= Y519)
- binding flavin-adenine dinucleotide: E34 (= E34), R35 (≠ K35), N43 (= N43), C44 (= C44), V82 (≠ A82), S113 (≠ C112), P114 (≠ N113), G115 (= G114), L135 (≠ V133), R136 (= R134), I164 (= I162), L252 (= L252), G283 (= G283), D284 (= D284), P300 (= P300), L301 (= L301), A302 (= A302), A305 (= A305)
Sites not aligning to the query:
3nt6A Structure of the shewanella loihica pv-4 nadh-dependent persulfide reductase c43s/c531s double mutant (see paper)
39% identity, 97% coverage: 3:543/559 of query aligns to 2:562/565 of 3nt6A
- active site: A11 (= A12), V38 (= V39), N42 (= N43), S43 (≠ C44), N325 (= N306), D471 (≠ S452), A472 (≠ I455)
- binding coenzyme a: A11 (= A12), A18 (= A19), R19 (≠ K20), R22 (= R23), S39 (= S40), N42 (= N43), S43 (≠ C44), A321 (= A302), N325 (= N306), R329 (= R310), Q459 (≠ I440), F462 (≠ L443), V463 (= V444), N466 (= N447), G534 (= G515), L535 (≠ Y516)
- binding flavin-adenine dinucleotide: I7 (= I8), G8 (= G9), V10 (= V11), A11 (= A12), G12 (≠ A13), E33 (= E34), R34 (≠ K35), N42 (= N43), S43 (≠ C44), E80 (= E81), V81 (≠ A82), S112 (≠ C112), P113 (≠ N113), G114 (= G114), L133 (≠ V133), R134 (= R134), F161 (≠ Y161), G302 (= G283), D303 (= D284), P319 (= P300), L320 (= L301), A321 (= A302)
6pfzA Structure of a NAD-dependent persulfide reductase from a. Fulgidus (see paper)
37% identity, 96% coverage: 5:538/559 of query aligns to 3:535/541 of 6pfzA
- active site: V37 (= V39), C42 (= C44), L455 (= L454), F456 (≠ I455)
- binding calcium ion: D306 (≠ G303), T332 (= T329), D427 (= D424), L428 (≠ F425)
- binding coenzyme a: K14 (≠ T16), R18 (≠ K20), R21 (= R23), S38 (= S40), G40 (≠ A42), C42 (= C44), K76 (≠ Y72), R313 (= R310), Y430 (= Y427), V447 (= V444), G512 (= G515), L513 (≠ Y516), F516 (≠ Y519)
- binding flavin-adenine dinucleotide: G7 (= G9), A11 (= A13), E32 (= E34), A33 (≠ K35), R41 (≠ N43), C42 (= C44), A86 (= A82), A115 (≠ C112), T116 (≠ N113), G117 (= G114), L136 (≠ V133), G286 (= G283), D287 (= D284), P303 (= P300), F304 (≠ L301), G305 (≠ A302)
3cgeA Pyridine nucleotide complexes with bacillus anthracis coenzyme a- disulfide reductase: a structural analysis of dual NAD(p)h specificity (see paper)
32% identity, 78% coverage: 6:439/559 of query aligns to 4:437/444 of 3cgeA
- active site: A10 (= A12), Y37 (≠ V39), Q41 (≠ N43), C42 (= C44), N304 (= N306)
- binding coenzyme a: M17 (≠ A19), R21 (= R23), S38 (= S40), C42 (= C44), R61 (≠ Q63), N304 (= N306), R308 (= R310)
- binding flavin-adenine dinucleotide: I6 (= I8), D9 (≠ V11), A10 (= A12), A11 (= A13), L31 (= L33), E32 (= E34), K33 (= K35), Q41 (≠ N43), C42 (= C44), V80 (≠ A82), T112 (≠ N113), G113 (= G114), G281 (= G283), D282 (= D284), I299 (≠ L301), G300 (≠ A302), A303 (= A305), Y425 (= Y427), A426 (≠ S428)
- binding nadph dihydro-nicotinamide-adenine-dinucleotide phosphate: I156 (= I157), G157 (= G158), A160 (≠ Y161), I161 (= I162), E164 (= E165), E180 (= E181), R181 (≠ A182), N182 (≠ L183), T187 (≠ P188), V242 (≠ T244), G243 (= G245), P298 (= P300), I299 (≠ L301)
Sites not aligning to the query:
3cgdA Pyridine nucleotide complexes with bacillus anthracis coenzyme a- disulfide reductase: a structural analysis of dual NAD(p)h specificity (see paper)
32% identity, 78% coverage: 6:439/559 of query aligns to 4:437/444 of 3cgdA
- active site: A10 (= A12), Y37 (≠ V39), Q41 (≠ N43), C42 (= C44), N304 (= N306)
- binding coenzyme a: M17 (≠ A19), Q18 (≠ K20), R21 (= R23), S38 (= S40), Y39 (≠ F41), C42 (= C44), R61 (≠ Q63), N304 (= N306), R308 (= R310)
- binding flavin-adenine dinucleotide: I6 (= I8), G7 (= G9), D9 (≠ V11), A10 (= A12), A11 (= A13), L31 (= L33), E32 (= E34), K33 (= K35), Q41 (≠ N43), C42 (= C44), V80 (≠ A82), A111 (≠ C112), T112 (≠ N113), G281 (= G283), D282 (= D284), I299 (≠ L301), G300 (≠ A302), A303 (= A305), Y425 (= Y427), A426 (≠ S428)
- binding nicotinamide-adenine-dinucleotide: I156 (= I157), G157 (= G158), G159 (= G160), A160 (≠ Y161), I161 (= I162), E164 (= E165), E180 (= E181), R181 (≠ A182), V242 (≠ T244), G243 (= G245), P298 (= P300), I299 (≠ L301)
Sites not aligning to the query:
3cgbA Pyridine nucleotide complexes with bacillus anthracis coenzyme a- disulfide reductase: a structural analysis of dual NAD(p)h specificity (see paper)
32% identity, 78% coverage: 6:439/559 of query aligns to 4:437/444 of 3cgbA
- active site: A10 (= A12), Y37 (≠ V39), Q41 (≠ N43), C42 (= C44), N304 (= N306)
- binding coenzyme a: D9 (≠ V11), A10 (= A12), M17 (≠ A19), R21 (= R23), S38 (= S40), Y39 (≠ F41), C42 (= C44), R61 (≠ Q63), N304 (= N306), R308 (= R310), V432 (≠ A434)
- binding flavin-adenine dinucleotide: I6 (= I8), G7 (= G9), D9 (≠ V11), A10 (= A12), A11 (= A13), E32 (= E34), K33 (= K35), Q41 (≠ N43), C42 (= C44), V80 (≠ A82), T112 (≠ N113), L132 (≠ V133), I161 (= I162), G281 (= G283), D282 (= D284), I299 (≠ L301), G300 (≠ A302), A303 (= A305), Y425 (= Y427), A426 (≠ S428)
Sites not aligning to the query:
6rvhA Nadh-dependent coenzyme a disulfide reductase soaked with menadione (see paper)
32% identity, 79% coverage: 1:441/559 of query aligns to 1:438/443 of 6rvhA
- active site: V39 (= V39), C44 (= C44), E53 (≠ V53), E58 (≠ N58), Y159 (= Y161), E163 (= E165), A425 (≠ S428), P430 (≠ A433)
- binding coenzyme a: K20 (= K20), R23 (= R23), S40 (= S40), Y41 (≠ F41), C44 (= C44), R63 (≠ Q63), N303 (= N306), R307 (= R310), Q359 (≠ E362), V431 (≠ A434), I437 (= I440)
- binding flavin-adenine dinucleotide: V8 (≠ I8), V11 (= V11), A12 (= A12), G13 (≠ A13), E34 (= E34), K35 (= K35), A43 (≠ N43), C44 (= C44), V81 (≠ A82), T113 (≠ N113), G114 (= G114), R134 (= R134), Y159 (= Y161), G280 (= G283), D281 (= D284), P297 (= P300), L298 (= L301), G299 (≠ A302), Y424 (= Y427), A425 (≠ S428)
- binding menadione: A364 (≠ V367), H365 (≠ E368), P430 (≠ A433), V431 (≠ A434)
Sites not aligning to the query:
6rvbA Nadh-dependent coenzyme a disulfide reductase soaked with nadh (see paper)
32% identity, 79% coverage: 1:441/559 of query aligns to 1:438/443 of 6rvbA
- active site: V39 (= V39), C44 (= C44), E53 (≠ V53), E58 (≠ N58), Y159 (= Y161), E163 (= E165), A425 (≠ S428), P430 (≠ A433)
- binding coenzyme a: A15 (= A15), K20 (= K20), R23 (= R23), S40 (= S40), Y41 (≠ F41), C44 (= C44), R63 (≠ Q63), N303 (= N306), R307 (= R310), Q359 (≠ E362), I437 (= I440)
- binding flavin-adenine dinucleotide: V8 (≠ I8), V11 (= V11), A12 (= A12), G13 (≠ A13), Y33 (≠ L33), E34 (= E34), K35 (= K35), S36 (≠ N36), A43 (≠ N43), C44 (= C44), E80 (= E81), V81 (≠ A82), T113 (≠ N113), G114 (= G114), L133 (≠ V133), R134 (= R134), I160 (= I162), G280 (= G283), D281 (= D284), L298 (= L301), G299 (≠ A302), Y424 (= Y427), A425 (≠ S428)
- binding nicotinamide-adenine-dinucleotide: G156 (= G158), G158 (= G160), Y159 (= Y161), I160 (= I162), E179 (= E181), A180 (= A182), A240 (= A243), T241 (= T244), G242 (= G245), P297 (= P300), I328 (= I331), F329 (≠ V332)
Sites not aligning to the query:
6ruzA Nadh-dependent coenzyme a disulfide reductase (see paper)
32% identity, 79% coverage: 1:441/559 of query aligns to 1:438/443 of 6ruzA
- active site: V39 (= V39), C44 (= C44), E53 (≠ V53), E58 (≠ N58), Y159 (= Y161), E163 (= E165), A425 (≠ S428), P430 (≠ A433)
- binding coenzyme a: A15 (= A15), A19 (= A19), K20 (= K20), R23 (= R23), S40 (= S40), Y41 (≠ F41), C44 (= C44), R63 (≠ Q63), N303 (= N306), R307 (= R310), Q359 (≠ E362)
- binding flavin-adenine dinucleotide: V8 (≠ I8), V11 (= V11), A12 (= A12), G13 (≠ A13), Y33 (≠ L33), E34 (= E34), K35 (= K35), A43 (≠ N43), C44 (= C44), E80 (= E81), V81 (≠ A82), T113 (≠ N113), G114 (= G114), A115 (= A115), L133 (≠ V133), R134 (= R134), Y159 (= Y161), G280 (= G283), D281 (= D284), P297 (= P300), L298 (= L301), G299 (≠ A302), Y424 (= Y427), A425 (≠ S428)
Sites not aligning to the query:
O58308 NAD(P)H coenzyme A polysulfide/persulfide reductase; Coenzyme A disulfide reductase; CoA-disulfide reductase; CoADR; Polysulfide reductase; EC 1.8.1.-; EC 1.8.1.14 from Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) (see 2 papers)
33% identity, 78% coverage: 1:438/559 of query aligns to 5:436/445 of O58308
- AA 16:17 (= AA 12:13) binding FAD
- R27 (= R23) binding CoA
- EA 38:39 (≠ EK 34:35) binding FAD
- SHAPC 44:48 (≠ SFANC 40:44) binding CoA
- HAP 45:47 (≠ FAN 41:43) binding FAD
- YY 65:66 (≠ LQ 62:63) binding CoA
- R75 (≠ Y72) binding CoA
- V85 (≠ A82) binding FAD
- D283 (= D284) binding FAD
- A301 (= A302) binding FAD
- N305 (= N306) binding CoA
- K361 (≠ E362) binding CoA
- Y425 (= Y427) binding FAD
- W433 (≠ K435) binding CoA
Sites not aligning to the query:
4fx9B Structure of the pyrococcus horikoshii coa persulfide/polysulfide reductase (see paper)
33% identity, 78% coverage: 1:438/559 of query aligns to 1:432/443 of 4fx9B
- active site: A12 (= A12), V39 (= V39), P43 (≠ N43), C44 (= C44), S54 (≠ K55), D57 (≠ N58), Y157 (= Y161), E161 (= E165), N301 (= N306), A420 (≠ C426), A422 (≠ S428), P427 (≠ A433)
- binding coenzyme a: A12 (= A12), M15 (≠ A15), S16 (≠ T16), R23 (= R23), S40 (= S40), H41 (≠ F41), C44 (= C44), Y61 (≠ L62), Y62 (≠ Q63), R71 (≠ Y72), A297 (= A302), N301 (= N306), I356 (≠ T361), V428 (≠ A434), W429 (≠ K435)
- binding flavin-adenine dinucleotide: G11 (≠ V11), A13 (= A13), F33 (≠ L33), E34 (= E34), A35 (≠ K35), H41 (≠ F41), P43 (≠ N43), C44 (= C44), V81 (≠ A82), N109 (= N113), A129 (≠ V133), D130 (≠ R134), L131 (≠ S135), Y157 (= Y161), I158 (= I162), G278 (= G283), D279 (= D284), P295 (= P300), L296 (= L301), A297 (= A302), Y421 (= Y427), A422 (≠ S428)
Sites not aligning to the query:
4emwA Crystal structure of staphylococcus aureus bound with the covalent inhibitor etvc-coa (see paper)
31% identity, 77% coverage: 16:445/559 of query aligns to 14:436/436 of 4emwA
- active site: N41 (= N43), C42 (= C44), T135 (≠ M139), I138 (= I142), D139 (≠ K143), Y157 (= Y161), E161 (= E165), H298 (≠ N306)
- binding ethyl 5-[3-[[(2R)-4-[[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]pentanoate: T14 (= T16), S17 (≠ A19), Q18 (≠ K20), R21 (= R23), S38 (= S40), A40 (= A42), N41 (= N43), C42 (= C44), Y61 (≠ Q63), K70 (≠ Y72), A294 (= A302), H298 (≠ N306), Y418 (= Y427), K426 (= K435), M431 (≠ I440)
- binding flavin-adenine dinucleotide: E32 (= E34), K33 (= K35), N41 (= N43), C42 (= C44), P45 (= P47), V80 (≠ A82), S111 (≠ C112), P112 (≠ N113), G113 (= G114), R130 (= R134), Y157 (= Y161), F244 (≠ L252), G275 (= G283), D276 (= D284), P292 (= P300), L293 (= L301), A294 (= A302), Y418 (= Y427), A419 (≠ S428)
Sites not aligning to the query:
4em4A Crystal structure of staphylococcus aureus bound with the covalent inhibitor pethyl-vs-coa (see paper)
31% identity, 77% coverage: 16:445/559 of query aligns to 14:436/437 of 4em4A
- active site: N41 (= N43), C42 (= C44), T135 (≠ M139), I138 (= I142), D139 (≠ K143), Y157 (= Y161), E161 (= E165), H298 (≠ N306)
- binding [[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(3R)-2,2-dimethyl-3-oxidanyl-4-oxidanylidene-4-[[3-oxidanylidene-3-[4-(phenylsulfonyl)butylamino]propyl]amino]butyl] hydrogen phosphate: T14 (= T16), S17 (≠ A19), Q18 (≠ K20), R21 (= R23), S38 (= S40), F39 (= F41), A40 (= A42), N41 (= N43), C42 (= C44), K70 (≠ Y72), A294 (= A302), H298 (≠ N306), Y360 (= Y369), Y418 (= Y427), P425 (≠ A434), M431 (≠ I440)
- binding flavin-adenine dinucleotide: F31 (≠ L33), E32 (= E34), K33 (= K35), N41 (= N43), C42 (= C44), V80 (≠ A82), S111 (≠ C112), P112 (≠ N113), G113 (= G114), R130 (= R134), Y157 (= Y161), F244 (≠ L252), G275 (= G283), D276 (= D284), P292 (= P300), L293 (= L301), A294 (= A302), Y418 (= Y427), A419 (≠ S428)
Sites not aligning to the query:
4em3A Crystal structure of staphylococcus aureus bound with the covalent inhibitor mevs-coa (see paper)
31% identity, 77% coverage: 16:445/559 of query aligns to 14:436/437 of 4em3A
- active site: N41 (= N43), C42 (= C44), T135 (≠ M139), I138 (= I142), D139 (≠ K143), Y157 (= Y161), E161 (= E165), H298 (≠ N306)
- binding [[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(3R)-2,2-dimethyl-4-[[3-(4-methylsulfonylbutylamino)-3-oxidanylidene-propyl]amino]-3-oxidanyl-4-oxidanylidene-butyl] hydrogen phosphate: T14 (= T16), S17 (≠ A19), Q18 (≠ K20), R21 (= R23), S38 (= S40), F39 (= F41), A40 (= A42), N41 (= N43), C42 (= C44), H298 (≠ N306), Y360 (= Y369), Y418 (= Y427), K426 (= K435), M431 (≠ I440), Y434 (≠ L443)
- binding flavin-adenine dinucleotide: F31 (≠ L33), E32 (= E34), K33 (= K35), N41 (= N43), C42 (= C44), V80 (≠ A82), S111 (≠ C112), P112 (≠ N113), G113 (= G114), R130 (= R134), Y157 (= Y161), G275 (= G283), D276 (= D284), P292 (= P300), L293 (= L301), A294 (= A302), Y418 (= Y427), A419 (≠ S428)
Sites not aligning to the query:
1yqzA Structure of coenzyme a-disulfide reductase from staphylococcus aureus refined at 1.54 angstrom resolution (see paper)
31% identity, 77% coverage: 16:445/559 of query aligns to 14:436/437 of 1yqzA
- active site: N41 (= N43), C42 (= C44), T135 (≠ M139), I138 (= I142), D139 (≠ K143), Y157 (= Y161), E161 (= E165), H298 (≠ N306)
- binding chloride ion: A40 (= A42), C42 (= C44), N84 (≠ D86), E86 (≠ D88)
- binding coenzyme a: T14 (= T16), S17 (≠ A19), Q18 (≠ K20), R21 (= R23), S38 (= S40), F39 (= F41), N41 (= N43), C42 (= C44), Y61 (≠ Q63), A294 (= A302), H298 (≠ N306), P425 (≠ A434), K426 (= K435), M431 (≠ I440)
- binding flavin-adenine dinucleotide: F31 (≠ L33), E32 (= E34), K33 (= K35), N41 (= N43), C42 (= C44), V80 (≠ A82), S111 (≠ C112), P112 (≠ N113), G113 (= G114), R130 (= R134), Y157 (= Y161), V158 (≠ I162), F244 (≠ L252), G275 (= G283), D276 (= D284), P292 (= P300), L293 (= L301), A294 (= A302), Y418 (= Y427), A419 (≠ S428)
Sites not aligning to the query:
O52582 Coenzyme A disulfide reductase; CoA-disulfide reductase; CoADR; EC 1.8.1.14 from Staphylococcus aureus (strain NCTC 8325 / PS 47) (see 3 papers)
31% identity, 77% coverage: 16:445/559 of query aligns to 15:437/438 of O52582
- T15 (= T16) binding substrate
- Q19 (≠ K20) binding substrate
- R22 (= R23) binding substrate
- S39 (= S40) binding substrate
- N42 (= N43) binding substrate
- C43 (= C44) active site, Nucleophile; active site, Redox-active; mutation to S: Loss of activity.
- K71 (≠ Y72) binding substrate
- 267:277 (vs. 274:284, 64% identical) binding FAD
- H299 (≠ N306) binding substrate
- Y361 (= Y369) mutation to F: Reduces activity by 92%. Loss of activity; when associated with F-419.
- Y419 (= Y427) binding FAD; mutation to F: Reduces activity by 80%. Loss of activity; when associated with F-361.
- K427 (= K435) binding substrate
Sites not aligning to the query:
- 1 modified: Initiator methionine, Removed
- 8:33 binding FAD
5er0A Water-forming nadh oxidase from lactobacillus brevis (lbnox) (see paper)
27% identity, 78% coverage: 4:440/559 of query aligns to 3:436/450 of 5er0A
- active site: H11 (≠ A12), I38 (≠ V39), L41 (≠ A42), S42 (≠ N43), C43 (= C44), Q75 (≠ F77), T102 (≠ F104), A277 (= A281), A282 (≠ V286), A283 (≠ E287), V302 (≠ N306)
- binding flavin-adenine dinucleotide: G8 (= G9), T10 (≠ V11), H11 (≠ A12), A12 (= A13), E33 (= E34), R34 (≠ K35), S42 (≠ N43), C43 (= C44), N79 (≠ E81), V80 (≠ A82), S112 (≠ N113), G113 (= G114), K133 (≠ E137), Y158 (= Y161), I159 (= I162), N246 (≠ D249), G279 (= G283), D280 (= D284), P296 (= P300), L297 (= L301), A298 (= A302)
Sites not aligning to the query:
5vn0A Water-forming nadh oxidase from lactobacillus brevis (lbnox) bound to nadh. (see paper)
27% identity, 78% coverage: 4:440/559 of query aligns to 3:436/449 of 5vn0A
- active site: H11 (≠ A12), I38 (≠ V39), L41 (≠ A42), S42 (≠ N43), C43 (= C44), Q75 (≠ F77), T102 (≠ F104), A277 (= A281), A282 (≠ V286), A283 (≠ E287), V302 (≠ N306)
- binding flavin-adenine dinucleotide: G8 (= G9), T10 (≠ V11), H11 (≠ A12), A12 (= A13), E33 (= E34), R34 (≠ K35), N35 (= N36), S42 (≠ N43), C43 (= C44), N79 (≠ E81), V80 (≠ A82), T111 (≠ C112), S112 (≠ N113), G113 (= G114), K133 (≠ E137), G279 (= G283), D280 (= D284), L297 (= L301), A298 (= A302)
- binding 1,4-dihydronicotinamide adenine dinucleotide: G157 (= G160), Y158 (= Y161), I159 (= I162), E162 (= E165), D178 (≠ E181), A179 (= A182), K186 (≠ T189), Y187 (vs. gap), I241 (≠ T244), G242 (= G245), F243 (≠ V246), P296 (= P300), L297 (= L301)
Sites not aligning to the query:
Query Sequence
>WP_013450727.1 NCBI__GCF_000183405.1:WP_013450727.1
MGKRILVIGGVAAGATAAAKARRTDETAEITILEKNGYVSFANCGIPYYIGNVIKSRNSL
LLQNAKSLKKRYNIDVFTHTEAIRIDPDKKIVFAKNNSDENLTFQYDKLILCNGAKTIIP
PIDGISEIDYFTVRSIEDMDSIKDFIEEHKPESACVIGAGYIGIETSEALMHCGLEVTVV
EALPHILPTFSPEVSLKIYEKMVSCGITLKTETKIVKAYKQDNKIILLSEKGESFTTDLL
IIATGVKPDIELAKTAGLEIGSVGGVRVNSRMETSVADIYAAGDLVEKKDIITGNYILAP
LAGPANREGRVAGCNAAGGNLEYKGTLRTAIVSFENACCAQTGLSYKEAIKFGYDAHFTY
TEDPNHVEYYPDPKYIFIKLIFDKKTGKILGAEASGENGVERRIDIISTAIFAGLTVYEL
GEIDFCYSPPYGAAKDPVNISGLVATNFINSSNLITPQQFLEIYSNELQILDVRTRIEFK
SYRVKNAINIYINDLRESLEELNKNKPVYIYCAVGYRGYVATKLLRNYGFDAYNISGGIE
AIKRVAKIKNMEVIDAGNS
Or try a new SitesBLAST search
SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory