SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_013528865.1 NCBI__GCF_000185905.1:WP_013528865.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 2 hits to proteins with known functional sites (download)

4ymtC Crystal structure of an amino acid abc transporter complex with arginines (see paper)
39% identity, 82% coverage: 45:264/269 of query aligns to 18:215/215 of 4ymtC

query
sites
4ymtC
G
 
G
I
 
L
G
 
I
V
 
M
T
 
T
I
 
L
F
 
K
V
 
L
T
 
T
V
 
F
V
 
L
A
 
A
F
 
V
V
 
T
L
 
I
A
 
G
S
 
V
A
 
L
I
 
M
G
 
G
L
 
L
G
 
F
I
 
I
A
 
A
L
 
L
M
 
M
G
 
K
M
 
M
S
 
S
G
 
S
S
 
I
R
 
K
W
 
P
L
 
I
R
 
K
Q
 
L
I
 
V
A
 
A
R
 
S
F
 
S
Y
 
Y
V
 
I
E
 
E
I
 
V
I
 
I
R
 
R
G
 
G
V
 
T
P
|
P
I
x
L
L
 
L
V
 
V
L
 
Q
L
 
L
F
 
L
W
 
L
I
 
I
A
 
-
F
 
-
A
 
-
G
 
-
A
 
-
P
 
-
A
 
-
F
 
-
V
 
-
A
 
-
A
 
-
W
 
Y
N
 
N
A
 
G
L
 
L
T
 
M
A
 
Q
P
 
-
L
 
-
Q
 
-
S
 
-
A
 
-
G
 
-
L
 
-
F
 
F
G
 
G
E
 
-
L
 
-
L
 
-
V
 
-
R
 
M
D
 
N
V
 
I
S
 
P
L
 
A
L
 
F
W
 
T
R
 
A
A
 
G
I
 
V
M
 
S
A
 
A
L
 
L
T
 
A
I
 
I
G
x
N
Y
 
S
S
 
S
A
 
A
F
x
Y
I
 
V
S
 
A
E
 
E
V
 
I
F
 
I
R
 
R
A
 
A
G
 
G
I
 
I
Q
 
Q
A
 
A
V
 
V
E
 
D
K
 
P
G
 
G
Q
 
Q
I
 
N
E
 
E
A
 
A
A
 
A
K
 
R
A
 
S
L
 
L
G
 
G
L
 
M
T
 
T
R
 
H
A
 
A
Q
 
M
R
 
A
F
 
M
R
 
R
L
 
Y
I
 
V
V
 
I
F
 
I
P
 
P
Q
 
Q
A
 
A
I
 
I
R
 
K
T
 
N
I
 
I
L
 
L
P
 
P
P
 
A
L
 
L
G
 
G
N
 
N
D
x
E
F
 
F
V
 
I
A
 
V
L
x
M
V
 
L
K
|
K
D
x
E
S
 
S
S
 
A
L
 
I
V
 
V
S
 
S
V
 
V
L
 
I
G
 
G
V
 
F
A
 
A
D
 
D
I
 
L
T
 
T
Q
 
R
M
 
Q
G
 
A
K
 
D
V
 
I
Y
 
I
A
 
Q
A
 
S
G
 
V
S
 
T
F
 
Y
R
 
R
F
 
Y
F
 
F
E
 
E
T
 
P
Y
 
Y
S
 
I
I
 
I
T
 
I
A
 
A
Y
 
A
I
 
I
Y
 
Y
L
 
F
I
 
V
L
 
M
T
 
T
V
 
L
G
 
T
L
 
F
S
 
S
L
 
K
A
 
L
L
 
L
R
 
S
A
 
L
L
 
F
E
 
E
R
 
R
R
 
R
L
 
L
R
 
R

4ymwC Crystal structure of an amino acid abc transporter with histidines (see paper)
39% identity, 81% coverage: 45:263/269 of query aligns to 18:214/214 of 4ymwC

query
sites
4ymwC
G
 
G
I
 
L
G
 
I
V
 
M
T
 
T
I
 
L
F
 
K
V
 
L
T
 
T
V
 
F
V
 
L
A
 
A
F
 
V
V
 
T
L
 
I
A
 
G
S
 
V
A
 
L
I
 
M
G
 
G
L
 
L
G
 
F
I
 
I
A
 
A
L
 
L
M
 
M
G
 
K
M
 
M
S
 
S
G
 
S
S
 
I
R
 
K
W
 
P
L
 
I
R
 
K
Q
 
L
I
 
V
A
 
A
R
 
S
F
 
S
Y
 
Y
V
 
I
E
 
E
I
 
V
I
 
I
R
 
R
G
 
G
V
 
T
P
 
P
I
 
L
L
 
L
V
 
V
L
 
Q
L
 
L
F
 
L
W
 
L
I
 
I
A
 
-
F
 
-
A
 
-
G
 
-
A
 
-
P
 
-
A
 
-
F
 
-
V
 
-
A
 
-
A
 
-
W
 
Y
N
 
N
A
 
G
L
 
L
T
 
M
A
 
Q
P
 
-
L
 
-
Q
 
-
S
 
-
A
 
-
G
 
-
L
 
-
F
 
F
G
 
G
E
 
-
L
 
-
L
 
-
V
 
-
R
 
M
D
 
N
V
 
I
S
 
P
L
 
A
L
 
F
W
 
T
R
 
A
A
 
G
I
 
V
M
 
S
A
 
A
L
 
L
T
 
A
I
 
I
G
x
N
Y
 
S
S
 
S
A
 
A
F
x
Y
I
 
V
S
 
A
E
 
E
V
 
I
F
 
I
R
 
R
A
 
A
G
 
G
I
 
I
Q
 
Q
A
 
A
V
 
V
E
 
D
K
 
P
G
 
G
Q
 
Q
I
 
N
E
 
E
A
 
A
A
 
A
K
 
R
A
 
S
L
 
L
G
 
G
L
 
M
T
 
T
R
 
H
A
 
A
Q
 
M
R
 
A
F
 
M
R
 
R
L
 
Y
I
 
V
V
 
I
F
 
I
P
 
P
Q
 
Q
A
 
A
I
 
I
R
 
K
T
 
N
I
 
I
L
 
L
P
 
P
P
 
A
L
 
L
G
 
G
N
 
N
D
x
E
F
 
F
V
 
I
A
 
V
L
 
M
V
 
L
K
 
K
D
x
E
S
 
S
S
 
A
L
 
I
V
 
V
S
 
S
V
 
V
L
 
I
G
 
G
V
 
F
A
 
A
D
 
D
I
 
L
T
 
T
Q
 
R
M
 
Q
G
 
A
K
 
D
V
 
I
Y
 
I
A
 
Q
A
 
S
G
 
V
S
 
T
F
 
Y
R
 
R
F
 
Y
F
 
F
E
 
E
T
 
P
Y
 
Y
S
 
I
I
 
I
T
 
I
A
 
A
Y
 
A
I
 
I
Y
 
Y
L
 
F
I
 
V
L
 
M
T
 
T
V
 
L
G
 
T
L
 
F
S
 
S
L
 
K
A
 
L
L
 
L
R
 
S
A
 
L
L
 
F
E
 
E
R
 
R
R
 
R
L
 
L

Query Sequence

>WP_013528865.1 NCBI__GCF_000185905.1:WP_013528865.1
MPPASSSKADFPWWLVVAVTLAIAVAVFVATSNLYAQVFATVAKGIGVTIFVTVVAFVLA
SAIGLGIALMGMSGSRWLRQIARFYVEIIRGVPILVLLFWIAFAGAPAFVAAWNALTAPL
QSAGLFGELLVRDVSLLWRAIMALTIGYSAFISEVFRAGIQAVEKGQIEAAKALGLTRAQ
RFRLIVFPQAIRTILPPLGNDFVALVKDSSLVSVLGVADITQMGKVYAAGSFRFFETYSI
TAYIYLILTVGLSLALRALERRLRRQHEE

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory