Comparing WP_013536950.1 NCBI__GCF_000185805.1:WP_013536950.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
2x5dD Crystal structure of a probable aminotransferase from pseudomonas aeruginosa (see paper)
58% identity, 95% coverage: 16:401/406 of query aligns to 1:380/380 of 2x5dD
6l1lB Apo-bacf structure from bacillus subtillis (see paper)
40% identity, 95% coverage: 9:394/406 of query aligns to 9:386/393 of 6l1lB
6l1oB Product bound bacf structure from bacillus subtillis (see paper)
40% identity, 95% coverage: 9:394/406 of query aligns to 9:386/392 of 6l1oB
6l1nA Substrate bound bacf structure from bacillus subtillis (see paper)
40% identity, 95% coverage: 9:394/406 of query aligns to 9:385/393 of 6l1nA
2o1bA Structure of aminotransferase from staphylococcus aureus
33% identity, 88% coverage: 34:389/406 of query aligns to 21:365/376 of 2o1bA
1gdeA Crystal structure of pyrococcus protein a-1 e-form (see paper)
32% identity, 91% coverage: 32:401/406 of query aligns to 25:387/388 of 1gdeA
1gd9A Crystall structure of pyrococcus protein-a1 (see paper)
32% identity, 91% coverage: 32:401/406 of query aligns to 25:387/388 of 1gd9A
Q56232 Aspartate/prephenate aminotransferase; AspAT / PAT; Transaminase A; EC 2.6.1.1; EC 2.6.1.78 from Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8) (see 3 papers)
31% identity, 93% coverage: 8:384/406 of query aligns to 7:372/385 of Q56232
1bkgA Aspartate aminotransferase from thermus thermophilus with maleate (see paper)
31% identity, 93% coverage: 8:384/406 of query aligns to 7:372/382 of 1bkgA
1bjwA Aspartate aminotransferase from thermus thermophilus (see paper)
31% identity, 93% coverage: 8:384/406 of query aligns to 7:372/382 of 1bjwA
1b5oA Thermus thermophilus aspartate aminotransferase single mutant 1 (see paper)
31% identity, 93% coverage: 8:384/406 of query aligns to 7:372/382 of 1b5oA
1gc4A Thermus thermophilus aspartate aminotransferase tetra mutant 2 complexed with aspartate (see paper)
30% identity, 93% coverage: 8:384/406 of query aligns to 7:372/382 of 1gc4A
1gc3A Thermus thermophilus aspartate aminotransferase tetra mutant 2 complexed with tryptophan (see paper)
30% identity, 93% coverage: 8:384/406 of query aligns to 7:372/382 of 1gc3A
3jtxB Crystal structure of aminotransferase (np_283882.1) from neisseria meningitidis z2491 at 1.91 a resolution
29% identity, 95% coverage: 9:392/406 of query aligns to 5:388/393 of 3jtxB
1o4sB Crystal structure of aspartate aminotransferase (tm1255) from thermotoga maritima at 1.90 a resolution (see paper)
29% identity, 92% coverage: 22:393/406 of query aligns to 26:379/384 of 1o4sB
1j32A Aspartate aminotransferase from phormidium lapideum
29% identity, 97% coverage: 7:399/406 of query aligns to 5:383/388 of 1j32A
Q58097 (5-formylfuran-3-yl)methyl phosphate transaminase; 4-HFC-P:alanine aminotransferase; EC 2.6.1.108 from Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii)
28% identity, 93% coverage: 23:398/406 of query aligns to 20:370/370 of Q58097
2o0rA The three-dimensional structure of n-succinyldiaminopimelate aminotransferase from mycobacterium tuberculosis (see paper)
30% identity, 95% coverage: 7:390/406 of query aligns to 1:378/385 of 2o0rA
P14909 Aspartate aminotransferase; AspAT; Transaminase A; EC 2.6.1.1 from Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) (Sulfolobus solfataricus) (see 3 papers)
28% identity, 90% coverage: 34:398/406 of query aligns to 37:397/402 of P14909
Sites not aligning to the query:
6f35A Crystal structure of the aspartate aminotranferase from rhizobium meliloti (see paper)
28% identity, 92% coverage: 27:398/406 of query aligns to 26:398/400 of 6f35A
>WP_013536950.1 NCBI__GCF_000185805.1:WP_013536950.1
MSRFQFARIDRLPPYVFAVVNDLKMKLRRAGEDIVDLGMGNPDLPTPKHIVDKLCEAAQN
PKNHRYSQTKGLYKLREALALWYNRKYSVELDPETEVITTIGSKEGLAHLALTLINPGDV
AIVPTPAYPIHPYSIIIAGGDVRSVPLLDEEDHFNEELFLERIIKAYKESWPRPKVLILN
FPHNPTTATVSLSFFEKVVDFARENNLIVIQDIAYAEIAFDGYVPPSILQVKGAKDVAVE
FYSLSKTYSMAGWRVGFAAGNKEIIHALYRMKSYLDYGMFQPIQIAAIIALKGDQSCVEE
YRKIYESRRNTLVEGLNRIGWHVEKPKATMFVWAKIPEKFQSMGSLEFAKMLLLDGKVAV
SPGIGFGEYGDKYVRFALVENELRIKQAVRGIKRAFEKYGLRNIKV
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory