SitesBLAST
Comparing WP_013537848.1 NCBI__GCF_000185805.1:WP_013537848.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
6thqB Crystal structure of branched-chain aminotransferase from thermophilic archaea thermoproteus uzoniensis with norvaline
46% identity, 98% coverage: 6:304/304 of query aligns to 10:301/301 of 6thqB
- active site: F37 (= F33), K156 (= K155), E190 (= E189), L214 (= L213)
- binding pyridoxal-5'-phosphate: R60 (= R58), K156 (= K155), Y161 (= Y160), E190 (= E189), N195 (= N194), L214 (= L213), G216 (= G215), I217 (= I216), T218 (= T217), T254 (= T254)
- binding 2-[o-phosphonopyridoxyl]-amino-pentanoic acid: R60 (= R58), Y97 (= Y95), K156 (= K155), Y161 (= Y160), E190 (= E189), G193 (= G192), E194 (= E193), N195 (= N194), G216 (= G215), I217 (= I216), T218 (= T217), G253 (= G253), T254 (= T254), A255 (= A255)
6q8eA Crystal structure of branched-chain amino acid aminotransferase from thermobaculum terrenum in pmp-form (see paper)
41% identity, 99% coverage: 3:303/304 of query aligns to 4:304/307 of 6q8eA
- active site: F34 (= F33), K156 (= K155), E190 (= E189), L214 (= L213)
- binding 4'-deoxy-4'-aminopyridoxal-5'-phosphate: R59 (= R58), K156 (= K155), Y161 (= Y160), E190 (= E189), G193 (= G192), S194 (≠ E193), C195 (≠ N194), L214 (= L213), S216 (≠ G215), I217 (= I216), T218 (= T217), G254 (= G253), T255 (= T254)
7neaA Crystal structure of branched-chain amino acid aminotransferase from thermobaculum terrenum (m3 mutant). (see paper)
40% identity, 99% coverage: 3:303/304 of query aligns to 4:304/309 of 7neaA
- active site: F34 (= F33), K156 (= K155), E190 (= E189), L214 (= L213)
- binding pyridoxal-5'-phosphate: R59 (= R58), K156 (= K155), Y161 (= Y160), E190 (= E189), G193 (= G192), S194 (≠ E193), L214 (= L213), S216 (≠ G215), I217 (= I216), T218 (= T217), T255 (= T254)
6h65C Crystal structure of the branched-chain-amino-acid aminotransferase from haliangium ochraceum
37% identity, 99% coverage: 3:304/304 of query aligns to 5:307/308 of 6h65C
- active site: F35 (= F33), K158 (= K155), E192 (= E189), L216 (= L213)
- binding pyridoxal-5'-phosphate: R60 (= R58), K158 (= K155), Y163 (= Y160), E192 (= E189), A196 (≠ E193), L216 (= L213), S218 (≠ G215), V219 (≠ I216), T220 (= T217), G256 (= G253), T257 (= T254)
2ej0B Crystal structure of t.Th.Hb8 branched-chain amino acid aminotransferase with pyridoxamine 5'-phosphate
44% identity, 97% coverage: 6:301/304 of query aligns to 8:302/305 of 2ej0B
- active site: F35 (= F33), G37 (= G35), K158 (= K155), E192 (= E189), L215 (= L213)
- binding 4'-deoxy-4'-aminopyridoxal-5'-phosphate: R58 (= R58), Y163 (= Y160), E192 (= E189), G195 (= G192), E196 (= E193), L215 (= L213), G217 (= G215), I218 (= I216), T219 (= T217), G254 (= G253), T255 (= T254)
2ej3A Crystal structure of t.Th.Hb8 branched-chain amino acid aminotransferase complexed with gabapentin
43% identity, 97% coverage: 6:301/304 of query aligns to 8:294/297 of 2ej3A
- active site: F35 (= F33), G37 (= G35), K150 (= K155), E184 (= E189), L207 (= L213)
- binding [1-(aminomethyl)cyclohexyl]acetic acid: G187 (= G192), G246 (= G253), T247 (= T254), A248 (= A255)
- binding pyridoxal-5'-phosphate: R58 (= R58), K150 (= K155), Y155 (= Y160), E184 (= E189), G187 (= G192), L207 (= L213), G209 (= G215), I210 (= I216), T211 (= T217), G246 (= G253), T247 (= T254)
2eiyA Crystal structure of t.Th.Hb8 branched-chain amino acid aminotransferase complexed with 4-methylvaleric acid
43% identity, 97% coverage: 6:301/304 of query aligns to 8:294/297 of 2eiyA
- active site: F35 (= F33), G37 (= G35), K150 (= K155), E184 (= E189), L207 (= L213)
- binding 4-methyl valeric acid: F35 (= F33), Y94 (= Y95), T247 (= T254), A248 (= A255)
- binding pyridoxal-5'-phosphate: R58 (= R58), K150 (= K155), Y155 (= Y160), E184 (= E189), G187 (= G192), E188 (= E193), L207 (= L213), G209 (= G215), I210 (= I216), T211 (= T217), G246 (= G253), T247 (= T254)
1wrvA Crystal structure of t.Th.Hb8 branched-chain amino acid aminotransferase
43% identity, 97% coverage: 6:301/304 of query aligns to 8:294/297 of 1wrvA
- active site: F35 (= F33), G37 (= G35), K150 (= K155), E184 (= E189), L207 (= L213)
- binding pyridoxal-5'-phosphate: R58 (= R58), K150 (= K155), Y155 (= Y160), E184 (= E189), G187 (= G192), L207 (= L213), G209 (= G215), I210 (= I216), T211 (= T217), T247 (= T254)
4whxA X-ray crystal structure of an amino acid aminotransferase from burkholderia pseudomallei bound to the co-factor pyridoxal phosphate
42% identity, 98% coverage: 6:303/304 of query aligns to 10:306/306 of 4whxA
2ej2A Crystal structure of t.Th.Hb8 branched-chain amino acid aminotransferase complexed with n-(5'-phosphopyridoxyl)-l-glutamate
44% identity, 97% coverage: 6:301/304 of query aligns to 8:291/294 of 2ej2A
- active site: F35 (= F33), G37 (= G35), K147 (= K155), E181 (= E189), L204 (= L213)
- binding 4-[(1,3-dicarboxy-propylamino)-methyl]-3-hydroxy-2-methyl-5-phosphonooxymethyl-pyridinium: R58 (= R58), Y94 (= Y95), Y152 (= Y160), E181 (= E189), G184 (= G192), E185 (= E193), L204 (= L213), G206 (= G215), I207 (= I216), T208 (= T217), T244 (= T254), A245 (= A255)
1iyeA Crystal structure of eschelichia coli branched-chain amino acid aminotransferase (see paper)
39% identity, 99% coverage: 4:303/304 of query aligns to 4:303/304 of 1iyeA
- active site: F33 (= F33), G35 (= G35), K156 (= K155), A157 (≠ V156), E190 (= E189), L214 (= L213)
- binding N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)-L-glutamic acid: R56 (= R58), Y92 (= Y95), Y126 (= Y128), K156 (= K155), Y161 (= Y160), E190 (= E189), G193 (= G192), E194 (= E193), N195 (= N194), L214 (= L213), G216 (= G215), I217 (= I216), T218 (= T217), G253 (= G253), T254 (= T254), A255 (= A255)
1iydA Crystal structure of eschelichia coli branched-chain amino acid aminotransferase (see paper)
39% identity, 99% coverage: 4:303/304 of query aligns to 4:303/304 of 1iydA
- active site: F33 (= F33), G35 (= G35), K156 (= K155), A157 (≠ V156), E190 (= E189), L214 (= L213)
- binding glutaric acid: Y92 (= Y95), Y126 (= Y128), A255 (= A255)
- binding pyridoxal-5'-phosphate: R56 (= R58), K156 (= K155), Y161 (= Y160), E190 (= E189), G193 (= G192), E194 (= E193), L214 (= L213), G216 (= G215), I217 (= I216), T218 (= T217), T254 (= T254)
1i1mA Crystal structure of escherichia coli branched-chain amino acid aminotransferase. (see paper)
39% identity, 99% coverage: 4:303/304 of query aligns to 4:303/304 of 1i1mA
- active site: K156 (= K155)
- binding 4-methyl valeric acid: Y92 (= Y95), K156 (= K155), T254 (= T254), A255 (= A255)
- binding pyridoxal-5'-phosphate: R56 (= R58), K156 (= K155), Y161 (= Y160), E190 (= E189), G193 (= G192), E194 (= E193), L214 (= L213), G216 (= G215), I217 (= I216), T218 (= T217), G253 (= G253), T254 (= T254)
1i1lA Crystal structure of eschelichia coli branched-chain amino acid aminotransferase. (see paper)
39% identity, 99% coverage: 4:303/304 of query aligns to 4:303/304 of 1i1lA
- active site: K156 (= K155)
- binding 2-methylleucine: Y92 (= Y95), K156 (= K155), T254 (= T254), A255 (= A255)
- binding pyridoxal-5'-phosphate: R56 (= R58), K156 (= K155), Y161 (= Y160), E190 (= E189), G193 (= G192), G216 (= G215), I217 (= I216), T218 (= T217), T254 (= T254)
5mr0D Thermophilic archaeal branched-chain amino acid transaminases from geoglobus acetivorans and archaeoglobus fulgidus: biochemical and structural characterisation (see paper)
41% identity, 97% coverage: 4:297/304 of query aligns to 3:290/290 of 5mr0D
- active site: F32 (= F33), G34 (= G35), K150 (= K155), E183 (= E189), L206 (= L213)
- binding 3-[o-phosphonopyridoxyl]--amino-benzoic acid: R51 (= R58), G100 (≠ K106), L101 (≠ I107), K150 (= K155), Y154 (= Y160), E183 (= E189), G186 (= G192), D187 (≠ E193), L206 (= L213), I209 (= I216), T210 (= T217), G245 (= G253), T246 (= T254)
5e25A Crystal structure of branched-chain aminotransferase from thermophilic archaea geoglobus acetivorans complexed with alpha-ketoglutarate (see paper)
42% identity, 93% coverage: 4:285/304 of query aligns to 4:278/290 of 5e25A
- active site: F33 (= F33), G35 (= G35), K151 (= K155), E184 (= E189), L207 (= L213)
- binding 2-oxoglutaric acid: Y88 (= Y95), K151 (= K155), T247 (= T254), A248 (= A255)
- binding pyridoxal-5'-phosphate: R52 (= R58), K151 (= K155), Y155 (= Y160), E184 (= E189), G187 (= G192), D188 (≠ E193), L207 (= L213), G209 (= G215), I210 (= I216), T211 (= T217), G246 (= G253), T247 (= T254)
3cswC Crystal structure of a putative branched-chain amino acid aminotransferase (tm0831) from thermotoga maritima at 2.15 a resolution
33% identity, 91% coverage: 6:283/304 of query aligns to 6:259/275 of 3cswC
- active site: Y33 (≠ F33), K135 (= K155), E166 (= E189), L190 (= L213)
- binding pyridoxal-5'-phosphate: R52 (= R58), K135 (= K155), E166 (= E189), F169 (≠ G192), S170 (≠ E193), L190 (= L213), G192 (= G215), I193 (= I216), T194 (= T217), T230 (= T254)
7p3tB Transaminase of gamma-proteobacterium (see paper)
29% identity, 93% coverage: 6:288/304 of query aligns to 7:282/299 of 7p3tB
- binding pyridoxal-5'-phosphate: R53 (= R58), K153 (= K155), R157 (≠ Y160), E186 (= E189), S187 (≠ G190), A188 (≠ S191), A189 (≠ G192), S190 (≠ E193), G210 (= G215), I211 (= I216), T212 (= T217), T248 (= T254)
8aieB Crystal structure of d-amino acid aminotransferase from aminobacterium colombiense complexed with d-cycloserine
30% identity, 94% coverage: 4:289/304 of query aligns to 3:270/275 of 8aieB
- binding 3-azanyloxy-2-[(~{E})-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylideneamino]propanoic acid: T34 (≠ G35), R51 (= R58), K142 (≠ C154), Y146 (= Y160), E172 (= E189), H175 (≠ G192), S176 (≠ E193), T198 (≠ I216), T199 (= T217), G234 (= G253), T235 (= T254), V236 (≠ A255), K237 (≠ A256)
- binding 4'-deoxy-4'-aminopyridoxal-5'-phosphate: R51 (= R58), Y146 (= Y160), E172 (= E189), S174 (= S191), H175 (≠ G192), S176 (≠ E193), L195 (= L213), T198 (≠ I216), T199 (= T217), G234 (= G253), T235 (= T254)
P19938 D-alanine aminotransferase; D-amino acid aminotransferase; D-amino acid transaminase; DAAT; D-aspartate aminotransferase; EC 2.6.1.21 from Bacillus sp. (strain YM-1) (see 5 papers)
30% identity, 94% coverage: 1:285/304 of query aligns to 1:273/283 of P19938
- M1 (= M1) modified: Initiator methionine, Removed
- Y32 (≠ F33) binding substrate
- R51 (= R58) binding pyridoxal 5'-phosphate
- R99 (≠ I99) binding substrate
- H101 (≠ Y101) binding substrate
- K146 (≠ A157) active site, Proton acceptor; modified: N6-(pyridoxal phosphate)lysine
- E178 (= E189) binding pyridoxal 5'-phosphate; mutation to K: Loss of transaminase activity and small gain in racemase activity.
- L202 (= L213) mutation to A: Inactivates enzyme.
Query Sequence
>WP_013537848.1 NCBI__GCF_000185805.1:WP_013537848.1
MGRFAYFEGKFVPVEEANINIQTNSFHYGTAVFEGIRAYWNEEKKQLFGLFVKEHYERML
ANCKILNLKVEKSAQELTEITVELLRRCGHREDTYIRPIAYFADLKISPKLIGYKTELAI
YTVPLGDYLDLSRGLKAKTASWHRINDTMIPARCKVAGAYVNSAFAKTEALLNGYDEAIM
LNPDGTVAEGSGENVFIVRNGKLITTPSASNILEGITRNAVIHLAREELGIEVEERPILR
SELYVADEVFYTGTAAQVAPVVQVDHVVIGNGEVGPVTKRLQEIYFSIVKGNNPKYEHWL
TPVY
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SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory