Comparing WP_013451550.1 NCBI__GCF_000183405.1:WP_013451550.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 20 (the maximum) hits to proteins with known functional sites (download)
6mbnA Lptb e163q in complex with atp (see paper)
61% identity, 98% coverage: 5:239/239 of query aligns to 6:241/241 of 6mbnA
6s8nB Cryo-em structure of lptb2fgc in complex with lipopolysaccharide (see paper)
62% identity, 97% coverage: 5:237/239 of query aligns to 5:238/238 of 6s8nB
6s8gA Cryo-em structure of lptb2fgc in complex with amp-pnp (see paper)
62% identity, 97% coverage: 5:237/239 of query aligns to 5:238/238 of 6s8gA
6mjpA Lptb(e163q)fgc from vibrio cholerae (see paper)
55% identity, 99% coverage: 3:239/239 of query aligns to 3:240/240 of 6mjpA
6mhzA Vanadate trapped cryo-em structure of e.Coli lptb2fg transporter (see paper)
61% identity, 96% coverage: 5:234/239 of query aligns to 5:235/235 of 6mhzA
6b89A E. Coli lptb in complex with adp and novobiocin (see paper)
61% identity, 96% coverage: 5:233/239 of query aligns to 5:234/234 of 6b89A
4p31A Crystal structure of a selenomethionine derivative of e. Coli lptb in complex with adp-magensium (see paper)
61% identity, 96% coverage: 5:233/239 of query aligns to 5:234/234 of 4p31A
6b8bA E. Coli lptb in complex with adp and a novobiocin derivative (see paper)
61% identity, 95% coverage: 5:232/239 of query aligns to 5:233/233 of 6b8bA
1ji0A Crystal structure analysis of the abc transporter from thermotoga maritima
33% identity, 97% coverage: 3:234/239 of query aligns to 7:238/240 of 1ji0A
7d0aB Acinetobacter mlafedb complex in adp-vanadate trapped vclose conformation (see paper)
32% identity, 91% coverage: 3:220/239 of query aligns to 5:226/263 of 7d0aB
7d08B Acinetobacter mlafedb complex in atp-bound vtrans1 conformation (see paper)
32% identity, 91% coverage: 3:220/239 of query aligns to 5:226/263 of 7d08B
6z5uK Cryo-em structure of the a. Baumannii mlabdef complex bound to appnhp (see paper)
32% identity, 91% coverage: 3:220/239 of query aligns to 3:224/253 of 6z5uK
1oxvD Crystal structure of glcv, the abc-atpase of the glucose abc transporter from sulfolobus solfataricus (see paper)
32% identity, 95% coverage: 3:230/239 of query aligns to 4:236/353 of 1oxvD
1oxvA Crystal structure of glcv, the abc-atpase of the glucose abc transporter from sulfolobus solfataricus (see paper)
32% identity, 95% coverage: 3:230/239 of query aligns to 4:236/353 of 1oxvA
1oxuA Crystal structure of glcv, the abc-atpase of the glucose abc transporter from sulfolobus solfataricus (see paper)
32% identity, 95% coverage: 3:230/239 of query aligns to 4:236/353 of 1oxuA
Q97UY8 Glucose import ATP-binding protein GlcV; EC 7.5.2.- from Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) (Sulfolobus solfataricus) (see paper)
32% identity, 95% coverage: 3:230/239 of query aligns to 4:236/353 of Q97UY8
1g291 Malk (see paper)
31% identity, 94% coverage: 2:226/239 of query aligns to 3:231/372 of 1g291
Sites not aligning to the query:
4yerA Crystal structure of an abc transporter atp-binding protein (tm_1403) from thermotoga maritima msb8 at 2.35 a resolution
34% identity, 91% coverage: 3:219/239 of query aligns to 5:220/285 of 4yerA
3d31A Modbc from methanosarcina acetivorans (see paper)
36% identity, 94% coverage: 3:226/239 of query aligns to 2:219/348 of 3d31A
Sites not aligning to the query:
1g6hA Crystal structure of the adp conformation of mj1267, an atp-binding cassette of an abc transporter (see paper)
32% identity, 97% coverage: 3:235/239 of query aligns to 5:254/254 of 1g6hA
>WP_013451550.1 NCBI__GCF_000183405.1:WP_013451550.1
MGIRTKNLKKIYKKRTVVNNVSIEVKEGEVVGLLGPNGAGKTTTFYMVVGIVNPDGGNIY
FDDEDITELPIYIRAKKGISYLPQESSIFRKMTVYDNIYASLEINFRDKSYIRDRVEELI
SDFNLTKVKDSMGFSLSGGERRRVEIARCLATNPKIILLDEPFAGIDPISVVDIQKMIHK
LKNMGIGVLITDHNVRETLKITERAYILTDGEVLAEGEPELIVENPEVIRRYLGEDFSL
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory