Comparing WP_013460008.1 NCBI__GCF_000183725.1:WP_013460008.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
P07821 Iron(3+)-hydroxamate import ATP-binding protein FhuC; Ferric hydroxamate uptake protein C; Ferrichrome transport ATP-binding protein FhuC; Iron(III)-hydroxamate import ATP-binding protein FhuC; EC 7.2.2.16 from Escherichia coli (strain K12) (see 2 papers)
31% identity, 92% coverage: 7:248/263 of query aligns to 12:254/265 of P07821
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
36% identity, 86% coverage: 5:231/263 of query aligns to 1:225/241 of 4u00A
P69874 Spermidine/putrescine import ATP-binding protein PotA; EC 7.6.2.11 from Escherichia coli (strain K12) (see 3 papers)
31% identity, 86% coverage: 3:229/263 of query aligns to 14:235/378 of P69874
Sites not aligning to the query:
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
30% identity, 85% coverage: 6:229/263 of query aligns to 1:223/240 of 4ymuJ
1jj7A Crystal structure of thE C-terminal atpase domain of human tap1 (see paper)
35% identity, 72% coverage: 1:190/263 of query aligns to 6:199/251 of 1jj7A
3c4jA Abc protein artp in complex with atp-gamma-s
32% identity, 86% coverage: 6:230/263 of query aligns to 3:226/242 of 3c4jA
3c41J Abc protein artp in complex with amp-pnp/mg2+
32% identity, 86% coverage: 6:230/263 of query aligns to 3:226/242 of 3c41J
2olkA Abc protein artp in complex with adp-beta-s
32% identity, 86% coverage: 6:230/263 of query aligns to 3:226/242 of 2olkA
2oljA Abc protein artp in complex with adp/mg2+
32% identity, 86% coverage: 6:230/263 of query aligns to 3:226/242 of 2oljA
Q03518 Antigen peptide transporter 1; APT1; ATP-binding cassette sub-family B member 2; Peptide supply factor 1; Peptide transporter PSF1; PSF-1; Peptide transporter TAP1; Peptide transporter involved in antigen processing 1; Really interesting new gene 4 protein; RING4; EC 7.4.2.14 from Homo sapiens (Human) (see 10 papers)
35% identity, 73% coverage: 1:191/263 of query aligns to 497:691/748 of Q03518
Sites not aligning to the query:
8t4jA Transporter associated with antigen processing (tap) bound to the 14- mer peptide lpavvglspgeqey
35% identity, 70% coverage: 1:185/263 of query aligns to 308:496/552 of 8t4jA
Sites not aligning to the query:
Q00748 Multidrug resistance protein homolog 65; P-glycoprotein 65; EC 7.6.2.2 from Drosophila melanogaster (Fruit fly) (see paper)
28% identity, 97% coverage: 7:260/263 of query aligns to 405:669/1302 of Q00748
Sites not aligning to the query:
5x40A Structure of a cbio dimer bound with amppcp (see paper)
29% identity, 87% coverage: 3:231/263 of query aligns to 1:229/280 of 5x40A
8wm7D Cryo-em structure of cyanobacterial nitrate/nitrite transporter nrtbcd in complex with signalling protein pii (see paper)
34% identity, 77% coverage: 16:218/263 of query aligns to 14:214/257 of 8wm7D
8hplC Lpqy-sugabc in state 1 (see paper)
29% identity, 85% coverage: 7:229/263 of query aligns to 3:219/384 of 8hplC
8hprD Lpqy-sugabc in state 4 (see paper)
29% identity, 85% coverage: 7:229/263 of query aligns to 3:221/362 of 8hprD
8hprC Lpqy-sugabc in state 4 (see paper)
29% identity, 85% coverage: 7:229/263 of query aligns to 3:221/363 of 8hprC
1vciA Crystal structure of the atp-binding cassette of multisugar transporter from pyrococcus horikoshii ot3 complexed with atp (see paper)
31% identity, 78% coverage: 25:229/263 of query aligns to 25:216/353 of 1vciA
Sites not aligning to the query:
4yerA Crystal structure of an abc transporter atp-binding protein (tm_1403) from thermotoga maritima msb8 at 2.35 a resolution
30% identity, 86% coverage: 3:229/263 of query aligns to 1:223/285 of 4yerA
8w9mD Cryo-em structure of the cyanobacterial nitrate transporter nrtbcd in complex with atp (see paper)
33% identity, 77% coverage: 16:218/263 of query aligns to 12:212/256 of 8w9mD
>WP_013460008.1 NCBI__GCF_000183725.1:WP_013460008.1
MELTPIITVNDLHFSYPTRPVLEGVDFTLRRGEVVSLLGPNGCGKSTLIRLILKLIRAKR
GEIWLHEKSLHRYSHREIASHIAYIPQYHNVPFNYSVLEMVIMGRVSKLGFFAAPSAGDH
TIARESLERVGISDLANRPFGQLSGGQKQMVLLARALTQGVDTFIMDEPVSGLDYGNQIR
LLELIVRLSEQGYTFLKTTHYPDHALLVSTRVAVMNGGKIIADGSPDDVITPSMIRDVYG
IEADLITHDTHTRCLPIFNKGIS
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory