Comparing WP_013451767.1 NCBI__GCF_000183405.1:WP_013451767.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
O67049 Shikimate dehydrogenase (NADP(+)); SD; SDH; EC 1.1.1.25 from Aquifex aeolicus (strain VF5) (see paper)
38% identity, 97% coverage: 5:258/263 of query aligns to 9:261/269 of O67049
2hk9B Crystal structure of shikimate dehydrogenase from aquifex aeolicus in complex with shikimate and NADP+ at 2.2 angstrom resolution (see paper)
38% identity, 97% coverage: 5:258/263 of query aligns to 9:261/267 of 2hk9B
2hk9A Crystal structure of shikimate dehydrogenase from aquifex aeolicus in complex with shikimate and NADP+ at 2.2 angstrom resolution (see paper)
38% identity, 97% coverage: 5:258/263 of query aligns to 9:261/269 of 2hk9A
Q5HNV1 Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Staphylococcus epidermidis (strain ATCC 35984 / RP62A) (see paper)
34% identity, 95% coverage: 5:254/263 of query aligns to 3:254/269 of Q5HNV1
3dooA Crystal structure of shikimate dehydrogenase from staphylococcus epidermidis complexed with shikimate (see paper)
33% identity, 95% coverage: 5:254/263 of query aligns to 3:245/258 of 3dooA
Q9KVT3 Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
34% identity, 94% coverage: 4:250/263 of query aligns to 7:259/278 of Q9KVT3
3pgjA 2.49 angstrom resolution crystal structure of shikimate 5- dehydrogenase (aroe) from vibrio cholerae o1 biovar eltor str. N16961 in complex with shikimate
34% identity, 94% coverage: 4:250/263 of query aligns to 3:255/272 of 3pgjA
Q58484 Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii) (see paper)
39% identity, 96% coverage: 3:254/263 of query aligns to 7:269/282 of Q58484
1nvtB Crystal structure of shikimate dehydrogenase (aroe or mj1084) in complex with NADP+ (see paper)
39% identity, 98% coverage: 3:261/263 of query aligns to 12:278/287 of 1nvtB
1nvtA Crystal structure of shikimate dehydrogenase (aroe or mj1084) in complex with NADP+ (see paper)
39% identity, 98% coverage: 3:261/263 of query aligns to 12:278/287 of 1nvtA
3sefC 2.4 angstrom resolution crystal structure of shikimate 5-dehydrogenase (aroe) from vibrio cholerae o1 biovar eltor str. N16961 in complex with shikimate and NADPH
33% identity, 94% coverage: 4:250/263 of query aligns to 3:228/244 of 3sefC
3sefA 2.4 angstrom resolution crystal structure of shikimate 5-dehydrogenase (aroe) from vibrio cholerae o1 biovar eltor str. N16961 in complex with shikimate and NADPH
34% identity, 94% coverage: 4:250/263 of query aligns to 3:251/268 of 3sefA
1nytA Shikimate dehydrogenase aroe complexed with NADP+ (see paper)
34% identity, 99% coverage: 3:263/263 of query aligns to 2:266/271 of 1nytA
P15770 Shikimate dehydrogenase (NADP(+)); SD; SDH; EC 1.1.1.25 from Escherichia coli (strain K12) (see paper)
34% identity, 99% coverage: 3:263/263 of query aligns to 2:266/272 of P15770
2cy0A Crystal structure of shikimate 5-dehydrogenase (aroe) from thermus thermophilus hb8 in complex with NADP (see paper)
32% identity, 94% coverage: 4:250/263 of query aligns to 3:246/262 of 2cy0A
2ev9B Crystal structure of shikimate 5-dehydrogenase (aroe) from thermus thermophilus hb8 in complex with NADP(h) and shikimate (see paper)
32% identity, 94% coverage: 4:250/263 of query aligns to 3:246/263 of 2ev9B
Q5SJF8 Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8) (see paper)
32% identity, 94% coverage: 4:250/263 of query aligns to 3:246/263 of Q5SJF8
3tozA 2.2 angstrom crystal structure of shikimate 5-dehydrogenase from listeria monocytogenes in complex with NAD.
30% identity, 96% coverage: 5:256/263 of query aligns to 16:285/291 of 3tozA
Q8Y9N5 Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
30% identity, 96% coverage: 5:256/263 of query aligns to 16:285/291 of Q8Y9N5
3tnlA 1.45 angstrom crystal structure of shikimate 5-dehydrogenase from listeria monocytogenes in complex with shikimate and NAD.
30% identity, 96% coverage: 5:256/263 of query aligns to 13:282/288 of 3tnlA
>WP_013451767.1 NCBI__GCF_000183405.1:WP_013451767.1
MYKNFGLIGKPISHSISPKIHNIFLYTNRLNGGYCCFELEDSQLPDVIDLFKKMHFTGFN
VTLPYKERIIDFLDGLESDAEKIGAVNTVKIENGKLIGYNTDIFGIRETFKFYNVDLSKK
VIVVLGAGGAARGLLYELRNHDYEELIIVNRTVEKGFLIAEEFEIKKYSVKDLNSFDYSK
KYDIIINSSSAGLSGGAVFGDLKADVAFDMQYDLEKKTIFLEKVDCKRGFDGLVMLVGQA
YKAFCIWNGFDFSINYDEVIKML
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory