SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_013518247.1 NCBI__GCF_000204645.1:WP_013518247.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

S5FMM4 Glycine oxidase; GO; BliGO; EC 1.4.3.19 from Bacillus licheniformis (see paper)
26% identity, 47% coverage: 188:392/432 of query aligns to 148:349/369 of S5FMM4

query
sites
S5FMM4
V
 
V
Q
 
E
P
 
P
L
 
A
A
 
A
Y
 
V
A
 
C
R
 
R
G
 
A
L
 
F
A
 
A
R
 
R
A
 
G
A
 
A
Q
 
R
G
 
M
L
 
L
G
 
G
V
 
A
Q
 
D
V
 
V
H
 
F
G
 
E
G
 
Y
S
 
T
P
 
P
V
 
V
V
 
L
A
 
S
L
 
I
E
 
E
R
 
S
Q
 
E
G
 
A
M
 
G
H
 
A
W
 
V
I
 
R
A
 
V
T
 
T
T
 
S
A
 
A
Q
 
S
G
 
G
H
 
-
R
 
T
V
 
A
Q
 
E
A
 
A
Q
 
E
Q
 
H
V
 
A
V
 
V
L
 
I
G
 
A
T
x
S
N
 
-
G
 
-
Y
 
-
T
 
-
D
 
-
G
 
G
L
 
V
W
 
W
P
 
S
G
 
G
-
 
A
-
 
L
L
 
F
A
 
K
R
 
Q
T
 
I
V
 
G
L
 
L
A
 
D
A
 
K
N
 
R
S
 
F
F
 
Y
I
 
P
V
 
V
A
 
K
T
 
G
R
 
E
P
 
C
L
 
L
G
 
S
P
 
V
A
 
W
G
 
N
D
 
D
G
 
G
I
 
I
L
 
-
P
 
-
G
 
-
G
 
-
E
 
-
T
 
-
G
 
-
S
 
S
T
 
L
S
 
T
Q
 
R
R
 
T
L
 
L
L
 
Y
-
 
H
-
 
D
-
 
H
L
 
C
Y
 
Y
F
 
I
R
 
V
K
 
P
D
 
R
A
 
H
Q
 
S
G
 
G
R
 
R
L
 
L
L
 
V
M
 
V
G
 
G
G
 
A
R
 
T
G
 
M
H
 
K
F
 
P
A
 
G
D
 
D
-
 
W
P
 
N
Q
 
E
G
 
Q
P
 
P
Q
 
E
-
 
L
-
 
G
D
 
G
F
 
I
S
 
E
H
 
E
L
 
L
E
 
I
R
 
R
A
 
K
V
 
A
A
 
K
L
 
S
M
 
M
F
 
L
P
 
P
Q
 
G
L
 
I
G
 
E
P
 
S
L
 
M
Q
 
K
Y
 
I
E
 
D
Y
 
Q
R
 
C
W
 
W
A
 
A
G
 
G
R
 
L
I
 
R
A
 
P
V
 
E
T
 
T
R
 
G
D
 
D
F
 
G
M
 
N
P
 
P
H
 
Y
L
 
I
-
 
G
-
 
R
H
 
H
R
 
P
P
 
E
A
 
N
P
 
D
G
 
R
I
 
I
T
 
L
M
 
F
A
 
A
L
 
A
G
 
G
Y
 
H
N
 
F
G
 
R
R
 
N
G
 
G
I
|
I
A
 
L
M
 
L
A
 
A
T
 
P
S
 
A
L
 
T
G
 
G
R
 
E
H
 
M
A
x
M
A
 
A
A
 
D
L
 
M
V
 
I
A
 
L
G
 
G
S
 
N

Sites not aligning to the query:

Query Sequence

>WP_013518247.1 NCBI__GCF_000204645.1:WP_013518247.1
MNTRSIASHPAAPSLWAATAPAAPDTPALGASVSTDVLVVGAGYTGLSTALHLAESGARV
CVLDAHAPGWGASGRNGGQVNPTLKYDPDDLVRIYGAERAEPLIDTVSRSADLVYGLIAR
HAIDCAPVRAGWLQVGYTQHAVDGMHARARQWERRGVRVEMLDRAAVAARIGTPAFAGGW
LDGRAGGVQPLAYARGLARAAQGLGVQVHGGSPVVALERQGMHWIATTAQGHRVQAQQVV
LGTNGYTDGLWPGLARTVLAANSFIVATRPLGPAGDGILPGGETGSTSQRLLLYFRKDAQ
GRLLMGGRGHFADPQGPQDFSHLERAVALMFPQLGPLQYEYRWAGRIAVTRDFMPHLHRP
APGITMALGYNGRGIAMATSLGRHAAALVAGSSAAACPFPVTPVQPIPLHGLQRFYIAAG
VAWYSLLDRLGA

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory