Comparing WP_013554635.1 NCBI__GCF_000186245.1:WP_013554635.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 2 hits to proteins with known functional sites (download)
4ymtC Crystal structure of an amino acid abc transporter complex with arginines (see paper)
34% identity, 34% coverage: 250:380/384 of query aligns to 86:215/215 of 4ymtC
Sites not aligning to the query:
4ymwC Crystal structure of an amino acid abc transporter with histidines (see paper)
35% identity, 34% coverage: 250:379/384 of query aligns to 86:214/214 of 4ymwC
>WP_013554635.1 NCBI__GCF_000186245.1:WP_013554635.1
MPSFLRDEKIRGILYQIIAITLFVGFLFYIAQNTAHNIEQRGIKTGFAFLHDTAGFDITE
SPIPFTPASTHLKVFEVGLLNTLIVSFWGIVFSSLIGLLIGIWRLSPNWLINRIAAAYIE
TFRNIPVLLQILFWYNVVLATLPSTRHSLNFFNAVFINNRGFFMPKLVFQDGAWMIGAAI
VAAIIGIIFVHRWAKKRQEETGEQFPVFLTGIILLIGLPLLAYLIAGRPVTAVYPELHGF
NFRGGKTFTPEFLALLFALSIYTATFIAEAIRSGIEAVPKGQKEAATSLGLSPLQQLRLV
ILPQAVRIAIPSIINQYLNLIKNSSLAAAIGYPELVTIFAGTSLNQTGQALEILLITMLT
YLLISLIVSLILNWFNAKMKIKER
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory