SitesBLAST
Comparing WP_013684189.1 NCBI__GCF_000194625.1:WP_013684189.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
3dc2A Crystal structure of serine bound d-3-phosphoglycerate dehydrogenase from mycobacterium tuberculosis (see paper)
40% identity, 96% coverage: 3:503/523 of query aligns to 4:506/526 of 3dc2A
- active site: N96 (= N96), R230 (= R230), D254 (= D254), E259 (= E259), H277 (= H278)
- binding serine: Y458 (≠ H455), D460 (= D457), R461 (≠ K458), P462 (= P459), G463 (= G460), A464 (≠ V461), L465 (≠ I462), L484 (≠ V481)
3ddnB Crystal structure of hydroxypyruvic acid phosphate bound d-3- phosphoglycerate dehydrogenase in mycobacterium tuberculosis (see paper)
40% identity, 96% coverage: 3:503/523 of query aligns to 5:505/525 of 3ddnB
O43175 D-3-phosphoglycerate dehydrogenase; 3-PGDH; 2-oxoglutarate reductase; Malate dehydrogenase; EC 1.1.1.95; EC 1.1.1.399; EC 1.1.1.37 from Homo sapiens (Human) (see 3 papers)
41% identity, 76% coverage: 2:400/523 of query aligns to 8:408/533 of O43175
- T78 (≠ V72) binding NAD(+)
- R135 (= R129) to W: in PHGDHD; results in a 2-fold decrease in enzyme activity with 3-phosphohydroxypyruvate, but no change in substrate affinity; dbSNP:rs267606949
- RI 155:156 (≠ KV 149:150) binding NAD(+)
- D175 (= D169) binding NAD(+)
- T207 (≠ V201) binding NAD(+)
- CAR 234:236 (= CAR 228:230) binding NAD(+)
- D260 (= D254) binding NAD(+)
- V261 (= V255) to M: in PHGDHD; results in a four-fold decrease in substrate affinity and a slight increase in maximal enzyme activity with 3-phosphohydroxypyruvate; dbSNP:rs267606947
- HLGA 283:286 (= HLGA 278:281) binding NAD(+)
- A373 (= A367) to T: in PHGDHD; results in almost undetectable enzyme activity with 3-phosphohydroxypyruvate; dbSNP:rs201553627
- G377 (= G371) to S: in PHGDHD; results in a 2-fold decrease in enzyme activity with 3-phosphohydroxypyruvate, but no change in substrate affinity; dbSNP:rs267606948
Sites not aligning to the query:
- 1 modified: Initiator methionine, Removed
- 2 modified: N-acetylalanine
- 425 V → M: in PHGDHD; results in almost undetectable enzyme activity with 3-phosphohydroxypyruvate; dbSNP:rs121907988
- 490 V → M: in PHGDHD; results in almost undetectable enzyme activity with 3-phosphohydroxypyruvate; dbSNP:rs121907987
1wwkA Crystal structure of phosphoglycerate dehydrogenase from pyrococcus horikoshii ot3
54% identity, 58% coverage: 1:304/523 of query aligns to 1:304/304 of 1wwkA
- active site: S96 (≠ N96), R230 (= R230), D254 (= D254), E259 (= E259), H278 (= H278)
- binding nicotinamide-adenine-dinucleotide: V100 (≠ T100), G146 (= G146), F147 (≠ L147), G148 (= G148), R149 (≠ K149), I150 (≠ V150), Y168 (= Y168), D169 (= D169), P170 (= P170), V201 (= V201), P202 (= P202), T207 (= T207), T228 (≠ C228), S229 (≠ A229), D254 (= D254), H278 (= H278), G280 (= G280)
6plfA Crystal structure of human phgdh complexed with compound 1 (see paper)
48% identity, 58% coverage: 2:304/523 of query aligns to 4:305/305 of 6plfA
6plgA Crystal structure of human phgdh complexed with compound 15 (see paper)
47% identity, 58% coverage: 2:303/523 of query aligns to 3:303/303 of 6plgA
7dkmA Phgdh covalently linked to oridonin (see paper)
47% identity, 58% coverage: 2:303/523 of query aligns to 4:304/306 of 7dkmA
- binding nicotinamide-adenine-dinucleotide: T74 (≠ V72), A102 (≠ T100), G148 (= G146), R151 (≠ K149), I152 (≠ V150), Y170 (= Y168), D171 (= D169), P172 (= P170), I173 (≠ Y171), H202 (= H200), T203 (≠ V201), P204 (= P202), T209 (= T207), C230 (= C228), A231 (= A229), R232 (= R230), H279 (= H278), G281 (= G280)
- binding (1beta,6beta,7beta,8alpha,9beta,10alpha,13alpha,14R,16beta)-1,6,7,14-tetrahydroxy-7,20-epoxykauran-15-one: C14 (≠ E12), K17 (≠ Q15), I18 (≠ R16), E293 (≠ M292)
6rj5A Crystal structure of phgdh in complex with compound 39 (see paper)
47% identity, 57% coverage: 2:301/523 of query aligns to 3:301/301 of 6rj5A
7ewhA Crystal structure of human phgdh in complex with homoharringtonine (see paper)
47% identity, 57% coverage: 2:301/523 of query aligns to 3:301/302 of 7ewhA
- binding (3beta)-O~3~-[(2R)-2,6-dihydroxy-2-(2-methoxy-2-oxoethyl)-6-methylheptanoyl]cephalotaxine: L146 (≠ I145), G147 (= G146), L148 (= L147), G149 (= G148), R150 (≠ K149), I151 (≠ V150), G152 (= G151), D170 (= D169), H201 (= H200), T202 (≠ V201), P203 (= P202)
6rihA Crystal structure of phgdh in complex with compound 9 (see paper)
47% identity, 57% coverage: 2:301/523 of query aligns to 3:301/302 of 6rihA
6rj2A Crystal structure of phgdh in complex with compound 40 (see paper)
47% identity, 57% coverage: 3:301/523 of query aligns to 1:298/299 of 6rj2A
- binding ~{N}-[(1~{R})-1-[4-(ethanoylsulfamoyl)phenyl]ethyl]-2-methyl-5-phenyl-pyrazole-3-carboxamide: G146 (= G148), I148 (≠ V150), Y166 (= Y168), D167 (= D169), P168 (= P170), I169 (≠ Y171), I170 (= I172), H198 (= H200), T199 (≠ V201), L208 (= L210), R228 (= R230)
6cwaA Crystal structure phgdh in complex with nadh and 3-phosphoglycerate at 1.77 a resolution (see paper)
47% identity, 57% coverage: 2:300/523 of query aligns to 2:299/299 of 6cwaA
- binding 1,4-dihydronicotinamide adenine dinucleotide: N96 (= N96), A100 (≠ T100), R149 (≠ K149), I150 (≠ V150), Y168 (= Y168), D169 (= D169), P170 (= P170), I171 (≠ Y171), H200 (= H200), T201 (≠ V201), P202 (= P202), T207 (= T207), C228 (= C228), A229 (= A229), R230 (= R230), H277 (= H278), G279 (= G280)
6rj3A Crystal structure of phgdh in complex with compound 15 (see paper)
48% identity, 56% coverage: 2:295/523 of query aligns to 2:294/297 of 6rj3A
6plfB Crystal structure of human phgdh complexed with compound 1 (see paper)
45% identity, 57% coverage: 2:301/523 of query aligns to 2:292/292 of 6plfB
- binding 4-{(1S)-1-[(5-chloro-6-{[(5S)-2-oxo-1,3-oxazolidin-5-yl]methoxy}-1H-indole-2-carbonyl)amino]-2-hydroxyethyl}benzoic acid: R141 (≠ K149), Y160 (= Y168), D161 (= D169), P162 (= P170), I164 (= I172), L179 (= L187), T193 (≠ V201), P194 (= P202), S198 (≠ E206), L202 (= L210)
2eklA Structure of st1218 protein from sulfolobus tokodaii
43% identity, 58% coverage: 1:305/523 of query aligns to 5:309/312 of 2eklA
- active site: S100 (≠ N96), R232 (= R230), D256 (= D254), E261 (= E259), H282 (= H278)
- binding nicotinamide-adenine-dinucleotide: I76 (≠ V72), S100 (≠ N96), G148 (= G146), G150 (= G148), R151 (≠ K149), I152 (≠ V150), Y170 (= Y168), D171 (= D169), I172 (≠ P170), L173 (≠ Y171), H202 (= H200), V203 (= V201), T204 (≠ P202), I212 (≠ L210), T230 (≠ C228), S231 (≠ A229), D256 (= D254), G284 (= G280)
5aovA Ternary crystal structure of pyrococcus furiosus glyoxylate hydroxypyruvate reductase in presence of glyoxylate (see paper)
42% identity, 58% coverage: 2:304/523 of query aligns to 4:314/334 of 5aovA
- active site: L100 (≠ N96), R241 (= R230), D265 (= D254), E270 (= E259), H288 (= H278)
- binding glyoxylic acid: M52 (≠ R48), L53 (≠ S49), L53 (≠ S49), Y74 (≠ A70), A75 (≠ G71), V76 (= V72), G77 (= G73), R241 (= R230), H288 (= H278)
- binding nadp nicotinamide-adenine-dinucleotide phosphate: V76 (= V72), T104 (= T100), F158 (≠ L147), G159 (= G148), R160 (≠ K149), I161 (≠ V150), S180 (≠ D169), R181 (≠ P170), A211 (≠ H200), V212 (= V201), P213 (= P202), T218 (= T207), I239 (≠ C228), A240 (= A229), R241 (= R230), H288 (= H278), G290 (= G280)
7cvpA The crystal structure of human phgdh from biortus.
44% identity, 50% coverage: 41:300/523 of query aligns to 21:254/254 of 7cvpA
- binding nicotinamide-adenine-dinucleotide: G101 (= G146), G103 (= G148), R104 (≠ K149), I105 (≠ V150), Y123 (= Y168), D124 (= D169), P125 (= P170), I126 (≠ Y171), H155 (= H200), T156 (≠ V201), P157 (= P202), T162 (= T207), C183 (= C228), A184 (= A229), R185 (= R230), H232 (= H278), G234 (= G280)
P87228 Putative D-3-phosphoglycerate dehydrogenase; 3-PGDH; 2-oxoglutarate reductase; EC 1.1.1.95; EC 1.1.1.399 from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (see paper)
37% identity, 61% coverage: 1:319/523 of query aligns to 56:385/466 of P87228
- S87 (= S31) modified: Phosphoserine
- S258 (≠ T204) modified: Phosphoserine
5ofwA Crystal structure of human 3-phosphoglycerate dehydrogenase in complex with 3-chloro-4-fluorobenzamide (see paper)
50% identity, 37% coverage: 95:287/523 of query aligns to 2:193/195 of 5ofwA
- active site: N3 (= N96), R137 (= R230), D161 (= D254), E166 (= E259), H184 (= H278)
- binding 3-chloranyl-4-fluoranyl-benzamide: G53 (= G146), Y75 (= Y168), P77 (= P170), T108 (≠ V201), S113 (≠ E206), T114 (= T207), L117 (= L210)
5ofvA Crystal structure of human 3-phosphoglycerate dehydrogenase in complex with 5-fluoro-2-methylbenzoic acid (see paper)
50% identity, 37% coverage: 95:287/523 of query aligns to 2:193/195 of 5ofvA
Query Sequence
>WP_013684189.1 NCBI__GCF_000194625.1:WP_013684189.1
MKVLVTDPIPDEAIQRMRSEGLEVDVRTGISEDELVSIIPEYEALVVRSGTKVTRRVIEA
AKKLRIIGRAGVGVDNIDVQAATQHGIIVVNAPGGNSVSTAEHTLALILAVARRIPQADR
SVKEGRWERKKFIGMELRGKTIGVIGLGKVGFEVAKRAKALEMNVLAYDPYISEERAKEI
GAKLVDLDELLKSSDIVTIHVPKTKETEGLISREKIAIMKDGAYLINCARGGLVDEKALY
DALKEGKLAGAALDVYEKEPPDANNPLFTLENVVTTPHLGASTKEAQISVGMTVANEIIN
MAKGLPVRNAVNLPSMDAREYEYIMPYLKLAEKMGRLAASRLRAVRSVRITFRGRLAEVK
TEFVTRALLKGLLEGIVSNINLVSALPVARERGIAIEETRGDVESYESLLEAEISNGERS
ISIAGTCFGSEYRIVRIDRYKVDFVPEGHYVISLHEDKPGVIGRVGTLFGKHNINIAGML
VGRYGGRGGVQLMLLLVDDPPSDEVLDEMVKLDGIIDAVYVHL
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SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory