SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_013643971.1 NCBI__GCF_000191585.1:WP_013643971.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 2 hits to proteins with known functional sites (download)

5odcD Heterodisulfide reductase / [nife]-hydrogenase complex from methanothermococcus thermolithotrophicus at 2.3 a resolution (see paper)
65% identity, 96% coverage: 3:138/142 of query aligns to 1:136/138 of 5odcD

query
sites
5odcD
E
 
E
D
 
W
D
 
E
V
 
P
K
 
K
I
 
I
V
 
I
M
 
G
F
 
F
C
 
C
C
|
C
N
 
N
W
 
W
C
 
C
S
 
T
Y
 
Y
G
 
G
G
 
G
A
 
A
D
 
D
T
 
T
A
 
A
G
 
G
T
 
V
A
 
G
R
 
R
M
 
M
Q
 
Q
Y
 
Y
P
 
P
P
 
P
N
 
S
V
 
I
R
 
R
V
 
I
I
 
I
R
 
R
V
 
V
M
 
M
C
|
C
S
|
S
G
 
G
R
 
R
I
 
I
E
 
E
P
 
P
Q
 
S
F
 
L
V
 
I
F
 
L
K
 
K
A
 
A
F
 
F
R
 
K
E
 
E
G
 
G
A
 
A
D
 
D
G
 
G
V
 
V
I
 
F
V
 
V
A
 
G
G
 
G
C
|
C
H
 
H
H
 
L
G
 
G
D
 
D
C
|
C
H
|
H
Y
 
Y
D
 
D
A
 
S
G
 
G
N
 
N
Y
 
Y
K
 
K
L
 
W
D
 
Q
R
 
R
R
 
R
M
 
V
R
 
M
L
 
M
I
 
L
Y
 
Y
K
 
E
L
 
L
A
 
L
E
 
E
D
 
E
L
 
L
G
 
G
I
 
I
G
 
E
R
 
K
E
 
E
R
 
R
I
 
L
Y
 
N
H
 
H
D
 
E
W
 
W
I
 
I
S
 
S
A
 
A
S
 
S
E
 
E
G
 
G
E
 
E
K
 
K
F
 
F
A
 
Q
N
 
N
T
 
T
V
 
M
T
 
K
M
 
D
M
 
F
V
 
Y
N
 
N
R
 
K
I
 
I
K
 
E
G
 
A
L
 
L
G
 
G
K
 
P
S
 
C
P
 
K
L
 
L
K
 
K
E
 
E
Q
 
E
L
 
L

7bkbF Formate dehydrogenase - heterodisulfide reductase - formylmethanofuran dehydrogenase complex from methanospirillum hungatei (hexameric, composite structure) (see paper)
55% identity, 92% coverage: 7:136/142 of query aligns to 5:134/137 of 7bkbF

query
sites
7bkbF
K
 
Q
I
 
I
V
 
L
M
 
A
F
 
I
C
 
I
C
|
C
N
 
N
W
|
W
C
 
C
S
 
S
Y
 
Y
G
 
A
G
 
G
A
 
A
D
 
D
T
 
L
A
 
A
G
 
G
T
 
G
A
 
A
R
 
R
M
 
I
Q
 
Q
Y
 
Y
P
 
P
P
 
P
N
 
T
V
 
V
R
 
R
V
 
A
I
 
I
R
 
R
V
 
V
M
 
M
C
|
C
S
x
T
G
 
G
R
 
R
I
 
V
E
 
D
P
 
M
Q
 
L
F
 
F
V
 
I
F
 
L
K
 
K
A
 
A
F
 
F
R
 
V
E
 
E
G
 
G
A
 
A
D
 
D
G
 
G
V
 
V
I
 
L
V
 
V
A
 
S
G
 
G
C
|
C
H
 
H
H
 
F
G
 
G
D
 
D
C
|
C
H
|
H
Y
 
Y
D
 
L
A
 
E
G
 
G
N
 
N
Y
 
Y
K
 
K
L
 
A
D
 
A
R
 
K
R
 
R
M
 
M
R
 
F
L
 
M
I
 
I
Y
 
K
K
 
N
L
 
L
A
 
L
E
 
R
D
 
N
L
 
I
G
 
G
I
 
L
G
 
D
R
 
D
E
 
R
R
 
R
I
 
F
Y
 
R
H
 
M
D
 
T
W
 
F
I
 
V
S
 
S
A
 
A
S
 
S
E
 
E
G
 
G
E
 
A
K
 
K
F
 
W
A
 
G
N
 
M
T
 
V
V
 
M
T
 
E
M
 
D
M
 
V
V
 
T
N
 
N
R
 
T
I
 
I
K
 
K
G
 
E
L
 
L
G
 
G
K
 
P
S
 
S
P
 
P
L
 
I
K
 
K
E
 
E

Query Sequence

>WP_013643971.1 NCBI__GCF_000191585.1:WP_013643971.1
MAEDDVKIVMFCCNWCSYGGADTAGTARMQYPPNVRVIRVMCSGRIEPQFVFKAFREGAD
GVIVAGCHHGDCHYDAGNYKLDRRMRLIYKLAEDLGIGRERIYHDWISASEGEKFANTVT
MMVNRIKGLGKSPLKEQLSVEA

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory