SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_013645480.1 NCBI__GCF_000191585.1:WP_013645480.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

2gtvX Nmr structure of monomeric chorismate mutase from methanococcus jannaschii (see paper)
35% identity, 89% coverage: 10:95/97 of query aligns to 5:98/104 of 2gtvX

query
sites
2gtvX
L
 
L
Q
 
A
E
 
E
S
 
I
R
|
R
T
 
K
K
 
K
I
 
I
D
 
D
E
 
E
M
 
I
D
 
D
E
 
N
L
 
K
L
 
I
I
 
L
D
 
K
-
 
A
-
 
R
-
 
W
-
 
P
-
 
W
-
 
A
-
 
E
-
 
K
L
 
L
V
 
I
E
 
A
K
 
E
R
|
R
T
 
N
L
 
S
L
 
L
A
 
A
R
 
K
D
 
D
I
x
V
V
 
A
N
 
E
A
 
I
K
|
K
L
 
N
V
 
Q
L
 
L
G
 
G
I
 
I
E
 
P
I
 
I
E
 
N
D
|
D
K
 
P
K
 
E
R
|
R
E
|
E
A
 
K
Y
 
Y
I
 
I
H
 
Y
E
 
D
K
 
R
I
 
I
K
 
R
Q
 
K
I
 
L
A
 
C
R
 
K
E
 
E
K
 
H
N
 
N
I
 
V
D
 
D
E
 
E
V
 
N
S
 
I
L
 
G
T
 
I
S
 
K
I
 
I
I
 
F
K
 
Q
I
 
R
L
 
L
T
 
I
D
 
E
M
 
H
S
x
N
K
 
K
K
 
A
E
 
L
Q
|
Q
N
 
K
K
 
Q
I
 
Y
L
 
L

Query Sequence

>WP_013645480.1 NCBI__GCF_000191585.1:WP_013645480.1
MDKEEASRLLQESRTKIDEMDELLIDLVEKRTLLARDIVNAKLVLGIEIEDKKREAYIHE
KIKQIAREKNIDEVSLTSIIKILTDMSKKEQNKILRR

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory