Comparing WP_013645374.1 NCBI__GCF_000191585.1:WP_013645374.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
1f3oA Crystal structure of mj0796 atp-binding cassette (see paper)
50% identity, 97% coverage: 6:221/223 of query aligns to 1:224/232 of 1f3oA
1l2tA Dimeric structure of mj0796, a bacterial abc transporter cassette (see paper)
50% identity, 97% coverage: 6:221/223 of query aligns to 1:224/230 of 1l2tA
5xu1B Structure of a non-canonical abc transporter from streptococcus pneumoniae r6 (see paper)
47% identity, 96% coverage: 6:220/223 of query aligns to 3:220/226 of 5xu1B
7mdyC Lolcde nucleotide-bound
41% identity, 96% coverage: 6:220/223 of query aligns to 2:220/226 of 7mdyC
P75957 Lipoprotein-releasing system ATP-binding protein LolD; EC 7.6.2.- from Escherichia coli (strain K12) (see paper)
41% identity, 96% coverage: 6:220/223 of query aligns to 5:223/233 of P75957
7arlD Lolcde in complex with lipoprotein and adp (see paper)
41% identity, 96% coverage: 6:220/223 of query aligns to 2:220/222 of 7arlD
7v8iD Lolcd(e171q)e with bound amppnp in nanodiscs (see paper)
40% identity, 96% coverage: 6:220/223 of query aligns to 4:222/229 of 7v8iD
5lilA Structure of aggregatibacter actinomycetemcomitans macb bound to atpys (p21) (see paper)
45% identity, 96% coverage: 6:220/223 of query aligns to 3:220/615 of 5lilA
5lj7A Structure of aggregatibacter actinomycetemcomitans macb bound to atp (p21) (see paper)
45% identity, 96% coverage: 6:220/223 of query aligns to 3:220/592 of 5lj7A
P75831 Macrolide export ATP-binding/permease protein MacB; EC 7.6.2.- from Escherichia coli (strain K12) (see paper)
42% identity, 96% coverage: 6:220/223 of query aligns to 4:221/648 of P75831
2pclA Crystal structure of abc transporter with complex (aq_297) from aquifex aeolicus vf5
44% identity, 96% coverage: 6:220/223 of query aligns to 3:216/223 of 2pclA
8g4cB Bceabs atpgs high res tm (see paper)
41% identity, 88% coverage: 24:220/223 of query aligns to 23:221/248 of 8g4cB
Sites not aligning to the query:
7tchB Bceab e169q variant atp-bound conformation (see paper)
41% identity, 88% coverage: 24:220/223 of query aligns to 22:220/245 of 7tchB
Sites not aligning to the query:
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
43% identity, 96% coverage: 6:220/223 of query aligns to 2:214/241 of 4u00A
5ws4A Crystal structure of tripartite-type abc transporter macb from acinetobacter baumannii (see paper)
40% identity, 96% coverage: 6:220/223 of query aligns to 4:221/650 of 5ws4A
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
43% identity, 91% coverage: 19:220/223 of query aligns to 12:214/240 of 4ymuJ
Sites not aligning to the query:
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
40% identity, 95% coverage: 6:216/223 of query aligns to 1:214/343 of P30750
Sites not aligning to the query:
P9WQK5 Uncharacterized ABC transporter ATP-binding protein Rv0073 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see paper)
38% identity, 93% coverage: 7:213/223 of query aligns to 4:213/330 of P9WQK5
3c4jA Abc protein artp in complex with atp-gamma-s
40% identity, 96% coverage: 6:218/223 of query aligns to 3:213/242 of 3c4jA
3c41J Abc protein artp in complex with amp-pnp/mg2+
40% identity, 96% coverage: 6:218/223 of query aligns to 3:213/242 of 3c41J
>WP_013645374.1 NCBI__GCF_000191585.1:WP_013645374.1
MNDNTIIKIKNLKKEYEDGSIIALNNVDLEIERGESVSIIGPSGSGKSTLLNMIGGLDKA
NEGQISVAGVNLMDNSDLSNFRSNEIGFVFQLHNLIPNLTVLENVQIPLLGTDIDDKKME
ERALKLLKSVNLENKVDQKPTKLSGGERQRVAIARALVNHPSIILADEPTGALDSETQEV
ILKLLLDIHKKENVTLIMVTHEPYVAKQADRSIYVLDGKIKPT
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory