Comparing WP_013645398.1 NCBI__GCF_000191585.1:WP_013645398.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
1f3oA Crystal structure of mj0796 atp-binding cassette (see paper)
50% identity, 97% coverage: 7:228/228 of query aligns to 1:230/232 of 1f3oA
1l2tA Dimeric structure of mj0796, a bacterial abc transporter cassette (see paper)
50% identity, 97% coverage: 7:228/228 of query aligns to 1:230/230 of 1l2tA
5xu1B Structure of a non-canonical abc transporter from streptococcus pneumoniae r6 (see paper)
48% identity, 96% coverage: 5:224/228 of query aligns to 1:223/226 of 5xu1B
5lj7A Structure of aggregatibacter actinomycetemcomitans macb bound to atp (p21) (see paper)
44% identity, 98% coverage: 6:228/228 of query aligns to 2:227/592 of 5lj7A
5lilA Structure of aggregatibacter actinomycetemcomitans macb bound to atpys (p21) (see paper)
44% identity, 98% coverage: 6:228/228 of query aligns to 2:227/615 of 5lilA
8g4cB Bceabs atpgs high res tm (see paper)
42% identity, 95% coverage: 7:223/228 of query aligns to 3:223/248 of 8g4cB
7tchB Bceab e169q variant atp-bound conformation (see paper)
41% identity, 95% coverage: 7:223/228 of query aligns to 2:222/245 of 7tchB
P75831 Macrolide export ATP-binding/permease protein MacB; EC 7.6.2.- from Escherichia coli (strain K12) (see paper)
42% identity, 94% coverage: 7:220/228 of query aligns to 4:220/648 of P75831
P75957 Lipoprotein-releasing system ATP-binding protein LolD; EC 7.6.2.- from Escherichia coli (strain K12) (see paper)
41% identity, 97% coverage: 7:227/228 of query aligns to 5:229/233 of P75957
7mdyC Lolcde nucleotide-bound
42% identity, 94% coverage: 7:220/228 of query aligns to 2:219/226 of 7mdyC
7arlD Lolcde in complex with lipoprotein and adp (see paper)
42% identity, 94% coverage: 7:220/228 of query aligns to 2:219/222 of 7arlD
7v8iD Lolcd(e171q)e with bound amppnp in nanodiscs (see paper)
40% identity, 97% coverage: 7:227/228 of query aligns to 4:228/229 of 7v8iD
2pclA Crystal structure of abc transporter with complex (aq_297) from aquifex aeolicus vf5
45% identity, 94% coverage: 7:221/228 of query aligns to 3:216/223 of 2pclA
5ws4A Crystal structure of tripartite-type abc transporter macb from acinetobacter baumannii (see paper)
40% identity, 97% coverage: 5:225/228 of query aligns to 2:225/650 of 5ws4A
6z4wA Ftse structure from streptococcus pneumoniae in complex with adp (space group p 1) (see paper)
39% identity, 96% coverage: 6:225/228 of query aligns to 2:221/230 of 6z4wA
A0A0H2ZM82 Cell division ATP-binding protein FtsE from Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) (see paper)
39% identity, 96% coverage: 6:225/228 of query aligns to 2:221/230 of A0A0H2ZM82
6z67B Ftse structure of streptococcus pneumoniae in complex with amppnp at 2.4 a resolution (see paper)
39% identity, 96% coverage: 6:225/228 of query aligns to 2:221/229 of 6z67B
3c4jA Abc protein artp in complex with atp-gamma-s
42% identity, 94% coverage: 6:219/228 of query aligns to 2:213/242 of 3c4jA
3c41J Abc protein artp in complex with amp-pnp/mg2+
42% identity, 94% coverage: 6:219/228 of query aligns to 2:213/242 of 3c41J
2olkA Abc protein artp in complex with adp-beta-s
42% identity, 94% coverage: 6:219/228 of query aligns to 2:213/242 of 2olkA
>WP_013645398.1 NCBI__GCF_000191585.1:WP_013645398.1
MNNTENVIEIKNLKKSYDNGNIKALNGIDLTVKKGEFISIMGPSGSGKSTLLNMIGALDT
ADEGMIKVAGIDLMKAKKLNLFRSQEIGFVFQMHNLIPNLSVIENVEIPMYETKANSSEM
RERALELLKSVNLEKKIDQKPTKLSGGERQRVAIARALVNHPSIILADEPTGSLDSKTGE
VILDLLKELHTKENVTLVMVTHEPYVGNMAERLVTVLDGKCKTDEKLR
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory