SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_013533449.1 NCBI__GCF_000185905.1:WP_013533449.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 2 hits to proteins with known functional sites (download)

4ymtC Crystal structure of an amino acid abc transporter complex with arginines (see paper)
32% identity, 83% coverage: 37:245/253 of query aligns to 10:215/215 of 4ymtC

query
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4ymtC
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F
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M
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E
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I
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A
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N
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M
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R

4ymwC Crystal structure of an amino acid abc transporter with histidines (see paper)
31% identity, 84% coverage: 37:248/253 of query aligns to 10:214/214 of 4ymwC

query
sites
4ymwC
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L

Query Sequence

>WP_013533449.1 NCBI__GCF_000185905.1:WP_013533449.1
MNLDRQPEDADRRKAVIWYGCLAFLCFVGAWKAAGFRWAPIWPSAGLIAQGLWLSIQLSI
LSTAIGLAAAIPLAVARVHGSSFARIPAVFLIEIVRATPELMVIFWVYFGAPAITGQPID
GWTAALVAMSIIAASYLAEVIRAGLYSVDKGQWEAAASTGLNNWQSFKWIILPQAISNMM
PALLSQVIMLFKTTSLVSMVGVIDFFRAAQITNSNTFSPYAIYTLVGIGYFIICGTLSLV
VKRWRGRVSAVGA

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory