Comparing WP_013554812.1 NCBI__GCF_000186245.1:WP_013554812.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 11 hits to proteins with known functional sites (download)
3r5cA Pseudomonas aeruginosa dapd (pa3666) in complex with coa and succinate (see paper)
37% identity, 82% coverage: 71:397/397 of query aligns to 19:336/338 of 3r5cA
3r5bA Pseudomonas aeruginosa dapd (pa3666) in complex with l-2-aminopimelate (see paper)
40% identity, 72% coverage: 71:355/397 of query aligns to 16:305/321 of 3r5bA
3r5aA Pseudomonas aeruginosa dapd (pa3666) in complex with d-2-aminopimelate (see paper)
40% identity, 72% coverage: 71:355/397 of query aligns to 16:305/321 of 3r5aA
5e3rA Crystal structure of dapd in complex with 2-aminopimelate from corynebacterium glutamicum (see paper)
41% identity, 66% coverage: 125:388/397 of query aligns to 43:277/277 of 5e3rA
5e3qA Crystal structure of dapd in complex with succinyl-coa from corynebacterium glutamicum (see paper)
41% identity, 66% coverage: 125:388/397 of query aligns to 43:277/278 of 5e3qA
P9WP21 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; Tetrahydrodipicolinate N-succinyltransferase; THDP succinyltransferase; THP succinyltransferase; Tetrahydropicolinate succinylase; EC 2.3.1.117 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see paper)
41% identity, 66% coverage: 137:397/397 of query aligns to 75:315/317 of P9WP21
3fsyB Structure of tetrahydrodipicolinate n-succinyltransferase (rv1201c;dapd) in complex with succinyl-coa from mycobacterium tuberculosis (see paper)
42% identity, 62% coverage: 137:384/397 of query aligns to 73:301/307 of 3fsyB
3tdtA Complex of tetrahydrodipicolinate n-succinyltransferase with 2-amino- 6-oxopimelate and coenzyme a (see paper)
33% identity, 25% coverage: 211:310/397 of query aligns to 89:188/274 of 3tdtA
Sites not aligning to the query:
2tdtA Complex of tetrahydrodipicolinate n-succinyltransferase with 2- aminopimelate and coenzyme a (see paper)
33% identity, 25% coverage: 211:310/397 of query aligns to 89:188/274 of 2tdtA
Sites not aligning to the query:
1kgtA Crystal structure of tetrahydrodipicolinate n-succinyltransferase in complex with pimelate and succinyl-coa (see paper)
33% identity, 25% coverage: 211:310/397 of query aligns to 89:188/274 of 1kgtA
Sites not aligning to the query:
1kgqA Crystal structure of tetrahydrodipicolinate n-succinyltransferase in complex with l-2-aminopimelate and succinamide-coa (see paper)
33% identity, 25% coverage: 211:310/397 of query aligns to 89:188/274 of 1kgqA
Sites not aligning to the query:
>WP_013554812.1 NCBI__GCF_000186245.1:WP_013554812.1
MAIETVTSTEAFKTLVEEIKASEGYREPVAFGIARVDRGQKNADKVLQANYAIVNWKENY
GSAAIFIKALQESRVEVDFSGSEFVATIGDEFVKNAMNAFTPYLAEAVGEAHKNVQVIKT
LAAMEDIGRNFRITFLFEDAAPRSVEAVYLKLYALSLGKAPLRGVNLNGAFGVLSNVAWV
GNKPYELEYLRENEIEMKLNGTFPNIDSVDKFPRYLQHIIPADNTRILDTSKVRMGAQLA
PGTTVMPGASYINFNAGTLGPVMVEGRISSSAVVGSGSDVGGGASILGVLSGTDGNPISI
GENTLLGANSVTGVPLGDGCIVDAGIAVLAGTKIRIDEDQLEKIKAANPEADLEDKTVFK
GAELQGLNGIHYRIDSLSGEMVARRSTREVKLNEELH
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory