Comparing WP_013450893.1 NCBI__GCF_000183405.1:WP_013450893.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 3 hits to proteins with known functional sites (download)
P07117 Sodium/proline symporter; Proline carrier; Proline permease; Propionate transporter from Escherichia coli (strain K12) (see 4 papers)
25% identity, 83% coverage: 19:454/526 of query aligns to 5:443/502 of P07117
B4EZY7 Sodium/sialic acid symporter SiaT; Na(+)-coupled sialic acid symporter; Sialic acid transporter from Proteus mirabilis (strain HI4320) (see paper)
22% identity, 48% coverage: 29:283/526 of query aligns to 20:275/496 of B4EZY7
Sites not aligning to the query:
5nv9A Substrate-bound outward-open state of a na+-coupled sialic acid symporter reveals a novel na+-site (see paper)
22% identity, 48% coverage: 29:283/526 of query aligns to 16:271/480 of 5nv9A
Sites not aligning to the query:
>WP_013450893.1 NCBI__GCF_000183405.1:WP_013450893.1
MDNATTAVQQFSFGKPNPSSILFFFIVVAITLLATYFAAKKSQKTASSYYTAGGGISGFQ
NGLALAGDYMSAASFLGISGMVALKGYDGVIYAVGWLVGWPALLFLIAEPLRNLGKYSFA
DVVAFRLNAKPIRTAAAIGGLLVLLSYTTAQMVGSGSLIKLLFGMSYEMAVVIVGVAMLI
YLLLGGMLATTWVQIIKATLLLGGVTLITILVLAKFGFNPGELYGAVAAKYGDKALEPGG
FIKSAADAFSLGLALMLGLLGLPHILMRFFTVPNAKEARKSIVWATTWIGYFYIIIPIVG
YGAAVLVSRETITSIDKGGNMAAVMLAEVLGGSALMGFISAVAFATILAVVAGLTIAASA
ALANDLWIGVLKGGQATEAEKYKSAKVATFIYGIVAIFLGIAFKGQNVAFLVALAFAVAA
SANFPALFLSIVWKKFSTTGAVLSILVGGLSAMVLIVLGPTVWVDVLKNTAPIFPYKFPT
IFSLPLAFIAGWIGSLIAPDPKAQELFEDEKLRTYLGVGAEGAHDH
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory