Comparing WP_013518722.1 NCBI__GCF_000204645.1:WP_013518722.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 17 hits to proteins with known functional sites (download)
5c65A Structure of the human glucose transporter glut3 / slc2a3
32% identity, 39% coverage: 66:237/446 of query aligns to 49:205/457 of 5c65A
Sites not aligning to the query:
4zw9A Crystal structure of human glut3 bound to d-glucose in the outward- occluded conformation at 1.5 angstrom (see paper)
32% identity, 39% coverage: 66:237/446 of query aligns to 53:209/470 of 4zw9A
Sites not aligning to the query:
7sptA Crystal structure of exofacial state human glucose transporter glut3 (see paper)
32% identity, 39% coverage: 66:237/446 of query aligns to 53:209/470 of 7sptA
Sites not aligning to the query:
7crzA Crystal structure of human glucose transporter glut3 bound with c3361 (see paper)
32% identity, 39% coverage: 66:237/446 of query aligns to 51:207/469 of 7crzA
Sites not aligning to the query:
7spsA Crystal structure of human glucose transporter glut3 bound with exofacial inhibitor sa47 (see paper)
32% identity, 39% coverage: 66:237/446 of query aligns to 50:206/468 of 7spsA
Sites not aligning to the query:
P11169 Solute carrier family 2, facilitated glucose transporter member 3; Glucose transporter type 3, brain; GLUT-3 from Homo sapiens (Human) (see paper)
32% identity, 39% coverage: 66:237/446 of query aligns to 53:209/496 of P11169
Sites not aligning to the query:
Q9Y7Q9 Probable metabolite transporter C2H8.02 from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (see paper)
31% identity, 35% coverage: 90:246/446 of query aligns to 98:260/583 of Q9Y7Q9
Sites not aligning to the query:
Q8NLB7 Gentisate transporter from Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / BCRC 11384 / CCUG 27702 / LMG 3730 / NBRC 12168 / NCIMB 10025 / NRRL B-2784 / 534) (see paper)
27% identity, 55% coverage: 13:256/446 of query aligns to 12:239/444 of Q8NLB7
Sites not aligning to the query:
A0A0H2VG78 Glucose transporter GlcP; Glucose/H(+) symporter from Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200) (see paper)
34% identity, 31% coverage: 96:233/446 of query aligns to 63:184/446 of A0A0H2VG78
Sites not aligning to the query:
8fvzA Pipt y150a
24% identity, 93% coverage: 32:446/446 of query aligns to 2:429/433 of 8fvzA
8uo9A Structure of synaptic vesicle protein 2a in complex with a nanobody (see paper)
28% identity, 20% coverage: 90:176/446 of query aligns to 65:143/555 of 8uo9A
Sites not aligning to the query:
8k77A Synaptic vesicle glycoprotein 2A (see paper)
28% identity, 20% coverage: 90:176/446 of query aligns to 81:159/592 of 8k77A
Sites not aligning to the query:
8jlhA Cryo-em structure of sv2a dimer in complex with bont/a2 hc and levetiracetam (see paper)
28% identity, 20% coverage: 90:176/446 of query aligns to 81:159/592 of 8jlhA
Sites not aligning to the query:
8jlcA Synaptic vesicle glycoprotein 2A (see paper)
28% identity, 20% coverage: 90:176/446 of query aligns to 81:159/592 of 8jlcA
Sites not aligning to the query:
P32037 Solute carrier family 2, facilitated glucose transporter member 3; Glucose transporter type 3, brain; GLUT-3 from Mus musculus (Mouse) (see paper)
30% identity, 36% coverage: 76:237/446 of query aligns to 65:209/493 of P32037
Sites not aligning to the query:
Q02563 Synaptic vesicle glycoprotein 2A; Synaptic vesicle protein 2; Synaptic vesicle protein 2A from Rattus norvegicus (Rat) (see 2 papers)
28% identity, 20% coverage: 90:176/446 of query aligns to 217:295/742 of Q02563
Sites not aligning to the query:
8sc2A Human oct1 bound to diltiazem in inward-open conformation (see paper)
30% identity, 38% coverage: 79:246/446 of query aligns to 135:280/453 of 8sc2A
Sites not aligning to the query:
>WP_013518722.1 NCBI__GCF_000204645.1:WP_013518722.1
MGIQNSSMGDVALSPTSQGASNISTAATSKVQPRVVAATVAGNALEFFDFTTYAFFAVYI
GQTFFPADEPLVTVMLSVAVFGVGFITRPLGGLLIGAFADRAGRKPAMLLTIALITVGTI
GMALTPSYASIGLAAPIIVIACRLVQGLALGGEVGPSTTYLIEIAPQGRRGLYGSWQLAS
QGIASLAAGIVGIVLTLALSKEQMLAWGWRIPFLLGLALIPIAVFLRRHMPESLEQPTHS
GPIKSPLADIRHHLRPIMLALMVILGVTISTYAAIYMTTYAVTTLKLSATIAMSATIVFG
VATWAGALLGGWLSDLYGRKPVMLWARVALFVLVYPAYMLLIEHTSVATLALATALLALL
TGIGGAPTLVAIPELFPGHVRALGLSIAYAFGVALFGGTAQLVITWLIKVTDNPAAPALY
VLITSLIAIVGILLMRETGGDKELQK
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory