SitesBLAST

SitesBLAST – Find functional sites

SitesBLAST

Comparing WP_013518775.1 NCBI__GCF_000204645.1:WP_013518775.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 16 hits to proteins with known functional sites (download)

Q47945 Alcohol dehydrogenase (quinone), cytochrome c subunit; ADH; Alcohol dehydrogenase (quinone), subunit II; Cytochrome c-553; Cytochrome c553; Ethanol:Q2 reductase; G3-ADH subunit II; Quinohemoprotein-cytochrome c complex; Ubiquinol oxidase; EC 1.1.5.5 from Gluconobacter oxydans (strain 621H) (Gluconobacter suboxydans) (see paper)
36% identity, 98% coverage: 3:424/429 of query aligns to 11:434/478 of Q47945

query
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Q47945

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Q37 (≠ N29) modified: Pyrrolidone carboxylic acid

Sites not aligning to the query:

1:36 signal peptide

8gy2B Cryo-em structure of membrane-bound alcohol dehydrogenase from gluconobacter oxydans
38% identity, 87% coverage: 50:424/429 of query aligns to 6:396/433 of 8gy2B

query
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8gy2B

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binding heme c: C18 (= C62), C21 (= C65), H22 (= H66), T46 (≠ S90), I48 (≠ L92), Y59 (≠ W103), L68 (= L112), R73 (≠ S117), V79 (≠ L123), Y80 (= Y124), M83 (≠ F127), F88 (≠ Y132), R126 (≠ Q169), H165 (= H207), C166 (= C208), C169 (= C211), H170 (= H212), I201 (≠ Y238), A202 (= A239), P203 (= P240), L205 (= L242), W216 (= W253), F224 (≠ L261), A234 (≠ T271), V235 (= V272), F236 (≠ S273), F236 (≠ S273), M239 (= M276), N301 (≠ Q330), C302 (= C331), C305 (= C334), H306 (= H335), M316 (≠ A345), F317 (= F346), P318 (= P347), L320 (= L349), P324 (≠ R353), G342 (= G371), S352 (≠ R381), V354 (≠ H383), M356 (= M385), F359 (= F388), M375 (≠ I404)
binding ubiquinone-10: C21 (= C65), L34 (≠ R78), P39 (= P83), P81 (= P125), L129 (= L172), W132 (= W175), E168 (≠ A210), R173 (= R215), I197 (≠ V234), D241 (≠ E278)

Sites not aligning to the query:

binding heme c: 428

7w2jC Cryo-em structure of membrane-bound fructose dehydrogenase from gluconobacter japonicus
37% identity, 87% coverage: 50:424/429 of query aligns to 1:386/418 of 7w2jC

query
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7w2jC

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A

F
|
F

-

G

-

P

-

D

-

S

-

L

T

V

Q

Q

S

P

L

L

R

T

D

D

E

E

E

Q

I

I

A

A

S

T

V

I

L

A

S

D

Y

Y

I

V

R

L

N

S

A

H

W

F

G

G

N

N

E

A

A

Q

A

A

K

T

V

V

D

S

T

A

I

D

D

A

V

V

Y

K

R

Q

A

V

R

R

binding heme c: C13 (= C62), C16 (= C65), H17 (= H66), T42 (≠ S90), I44 (≠ L92), Y55 (≠ W103), L75 (= L123), Y76 (= Y124), A78 (= A126), M79 (≠ F127), R122 (≠ Q169), H161 (= H207), C162 (= C208), C165 (= C211), H166 (= H212), A191 (= A239), P192 (= P240), R223 (≠ T271), P227 (= P275), M228 (= M276), V289 (≠ Q330), C290 (= C331), C293 (= C334), H294 (= H335), Y305 (≠ A345), Y306 (≠ F346), P307 (= P347), L309 (= L349), N312 (= N352), T313 (≠ R353), T314 (≠ A354), D322 (≠ N362), I327 (≠ V367), V331 (≠ L373), R333 (≠ A375), I340 (≠ P382), M342 (= M385), P343 (= P386), F345 (= F388)

8jejC Cryo-em structure of na-dithionite reduced membrane-bound fructose dehydrogenase from gluconobacter japonicus
36% identity, 87% coverage: 50:424/429 of query aligns to 1:400/413 of 8jejC

query
sites
8jejC

I

I

A

S

R

R

G

G

E

H

Y

Y

L

L

A

A

R

I

A

A

G

A

N

D

C
|
C

M

A

S

A

C
|
C

H
|
H

T

T

R

N

-

G

Q

R

G

D

G

G

P

Q

A

F

Y

L

A

A

G

G

R

Y

A

A

I

I

D

S

T

S

P

P

F
x
M

G

G

A

N

V

I

H

Y

A

S

S
x
T

N

N

L
x
I

T

T

P

P

D

S

D

K

A

T

T

H

G

G

I

I

G

G

L

N

W

Y

S

T

A

L

G

E

E

Q

F
|
F

W

S

R

K

A

A

L
|
L

H

R

N

H

G

G

R

I

S

R

R

A

D

D

G

G

R

A

L

Q

L
|
L

Y
|
Y

P
|
P

A

A

F
x
M

P
|
P

Y

Y

P

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S

A

Y
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Y

T

N

H

R

I

L

T

T

R

D

A

E

D

D

S

V

D

K

A

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I

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Y

Y

A

A

Y

Y

L

I

R

M

S

T

-

E

L

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K

P

P

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D

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A

P

P

N

S

R

P

P

K

H

T

A

Q

L

L

R

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F

F

P

P

F

F

N

S

T

I

Q
x
R

V

A

A
x
S

L

L

A

G

A

I

W
|
W

R

K

A

I

-

A

-

R

L

I

F

E

F

G

R

K

P

P

G

Y

V

V

L

F

L

-

E

-

Q

D

P

H

A

T

R

H

S

N

A

D

E

D

W

W

N

N

R

R

G

G

A

R

Y

Y

L

L

V

V

L

D

G

E

L

L

G

A

H

H

C
|
C

A

G

A

E

C
|
C

H
|
H

T

T

P

P

R

R

N

N

A

F

L

L

G
x
L

A

A

P

P

R

N

A

Q

D

S

A

A

A

Y

F

L

R

A

G

G

G

A

L

-

I

-

P

D

V
x
I

Q

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N

S

W
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W

Y

R

A
|
A

P
|
P

A

N

L
x
I

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H

P

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Q

A

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A

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I

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A

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W

P

S

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E

Q

E

D

A

L

V

F

A

Q

L
x
Y

L

L

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K

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T

G

G

V

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T

P

A

Q

H

A

A

T
x
R

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A

G

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M
|
M

A

A

E

E

V

A

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S

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L

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Q

Y

Y

L

L

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D

D

A

A

D

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I

R

S

A

A

I

I

V

V

L

T

Y

Y

L

L

R

R

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S

L

V

P

P

-

A

-

K

Q

A

E

E

D

S

G

G

P

Q

-

T

-

V

-

A

-

N

-

F

-

E

-

H

-

A

-

G

-

R

-

P

-

S

-

Y

-

S

-

V

A

A

P

N

P

A

T

N

A

S

R

R

P

R

S

S

G

N

A

S

V

T

M

L

E

T

K

K

G

T

R

T

D

D

-

G

-

A

I

L

Y

Y

R

E

Q

A

Q
x
V

C
|
C

V

A

Q

S

C
|
C

H
|
H

G

Q

E

S

Q

D

G

G

E

K

G

G

R

S

R

K

-

D

G

G

A

Y

F
x
Y

P
|
P

T

S

L
|
L

A

V

G

G

N

N

R
x
T

A
x
T

V

T

L

G

L

Q

A

L

D

N

T

P

T

N

N
x
D

L

L

V

I

Q

A

V

S

V
x
I

L

L

R

Y

G

G

G

-

Y

-

L
x
V

P

D

A
x
R

T

T

A

T

G

D

N

N

P

H

R

E

P
x
I

H

L

G

-

M
|
M

P

P

P

A

F
|
F

-

G

-

P

-

D

-

S

-

L

T

V

Q

Q

S

P

L

L

R

T

D

D

E

E

E

Q

I

I

A

A

S

T

V
x
I

L

A

S

D

Y

Y

I

V

R

L

N

S

A

H

W

F

G

G

N

N

E

A

A

Q

A

A

K

T

V

V

D

S

T

A

I

D

D

A

V

V

Y

K

R

Q

A

V

R

R

binding heme c: C13 (= C62), C16 (= C65), H17 (= H66), T42 (≠ S90), I44 (≠ L92), F60 (= F108), L64 (= L112), L75 (= L123), Y76 (= Y124), M79 (≠ F127), P80 (= P128), Y84 (= Y132), R122 (≠ Q169), C162 (= C208), C165 (= C211), H166 (= H212), I186 (≠ V234), W189 (= W237), A191 (= A239), P192 (= P240), I194 (≠ L242), W205 (= W253), Y213 (≠ L261), R223 (≠ T271), M228 (= M276), V303 (≠ Q330), C304 (= C331), C307 (= C334), H308 (= H335), Y320 (≠ F346), P321 (= P347), L323 (= L349), T327 (≠ R353), T328 (≠ A354), D336 (≠ N362), I341 (≠ V367), V345 (≠ L373), R347 (≠ A375), I354 (≠ P382), M356 (= M385), F359 (= F388), I376 (≠ V400)
binding ubiquinone-10: M36 (≠ F84), P77 (= P125), S124 (≠ A171), W128 (= W175), C165 (= C211), L173 (≠ G219)

Sites not aligning to the query:

binding ubiquinone-10: 408, 411

8gy3A Cryo-em structure of membrane-bound aldehyde dehydrogenase from gluconobacter oxydans
36% identity, 91% coverage: 16:405/429 of query aligns to 1:408/440 of 8gy3A

query
sites
8gy3A

V

I

L

A

A

A

V

A

A

V

V

I

G

G

-

L

G

G

G

A

V

V

V

G

A

G

L

I

N

G

R

F

L

L

D

A

E

Y

A

A

A

W

L

Y

P

P

A

A

D

I

D

-

A

A

P

P

L

I

P

P

-

R

-

P

-

A

-

S

A

F

T

S

S

A

E

D

A

A

I

I

A

S

R

R

G

G

E

E

Y

I

L

V

A

A

R

N

A

G

G

G

N
x
Y

C
|
C

M

A

S
x
E

C
|
C

H
|
H

T

T

R

R

-

V

-

D

-

G

Q

K

G

P

G

G

P

P

A

E

Y

L

A

A

G

G

G

D

R

F

A

K

I

M

D

A

T
|
T

P

P

F
|
F

G

G

A

D

V

I

H

F

A

S

S
|
S

N

N

L
x
I

T

T

P

P

D

D

D

E

A

E

T

W

G

G

I

I

G

G

L

N

W
|
W

S

S

A

L

G

A

E

A

F
|
F

W

K

R

R

A

A

L

M

H

N

N

K

G

G

R

I

S

A

R

R

D

D

G

G

R

S

L

Q

L
|
L

Y
|
Y

P
|
P

A

A

F
|
F

P

P

Y

F

P

D

S

H

Y
x
F

T

T

H

K

I

V

T

S

R

D

A

Q

D

D

S

V

D

S

A

D

I

L

Y

Y

A

A

Y

Y

L

L

R

M

S

T

L

R

P

P

P

A

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E

H

Q

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K

N

P

R

R

P

D

H

N

A

T

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x
I

N

N

T

I

Q
x
R

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L

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x
G

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x
Q

A

G

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x
F

W
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W

R

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A

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L

L

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Y

L

Q

E

N

Q

D

P

P

A

K

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H

S

D

A

A

E

Q

W

W

N

N

R

R

G

G

A

A

Y

Y

L

L

V

A

L

E

G

G

L

N

G

E

H
|
H

C
|
C

A

G

A

A

C
|
C

H
|
H

T

T

P

P

R
|
R

N

N

A

L

L
|
L

G

G

A

A

P

E

R

K

A

M

D

S

A

S

A

V

F

Y

R

D

G

G

G

A

L

V

I

I

P

-

V

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Q

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A

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P

A

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L
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L

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N

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P

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H

H

E

N

A

P

A

T

V

P

G

V

A

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W
|
W

P

T

V

E

E

D

E

E

A

L

V

F

A

Q

L
x
Y

L
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L

K

R

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F

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G

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V

S

A

P

P

-

L

Q

H

A
x
G

T
x
S

V

A

S

A

G

G

P

P

M
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M

A

S

E

P

V

V

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P

F

H

R

R

S

F

L

L

Q

S

Y

K

L

I

D

P

D

E

A

E

D

D

L

V

R

H

A

A

I

I

V

A

L

H

Y

Y

L
x
Y

R

A

S

D

L

V

P

D

Q

K

E

A

D

-

G

-

P

-

A

-

P

-

T

A

A

Q

R

R

P

S

S

S

G

G

-

D

-

Q

-

A

-

I

-

T

-

R

A

A

V

M

M

Q

E

M

K

S

G

G

R

R

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D

-

L

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T

-

G

-

P

-

Q

-

P

-

L

-

D

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E

-

D

-

A

-

R

I

L

Y

Y

R

Q

Q

G

Q

A

C
|
C

V

G

Q

A

C
|
C

H
|
H

G

Y

E

N

Q

S

G

G

E

P

G

N

R

P

R

V

G

L

A

G

F

R

P
|
P

T

E

L
|
L

A

A

G

L

N
|
N

R
x
N

A

A

V

L

L

W

L

L

A

D

D

E

T

P

T

N

N

N

L

L

V

Y

Q

Q

V
|
V

V

M

L

L

R

H

G

G

G

-

Y

-

L

-

P

-

A
x
I

T

T

A

A

G

E

N

E

P
x
G

R
x
Q

P

D

H

H

-
x
I

G

S

M
|
M

P

P

P

S

F
|
F

T

Y

Q

S

S

G

L

L

R

S

D

D

E

H

E

D

I

M

A

A

S

R

V

I

L

A

S

A

Y

Y

I

L

R

R

binding heme c: Y52 (≠ N61), C53 (= C62), C56 (= C65), H57 (= H66), S84 (= S90), I86 (≠ L92), W97 (= W103), F102 (= F108), L117 (= L123), F121 (= F127), F126 (≠ Y132), R163 (≠ Q169), C203 (= C208), C206 (= C211), H207 (= H212), A232 (= A239), P233 (= P240), L235 (= L242), W245 (= W253), Y253 (≠ L261), L254 (= L262), G263 (≠ A270), S264 (≠ T271), M269 (= M276), Y292 (≠ L299), C337 (= C331), C340 (= C334), H341 (= H335), P353 (= P347), L355 (= L349), N358 (= N352), N359 (≠ R353), V372 (= V366), I377 (≠ A375), G382 (≠ P380), Q383 (≠ R381), I386 (vs. gap), M388 (= M385), F391 (= F388)
binding ubiquinone-10: E55 (≠ S64), T76 (= T82), F78 (= F84), Y118 (= Y124), P119 (= P125), I160 (≠ F166), G166 (≠ A171), Q167 (≠ L172), F169 (≠ A174), W170 (= W175), H202 (= H207), R210 (= R215), L213 (= L218)

4ax3D Structure of three-domain heme-cu nitrite reductase from ralstonia pickettii at 1.6 a resolution (see paper)
35% identity, 25% coverage: 320:426/429 of query aligns to 352:457/457 of 4ax3D

query
sites
4ax3D

M

V

E

Q

K

A

G

G

R

R

D

A

I

L

Y

F

R

A

Q

G

Q

T

C
|
C

V

S

Q

V

C
|
C

H
|
H

G

Q

E

G

Q

N

G

G

E

A

G

G

R

L

R

P

G

G

A

V

F

F

P
|
P

T
x
P

L
|
L

A

A

G

-

N

K

R
x
S

A

D

V
x
F

L

L

L

A

A

A

D

D

T

P

T

K

N

R

L

A

V

M

Q

N

V

I

V

V

L

L

R

H

G

G

-

L

-
x
N

G
|
G

Y

K

L

I

P

K

A

V

T

N

A

-

G

G

N

Q

P

E

R

Y

P

D

H
x
S

G

V

M
|
M

P

P

F
x
M

T

T

Q

Q

S

-

L

L

R

N

D

D

E

D

E

E

I

V

A

A

S

N

V

I

L

L

S

T

Y

Y

I

V

R

L

N

N

A

S

W

W

G

D

N

N

E

P

A

G

K

R

V

V

D

S

T

A

I

E

D

D

V

V

Y

K

R

K

A

V

R

R

E

A

R

Q

binding heme c: C363 (= C331), C366 (= C334), H367 (= H335), P379 (= P347), P380 (≠ T348), L381 (= L349), S384 (≠ R353), F386 (≠ V355), N403 (vs. gap), G404 (= G371), S415 (≠ H383), M417 (= M385), M420 (≠ F388)

Sites not aligning to the query:

active site: 93, 96, 98, 133, 134, 142, 147, 239, 261, 262, 288
binding copper (ii) ion: 93, 98, 133, 134, 142, 147

6fjaA Crystal structure of t2d three-domain heme-cu nitrite reductase from ralstonia pickettii
35% identity, 25% coverage: 320:426/429 of query aligns to 349:454/455 of 6fjaA

query
sites
6fjaA

M

V

E

Q

K

A

G

G

R

R

D

A

I

L

Y

F

R

A

Q

G

Q
x
T

C
|
C

V

S

Q

V

C
|
C

H
|
H

G

Q

E

G

Q

N

G

G

E

A

G

G

R

L

R

P

G

G

A

V

F

F

P
|
P

T
x
P

L
|
L

A

A

G

-

N

K

R

S

A

D

V
x
F

L

L

L

A

A

A

D

D

T

P

T

K

N

R

L

A

V

M

Q

N

V

I

V

V

L

L

R

H

G

G

-

L

-
x
N

G
|
G

Y

K

L

I

P

K

A

V

T

N

A

-

G

G

N

Q

P

E

R
x
Y

P

D

H
x
S

G

V

M
|
M

P

P

F
x
M

T

T

Q

Q

S

-

L

L

R

N

D

D

E

D

E

E

I

V

A

A

S

N

V

I

L

L

S

T

Y

Y

I

V

R

L

N

N

A

S

W

W

G

D

N

N

E

P

A

G

K

R

V

V

D

S

T

A

I

E

D

D

V

V

Y

K

R

K

A

V

R

R

E

A

R

Q

binding protoporphyrin ix containing fe: T359 (≠ Q330), C360 (= C331), C363 (= C334), H364 (= H335), P376 (= P347), P377 (≠ T348), L378 (= L349), F383 (≠ V355), N400 (vs. gap), G401 (= G371), Y410 (≠ R381), S412 (≠ H383), M414 (= M385), M417 (≠ F388)

Sites not aligning to the query:

active site: 90, 93, 95, 130, 131, 139, 144, 236, 258, 259, 285
binding copper (ii) ion: 90, 131, 139, 144

5oboA Crystal structure of nitrite bound d97n mutant of three-domain heme-cu nitrite reductase from ralstonia pickettii
35% identity, 25% coverage: 320:426/429 of query aligns to 350:455/456 of 5oboA

query
sites
5oboA

M

V

E

Q

K

A

G

G

R

R

D

A

I

L

Y

F

R

A

Q

G

Q
x
T

C
|
C

V

S

Q

V

C
|
C

H
|
H

G

Q

E

G

Q

N

G

G

E

A

G

G

R

L

R

P

G

G

A

V

F

F

P
|
P

T
x
P

L
|
L

A

A

G

-

N

K

R
x
S

A

D

V
x
F

L

L

L

A

A

A

D

D

T

P

T

K

N

R

L

A

V

M

Q

N

V
x
I

V

V

L

L

R

H

G

G

-

L

-
x
N

G
|
G

Y

K

L

I

P

K

A

V

T

N

A

-

G

G

N

Q

P

E

R

Y

P

D

H
x
S

G

V

M
|
M

P

P

F
x
M

T

T

Q

Q

S

-

L

L

R

N

D

D

E

D

E

E

I

V

A

A

S

N

V

I

L

L

S

T

Y

Y

I

V

R

L

N

N

A

S

W

W

G

D

N

N

E

P

A

G

K

R

V

V

D

S

T

A

I

E

D

D

V

V

Y

K

R

K

A

V

R

R

E

A

R

Q

binding heme c: T360 (≠ Q330), C361 (= C331), C364 (= C334), H365 (= H335), P377 (= P347), P378 (≠ T348), L379 (= L349), S382 (≠ R353), F384 (≠ V355), I395 (≠ V366), N401 (vs. gap), G402 (= G371), S413 (≠ H383), M415 (= M385), M418 (≠ F388)

Sites not aligning to the query:

active site: 91, 94, 96, 131, 132, 140, 145, 237, 259, 260, 286
binding copper (ii) ion: 91, 96, 131, 132, 140, 145
binding nitrite ion: 94, 96, 131

8hddB Complex structure of catalytic, small, and a partial electron transfer subunits from burkholderia cepacia fad glucose dehydrogenase (see paper)
38% identity, 23% coverage: 326:424/429 of query aligns to 25:121/121 of 8hddB

query
sites
8hddB

I

L

Y

Y

R

L

Q

G

Q

N

C
|
C

V

A

Q

T

C
|
C

H
|
H

G

Q

E

M

Q

Q

G

G

E

K

G

G

R

T

-

P

R

D

G

G

A

Y

F
x
Y

P
|
P

T

S

L

L

A

F

G

H

N

N

R

S

A
x
T

V

V

L

G

L

A

A

S

D

N

T

P

T

S

N

N

L

L

V

V

Q

Q

V
|
V

V
x
I

L

L

R

N

G

G

G

-

Y

-

L

V

P

Q

A
x
R

T

K

A

I

G

G

N

S

P

-

R

E

P

D

H
x
I

G

G

M
|
M

P
|
P

P

A

F

F

T

R

Q

Y

S

D

L

L

R

N

D

D

E

A

E

Q

I

I

A

A

S

A

V

L

L

T

S

N

Y

Y

I

V

R

T

N

A

A

Q

W

F

G

G

N

N

E

P

A

A

K

K

V

V

D

T

T

E

I

Q

D

D

V

V

Y

A

R

K

A

L

R

R

binding protoporphyrin ix containing fe: C30 (= C331), C33 (= C334), H34 (= H335), Y46 (≠ F346), P47 (= P347), T54 (≠ A354), V66 (= V366), I67 (≠ V367), R73 (≠ A375), I80 (≠ H383), M82 (= M385), P83 (= P386)

2zooA Crystal structure of nitrite reductase from pseudoalteromonas haloplanktis tac125
28% identity, 39% coverage: 258:424/429 of query aligns to 286:438/438 of 2zooA

query
sites
2zooA

A

A

V

L

A

A

L

M

L

L

K

K

T

V

-

E

G

G

V

P

S

D

P

D

Q

H

A

S

T

I

V

F

S

T

G

G

P

K

M

T

A

A

E

E

V

N

V

V

F

Y

-

L

-

P

-

E

-

G

R

S

S

A

L

I

Q

Q

Y

S

L

L

D

D

D

N

A

T

D

F

L

T

R

K

A

I

I

-

V

-

L

-

Y

-

L

-

R

-

S

-

L

-

P

-

Q

-

E

-

D

-

G

-

P

-

A

-

P

-

T

T

A

A

R

N

P

N

S

K

G

D

A

E

V

Q

M

I

E

R

K

F

G

G

R

Q

D

R

I

V

Y

Y

R

E

Q

A

Q

N

C
|
C

V

M

Q

A

C
|
C

H
|
H

G

Q

E

A

Q

N

G

G

E

E

G

G

R

I

R

P

G

G

A

A

F
|
F

P
|
P

T
x
P

L
|
L

A

A

G

-

N

-

R

K

A
x
S

V

D

L
x
Y

L

L

A

N

D

N

T

N

T

P

N

L

L

L

-

G

V

V

Q

N

V

A

V
x
I

L

I

R

K

G

G

G
x
L

Y
x
S

L
x
G

P

P

A
x
I

T

K

A
x
V

G

N

N

N

P

V

R

N

P
x
Y

H
x
N

G
|
G

M
x
V

P
x
M

P

P

F

-

T

A

Q

M

S

N

L

L

R

N

D

D

E

E

E

D

I

I

A

A

S

N

V

V

L

I

S

T

Y

F

I

V

R

L

N

N

A

N

W

W

G

D

N

N

E

A

A

G

K

K

V

V

D

S

T

A

I

E

D

Q

V

V

Y

A

R

K

A

Q

R

R

binding protoporphyrin ix containing fe: C347 (= C331), C350 (= C334), H351 (= H335), F362 (= F346), P363 (= P347), P364 (≠ T348), L365 (= L349), S368 (≠ A354), Y370 (≠ L356), I382 (≠ V367), L386 (≠ G371), S387 (≠ Y372), G388 (≠ L373), I390 (≠ A375), V392 (≠ A377), Y397 (≠ P382), N398 (≠ H383), G399 (= G384), V400 (≠ M385), M401 (≠ P386)

Sites not aligning to the query:

active site: 81, 84, 86, 121, 122, 130, 135, 227, 249, 250, 276
binding copper (ii) ion: 81, 86, 121, 122, 130, 135

1dt1A Thermus thermophilus cytochrome c552 synthesized by escherichia coli (see paper)
41% identity, 24% coverage: 323:425/429 of query aligns to 2:105/129 of 1dt1A

query
sites
1dt1A

G

G

R

A

D

K

I

I

Y

Y

R

-

Q

A

Q

Q

C
|
C

V

A

Q

G

C
|
C

H
|
H

G

Q

E

Q

Q

N

G

G

E

Q

G

G

R

I

R

P

G

G

A

A

F

F

P
|
P

T

P

L

L

A

A

G

G

N
x
H

R

V

A

A

V

E

L

I

L

L

A

A

D

K

T

E

T

G

N

G

-

R

-

E

-
x
Y

L

L

V

I

Q

L

V
|
V

V

L

L

L

R

Y

G

G

G

L

Y
x
Q

L
x
G

P

Q

A

I

T

E

A

V

G

K

N

G

P

M

R

K

P

Y

H

N

G
|
G

-

V

M
|
M

P

S

F
|
F

T

A

Q

Q

S

-

L

L

R

K

D

D

E

E

I

I

A

A

S

A

V

V

L

L

S

N

Y

H

I

I

R

A

N

T

A

A

W

W

G

G

N

-

E

D

A

A

A

K

K

K

V

V

D

K

T

G

I

F

D

K

V

P

Y

F

R

T

A

A

R

E

E

E

binding heme c: C9 (= C331), C12 (= C334), H13 (= H335), P25 (= P347), H30 (≠ N352), Y43 (vs. gap), V47 (= V366), Q53 (≠ Y372), G54 (≠ L373), G65 (= G384), M67 (= M385), F70 (= F388)

Sites not aligning to the query:

binding heme c: 123

1c52A Thermus thermophilus cytochrome-c552: a new highly thermostable cytochromE-C structure obtained by mad phasing (see paper)
41% identity, 24% coverage: 323:425/429 of query aligns to 4:107/131 of 1c52A

query
sites
1c52A

G

G

R

A

D

K

I

I

Y

Y

R

-

Q

A

Q

Q

C
|
C

V

A

Q

G

C
|
C

H
|
H

G

Q

E

Q

Q

N

G

G

E

Q

G

G

R

I

R

P

G

G

A

A

F
|
F

P
|
P

T

P

L
|
L

A

A

G

G

N
x
H

R

V

A

A

V

E

L

I

L

L

A

A

D

K

T

E

T

G

N

G

-

R

-

E

-
x
Y

L

L

V

I

Q

L

V

V

V

L

L

L

R

Y

G

G

G
x
L

Y
x
Q

L
x
G

P

Q

A

I

T

E

A

V

G

K

N

G

P

M

R

K

P

Y

H

N

G
|
G

-

V

M
|
M

P

S

F
|
F

T

A

Q

Q

S

-

L

L

R

K

D

D

E

E

I

I

A

A

S

A

V

V

L

L

S

N

Y

H

I

I

R

A

N

T

A

A

W

W

G

G

N

-

E

D

A

A

A

K

K

K

V

V

D

K

T

G

I

F

D

K

V

P

Y

F

R

T

A

A

R

E

E

E

binding protoporphyrin ix containing fe: C11 (= C331), C14 (= C334), H15 (= H335), F26 (= F346), P27 (= P347), L29 (= L349), H32 (≠ N352), Y45 (vs. gap), L54 (≠ G371), Q55 (≠ Y372), G56 (≠ L373), G67 (= G384), M69 (= M385), F72 (= F388)

Sites not aligning to the query:

binding protoporphyrin ix containing fe: 125

1r0qA Characterization of the conversion of the malformed, recombinant cytochrome rc552 to a 2-formyl-4-vinyl (spirographis) heme (see paper)
41% identity, 24% coverage: 323:425/429 of query aligns to 3:106/130 of 1r0qA

query
sites
1r0qA

G

G

R

A

D

K

I

I

Y

Y

R

-

Q

A

Q

Q

C

C

V

A

Q

G

C
|
C

H
|
H

G

Q

E

Q

Q

N

G

G

E

Q

G

G

R

I

R

P

G

G

A

A

F

F

P
|
P

T

P

L
|
L

A

A

G

G

N
x
H

R

V

A

A

V

E

L

I

L

L

A

A

D

K

T

E

T

G

N

G

-

R

-

E

-
x
Y

L

L

V

I

Q

L

V
|
V

V

L

L

L

R

Y

G

G

G

L

Y
x
Q

L
x
G

P

Q

A

I

T

E

A

V

G

K

N

G

P

M

R

K

P

Y

H

N

G
|
G

-

V

M
|
M

P

S

F

F

T

A

Q

Q

S

-

L

L

R

K

D

D

E

E

I

I

A

A

S

A

V

V

L

L

S

N

Y

H

I

I

R

A

N

T

A

A

W

W

G

G

N

-

E

D

A

A

A

K

K

K

V

V

D

K

T

G

I

F

D

K

V

P

Y

F

R

T

A

A

R

E

E

E

binding 2-formyl-protoporphryn ix: C13 (= C334), H14 (= H335), P26 (= P347), L28 (= L349), H31 (≠ N352), Y44 (vs. gap), V48 (= V366), Q54 (≠ Y372), G55 (≠ L373), G66 (= G384), M68 (= M385)

Sites not aligning to the query:

binding 2-formyl-protoporphryn ix: 124

1qyzA Characterization of the malformed, recombinant cytochrome rc552 (see paper)
41% identity, 24% coverage: 323:425/429 of query aligns to 3:106/130 of 1qyzA

query
sites
1qyzA

G

G

R

A

D

K

I

I

Y
|
Y

R

-

Q

A

Q

Q

C
|
C

V

A

Q

G

C
|
C

H
|
H

G

Q

E

Q

Q

N

G

G

E

Q

G

G

R

I

R

P

G

G

A

A

F

F

P
|
P

T

P

L

L

A

A

G

G

N
x
H

R

V

A

A

V

E

L

I

L

L

A

A

D

K

T

E

T

G

N

G

-

R

-

E

-
x
Y

L

L

V

I

Q

L

V

V

V

L

L

L

R

Y

G

G

G

L

Y
x
Q

L
x
G

P

Q

A

I

T

E

A

V

G

K

N

G

P

M

R

K

P

Y

H

N

G
|
G

-

V

M
|
M

P

S

F
|
F

T

A

Q

Q

S

-

L

L

R

K

D

D

E

E

I

I

A

A

S

A

V

V

L

L

S

N

Y

H

I

I

R

A

N

T

A

A

W

W

G

G

N

-

E

D

A

A

A

K

K

K

V

V

D

K

T

G

I

F

D

K

V

P

Y

F

R

T

A

A

R

E

E

E

binding 2-acetyl-protoporphyrin ix: Y7 (= Y327), C10 (= C331), C13 (= C334), H14 (= H335), P26 (= P347), H31 (≠ N352), Y44 (vs. gap), Q54 (≠ Y372), G55 (≠ L373), G66 (= G384), M68 (= M385), F71 (= F388)

Sites not aligning to the query:

binding 2-acetyl-protoporphyrin ix: 124

1kv9A Structure at 1.9 a resolution of a quinohemoprotein alcohol dehydrogenase from pseudomonas putida hk5 (see paper)
33% identity, 23% coverage: 308:404/429 of query aligns to 570:652/664 of 1kv9A

query
sites
1kv9A

P

P

A

Q

P

P

P

V

T

T

A

A

R

A

P

P

S

E

G

-

A

-

V

Q

M

V

E

Q

K

A

G

G

R

K

D

Q

I

L

Y

Y

R

G

Q

Q

Q
x
F

C
|
C

V

S

Q

V

C
|
C

H
|
H

G

G

E

-

Q

M

G

G

E

T

G

I

R

S

R

G

G

G

A

L

F
x
I

P
|
P

T

D

L
|
L

A

-

G

-

N

-

R

R

A

Q

V
x
S

L

S

L

D

A

A

D
x
T

T

R

T

E

N

H

L
x
F

V

Q

Q

Q

V

I

V
|
V

L

L

R

Q

G

G

G

A

Y

L

L

-

P

-

A

-

T

-

A

-

G

-

N

-

P

-

R

K

P

P

H
x
L

G

G

M
|
M

P

P

P

S

F
|
F

T

D

Q

D

S

S

L

L

R

K

D

P

E

E

I

V

A

E

S

Q

V

I

L

K

S

L

Y

Y

I

V

binding heme c: F590 (≠ Q330), C591 (= C331), C594 (= C334), H595 (= H335), I605 (≠ F346), P606 (= P347), L608 (= L349), S611 (≠ V355), T615 (≠ D359), F619 (≠ L363), V623 (= V367), L631 (≠ H383), M633 (= M385), F636 (= F388)

Sites not aligning to the query:

active site: 173, 250, 295
binding acetone: 173, 295
binding calcium ion: 173, 250, 295
binding heme c: 101, 102
binding pyrroloquinoline quinone: 59, 105, 106, 111, 155, 170, 172, 173, 230, 232, 322, 382, 383, 460, 525

Q8GR64 Quinohemoprotein alcohol dehydrogenase ADH IIB; ADH IIB; Alcohol dehydrogenase (azurin); EC 1.1.9.1 from Pseudomonas putida (Arthrobacter siderocapsulatus) (see 3 papers)
33% identity, 23% coverage: 308:404/429 of query aligns to 592:674/690 of Q8GR64

query
sites
Q8GR64

P
|
P

A
x
Q

P
|
P

P
x
V

T
|
T

A
|
A

R
x
A

P
|
P

S
x
E

G

-

A

-

V
x
Q

M
x
V

E
x
Q

K
x
A

G
|
G

R
x
K

D
x
Q

I
x
L

Y
|
Y

R
x
G

Q
|
Q

Q
x
F

C
|
C

V
x
S

Q
x
V

C
|
C

H
|
H

G
|
G

E

-

Q
x
M

G
|
G

E
x
T

G
x
I

R
x
S

R
x
G

G
|
G

A
x
L

F
x
I

P
|
P

T
x
D

L
|
L

A

-

G

-

N

-

R
|
R

A
x
Q

V
x
S

L
x
S

L
x
D

A
|
A

D
x
T

T
x
R

T
x
E

N
x
H

L
x
F

V
x
Q

Q
|
Q

V
x
I

V
|
V

L
|
L

R
x
Q

G
|
G

G
x
A

Y
x
L

L

-

P

-

A

-

T

-

A

-

G

-

N

-

P

-

R
x
K

P
|
P

H
x
L

G
|
G

M
|
M

P
|
P

P
x
S

F
|
F

T
x
D

Q
x
D

S
|
S

L
|
L

R
x
K

D
x
P

E
|
E

I
x
V

A
x
E

S
x
Q

V
x
I

L
x
K

S
x
L

Y
|
Y

I
x
V

C613 (= C331) binding covalent
C616 (= C334) binding covalent
H617 (= H335) binding axial binding residue
M655 (= M385) binding axial binding residue

Sites not aligning to the query:

1:22 signal peptide
23:690 modified: mature protein, Quinohemoprotein alcohol dehydrogenase ADH IIB
81 binding pyrroloquinoline quinone
127 modified: Disulfide link with 128
128 modified: Disulfide link with 127
133 binding pyrroloquinoline quinone
177 binding pyrroloquinoline quinone
193:194 binding pyrroloquinoline quinone
195 binding Ca(2+)
252 binding pyrroloquinoline quinone
272 binding Ca(2+)
317 binding Ca(2+)
344 binding pyrroloquinoline quinone
404:405 binding pyrroloquinoline quinone
547 binding pyrroloquinoline quinone

Query Sequence

>WP_013518775.1 NCBI__GCF_000204645.1:WP_013518775.1
MSVARVLLGWAVGCVVLAVAVGGGVVALNRLDEAALPADDAPLPATSEAIARGEYLARAG
NCMSCHTRQGGPAYAGGRAIDTPFGAVHASNLTPDDATGIGLWSAGEFWRALHNGRSRDG
RLLYPAFPYPSYTHITRADSDAIYAYLRSLPPVEQPNRPHALRFPFNTQVALAAWRALFF
RPGVLLEQPARSAEWNRGAYLVLGLGHCAACHTPRNALGAPRADAAFRGGLIPVQNWYAP
ALTSPHEAAVGAWPVEEAVALLKTGVSPQATVSGPMAEVVFRSLQYLDDADLRAIVLYLR
SLPQEDGPAPPTARPSGAVMEKGRDIYRQQCVQCHGEQGEGRRGAFPTLAGNRAVLLADT
TNLVQVVLRGGYLPATAGNPRPHGMPPFTQSLRDEEIASVLSYIRNAWGNEAAKVDTIDV
YRARERRGS

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory