SitesBLAST

SitesBLAST – Find functional sites

SitesBLAST

Comparing WP_013645480.1 NCBI__GCF_000191585.1:WP_013645480.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

2gtvX Nmr structure of monomeric chorismate mutase from methanococcus jannaschii (see paper)
35% identity, 89% coverage: 10:95/97 of query aligns to 5:98/104 of 2gtvX

query
sites
2gtvX

L

L

Q

A

E

E

S

I

R
|
R

T

K

K

K

I

I

D

D

E

E

M

I

D

D

E

N

L

K

L

I

I

L

D

K

-

A

-

R

-

W

-

P

-

W

-

A

-

E

-

K

L

L

V

I

E

A

K

E

R
|
R

T

N

L

S

L

L

A

A

R

K

D

D

I
x
V

V

A

N

E

A

I

K
|
K

L

N

V

Q

L

L

G

G

I

I

E

P

I

I

E

N

D
|
D

K

P

K

E

R
|
R

E
|
E

A

K

Y

Y

I

I

H

Y

E

D

K

R

I

I

K

R

Q

K

I

L

A

C

R

K

E

E

K

H

N

N

I

V

D

D

E

E

V

N

S

I

L

G

T

I

S

K

I

I

I

F

K

Q

I

R

L

L

T

I

D

E

M

H

S
x
N

K

K

K

A

E

L

Q
|
Q

N

K

K

Q

I

Y

L

L

binding 8-hydroxy-2-oxa-bicyclo[3.3.1]non-6-ene-3,5-dicarboxylic acid: R9 (= R14), R34 (= R31), V41 (≠ I38), K45 (= K42), D54 (= D51), R57 (= R54), E58 (= E55), N90 (≠ S87), Q94 (= Q91)

Query Sequence

>WP_013645480.1 NCBI__GCF_000191585.1:WP_013645480.1
MDKEEASRLLQESRTKIDEMDELLIDLVEKRTLLARDIVNAKLVLGIEIEDKKREAYIHE
KIKQIAREKNIDEVSLTSIIKILTDMSKKEQNKILRR

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory