SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_013530399.1 NCBI__GCF_000185905.1:WP_013530399.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 2 hits to proteins with known functional sites (download)

4ymwC Crystal structure of an amino acid abc transporter with histidines (see paper)
35% identity, 24% coverage: 242:334/387 of query aligns to 79:170/214 of 4ymwC

query
sites
4ymwC
L
 
M
R
 
Q
G
 
F
G
 
G
L
 
M
R
 
N
I
 
I
P
 
P
P
 
A
E
 
F
F
 
T
A
 
A
T
 
G
L
 
V
A
 
S
I
 
-
A
 
A
I
 
L
A
 
A
I
 
I
Y
x
N
G
 
S
G
 
S
S
 
A
Y
|
Y
I
 
V
A
 
A
E
 
E
I
 
I
V
 
I
R
 
R
G
 
A
G
 
G
F
 
I
K
 
Q
S
 
A
V
 
V
G
 
D
T
 
P
G
 
G
Q
 
Q
V
 
N
E
 
E
A
 
A
A
 
A
L
 
R
S
 
S
L
 
L
G
 
G
L
 
M
S
 
T
P
 
H
W
 
A
R
 
M
V
 
A
F
 
M
T
 
R
L
 
Y
V
 
V
R
 
I
L
 
I
P
 
P
L
 
Q
A
 
A
L
 
I
R
 
K
A
 
N
M
 
I
L
 
L
P
 
P
I
 
A
L
 
L
A
 
G
N
 
N
Q
x
E
Y
 
F
V
 
I
W
 
V
L
 
M
M
 
L
K
 
K
A
x
E
T
 
S
T
 
A
M
 
I
G
 
V
I
 
S
A
 
V
V
 
I
G
 
G
F
 
F
T
 
A
D
 
D

4ymtC Crystal structure of an amino acid abc transporter complex with arginines (see paper)
36% identity, 22% coverage: 250:334/387 of query aligns to 86:170/215 of 4ymtC

query
sites
4ymtC
P
 
P
E
 
A
F
 
F
A
 
T
T
 
A
L
 
G
A
 
V
I
 
S
A
 
A
I
 
L
A
 
A
I
 
I
Y
x
N
G
 
S
G
 
S
S
 
A
Y
|
Y
I
 
V
A
 
A
E
 
E
I
 
I
V
 
I
R
 
R
G
 
A
G
 
G
F
 
I
K
 
Q
S
 
A
V
 
V
G
 
D
T
 
P
G
 
G
Q
 
Q
V
 
N
E
 
E
A
 
A
A
 
A
L
 
R
S
 
S
L
 
L
G
 
G
L
 
M
S
 
T
P
 
H
W
 
A
R
 
M
V
 
A
F
 
M
T
 
R
L
 
Y
V
 
V
R
 
I
L
 
I
P
 
P
L
 
Q
A
 
A
L
 
I
R
 
K
A
 
N
M
 
I
L
 
L
P
 
P
I
 
A
L
 
L
A
 
G
N
 
N
Q
x
E
Y
 
F
V
 
I
W
 
V
L
x
M
M
 
L
K
|
K
A
x
E
T
 
S
T
 
A
M
 
I
G
 
V
I
 
S
A
 
V
V
 
I
G
 
G
F
 
F
T
 
A
D
 
D

Sites not aligning to the query:

Query Sequence

>WP_013530399.1 NCBI__GCF_000185905.1:WP_013530399.1
MVSLLRNQKVRNALLQVLYVGSIAAMVLAGIVIARRNLADQGITSGFDFLFKSTGWDVNF
SLLPATANDPYWWYFLIGIINTLFLGSVGLILATIVGTIVGLARTSSNDLARLLGRTYVD
IFRNIPLILQVFFWYAIITHLPTPRSAHEAWGFLLTSRGLYIPFPNVGSAAFAAATVAVI
AAIVLPAWLGRTSLLAQPIGQRRTIQFAAAAAALACATIILALGRLPDTPLLDFPALQGL
NLRGGLRIPPEFATLAIAIAIYGGSYIAEIVRGGFKSVGTGQVEAALSLGLSPWRVFTLV
RLPLALRAMLPILANQYVWLMKATTMGIAVGFTDFFMIVALTINHSGQTLEAIGILMAGF
LAINLSLAAVFNRINKAIALKGNQLRG

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory