SitesBLAST
Comparing WP_013721158.1 NCBI__GCF_000204645.1:WP_013721158.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 20 (the maximum) hits to proteins with known functional sites (download)
Q6BF17 D-galactonate dehydratase; GalD; EC 4.2.1.6 from Escherichia coli (strain K12)
32% identity, 93% coverage: 1:359/387 of query aligns to 1:352/382 of Q6BF17
- H185 (= H189) mutation H->N,Q: Loss of activity.
- H285 (= H289) mutation to N: Loss of activity.
- E310 (= E314) mutation to Q: Loss of activity.
3rraB Crystal structure of enolase prk14017 (target efi-500653) from ralstonia pickettii 12j with magnesium bound
33% identity, 90% coverage: 13:359/387 of query aligns to 15:347/379 of 3rraB
- active site: I35 (≠ T33), R38 (≠ H36), Y118 (= Y115), K145 (≠ H143), N147 (= N145), E151 (≠ Q154), D184 (≠ E187), H186 (= H189), E210 (= E213), G235 (= G238), E236 (= E239), R237 (= R240), Q257 (≠ R260), D259 (= D262), H286 (= H289), P288 (= P291), E311 (= E314)
- binding magnesium ion: D184 (≠ E187), E210 (= E213), E236 (= E239)
4e6mA Crystal structure of putative dehydratase protein from salmonella enterica subsp. Enterica serovar typhimurium (salmonella typhimurium)
34% identity, 89% coverage: 15:359/387 of query aligns to 27:387/401 of 4e6mA
- active site: L45 (vs. gap), G48 (= G35), K169 (≠ H143), D171 (≠ N145), I175 (≠ L148), E223 (= E187), H225 (= H189), E249 (= E213), G274 (= G238), E275 (= E239), R276 (= R240), Q296 (≠ R260), D298 (= D262), H325 (= H289), C327 (≠ P291), E350 (= E314), A355 (≠ G318)
- binding magnesium ion: E223 (= E187), E249 (= E213), E275 (= E239)
4e4fB Crystal structure of enolase pc1_0802 (target efi-502240) from pectobacterium carotovorum subsp. Carotovorum pc1
33% identity, 90% coverage: 13:359/387 of query aligns to 17:353/381 of 4e4fB
- active site: L37 (≠ T33), R40 (vs. gap), R148 (≠ G142), Q150 (≠ L144), D189 (≠ E187), H191 (= H189), E215 (= E213), G240 (= G238), E241 (= E239), V242 (≠ R240), R262 (= R260), T264 (≠ D262), H291 (= H289), P293 (= P291), E318 (= E314)
- binding magnesium ion: D189 (≠ E187), E215 (= E213), E241 (= E239)
Sites not aligning to the query:
2o56A Crystal structure of a member of the enolase superfamily from salmonella typhimurium
30% identity, 96% coverage: 1:371/387 of query aligns to 2:390/392 of 2o56A
- active site: K165 (≠ Y156), D167 (≠ K158), M171 (vs. gap), L186 (vs. gap), E214 (= E187), H216 (= H189), E240 (= E213), G265 (= G238), E266 (= E239), Q287 (≠ R260), D289 (= D262), H316 (= H289), E341 (= E314), A346 (≠ G322)
- binding magnesium ion: E214 (= E187), E240 (= E213), E266 (= E239)
3gy1B Crystal structure of putative mandelate racemase/muconate lactonizing protein from clostridium beijerinckii ncimb 8052
31% identity, 95% coverage: 13:379/387 of query aligns to 21:370/388 of 3gy1B
- active site: R152 (≠ N145), Q154 (≠ F147), D191 (≠ E187), H193 (= H189), E217 (= E213), G242 (= G238), E243 (= E239), R264 (= R260), H266 (≠ D262), H293 (= H289), E320 (= E314)
- binding magnesium ion: D191 (≠ E187), E217 (= E213), E243 (= E239)
B0T0B1 D-mannonate dehydratase Caul1427; ManD; EC 4.2.1.8 from Caulobacter sp. (strain K31) (see paper)
33% identity, 78% coverage: 13:315/387 of query aligns to 17:341/403 of B0T0B1
- D211 (≠ E187) binding Mg(2+)
- E237 (= E213) binding Mg(2+)
- E263 (= E239) binding Mg(2+)
3p93C Crystal structure of d-mannonate dehydratase from chromohalobacter salexigens complexed with mg,d-mannonate and 2-keto-3-deoxy-d- gluconate
33% identity, 78% coverage: 13:315/387 of query aligns to 16:322/384 of 3p93C
- active site: H122 (= H117), R147 (vs. gap), Q149 (vs. gap), D192 (≠ E187), H194 (= H189), E218 (= E213), G243 (= G238), E244 (= E239), R265 (= R260), P267 (≠ D262), H294 (= H289), G295 (≠ N290), E321 (= E314)
- binding 2-keto-3-deoxygluconate: N37 (≠ W34), D192 (≠ E187), H194 (= H189), E244 (= E239), H294 (= H289), P296 (= P291), D298 (vs. gap), E321 (= E314)
- binding magnesium ion: D192 (≠ E187), E218 (= E213), E244 (= E239)
Sites not aligning to the query:
3p93A Crystal structure of d-mannonate dehydratase from chromohalobacter salexigens complexed with mg,d-mannonate and 2-keto-3-deoxy-d- gluconate
33% identity, 78% coverage: 13:315/387 of query aligns to 16:322/384 of 3p93A
- active site: H122 (= H117), R147 (vs. gap), Q149 (vs. gap), D192 (≠ E187), H194 (= H189), E218 (= E213), G243 (= G238), E244 (= E239), R265 (= R260), P267 (≠ D262), H294 (= H289), G295 (≠ N290), E321 (= E314)
- binding d-mannonic acid: N37 (≠ W34), D192 (≠ E187), H194 (= H189), E244 (= E239), H294 (= H289), P296 (= P291), D298 (vs. gap), E321 (= E314)
- binding magnesium ion: D192 (≠ E187), E218 (= E213), E244 (= E239)
Sites not aligning to the query:
4fi4A Crystal structure of mannonate dehydratase prk15072 (target efi- 502214) from caulobacter sp. K31
33% identity, 78% coverage: 13:315/387 of query aligns to 21:345/407 of 4fi4A
- active site: L41 (≠ T33), R44 (≠ H36), H127 (= H117), R152 (vs. gap), Q154 (vs. gap), Y164 (≠ F147), S187 (≠ T159), D215 (≠ E187), H217 (= H189), E241 (= E213), G266 (= G238), E267 (= E239), I268 (≠ R240), R288 (= R260), T290 (≠ D262), C316 (≠ P288), H317 (= H289), G318 (vs. gap), A319 (vs. gap), E344 (= E314)
- binding magnesium ion: D215 (≠ E187), E241 (= E213), E267 (= E239)
Sites not aligning to the query:
3rgtA Crystal structure of d-mannonate dehydratase from chromohalobacter salexigens complexed with d-arabinohydroxamate
32% identity, 78% coverage: 13:315/387 of query aligns to 16:321/383 of 3rgtA
- active site: H122 (= H117), R147 (≠ G142), Q149 (≠ D149), D191 (≠ E187), H193 (= H189), E217 (= E213), G242 (= G238), E243 (= E239), R264 (= R260), P266 (≠ D262), H293 (= H289), G294 (≠ N290), E320 (= E314)
- binding cobalt (ii) ion: D191 (≠ E187), E217 (= E213), E243 (= E239)
- binding (2S,3R,4R)-2,3,4,5-tetrahydroxy-N-oxo-pentanamide: N37 (≠ W34), D191 (≠ E187), H193 (= H189), E243 (= E239), H293 (= H289), P295 (= P291), D297 (vs. gap), E320 (= E314)
Sites not aligning to the query:
A6M2W4 D-galactonate dehydratase family member Cbei_4837 from Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) (Clostridium acetobutylicum) (see paper)
30% identity, 95% coverage: 13:379/387 of query aligns to 20:384/399 of A6M2W4
- D205 (≠ E187) binding Mg(2+)
- E231 (= E213) binding Mg(2+)
- E257 (= E239) binding Mg(2+)
4kwsA Crystal structure of d-mannonate dehydratase from chromohalobacter salexigens complexed with mg and glycerol
32% identity, 78% coverage: 13:315/387 of query aligns to 16:335/397 of 4kwsA
- active site: H122 (= H117), R147 (≠ G142), Q149 (≠ L144), Y159 (vs. gap), D205 (≠ E187), H207 (= H189), E231 (= E213), G256 (= G238), E257 (= E239), R278 (= R260), P280 (≠ D262), H307 (= H289), G308 (≠ N290), E334 (= E314)
- binding magnesium ion: D205 (≠ E187), E231 (= E213), E257 (= E239)
Sites not aligning to the query:
3qkeA Crystal structure of d-mannonate dehydratase from chromohalobacter salexigens complexed with mg and d-gluconate
32% identity, 78% coverage: 13:315/387 of query aligns to 16:335/397 of 3qkeA
- active site: H122 (= H117), R147 (≠ G142), Q149 (≠ L144), Y159 (vs. gap), D205 (≠ E187), H207 (= H189), E231 (= E213), G256 (= G238), E257 (= E239), R278 (= R260), P280 (≠ D262), H307 (= H289), G308 (≠ N290), E334 (= E314)
- binding D-gluconic acid: N37 (≠ W34), Y159 (vs. gap), D205 (≠ E187), H207 (= H189), E257 (= E239), H307 (= H289), P309 (= P291), D311 (vs. gap), E334 (= E314)
- binding magnesium ion: D205 (≠ E187), E231 (= E213), E257 (= E239)
Sites not aligning to the query:
Q1QT89 D-galactonate dehydratase family member ManD; D-gluconate dehydratase; D-mannonate dehydratase; EC 4.2.1.-; EC 4.2.1.39; EC 4.2.1.8 from Chromohalobacter salexigens (strain ATCC BAA-138 / DSM 3043 / CIP 106854 / NCIMB 13768 / 1H11) (see paper)
32% identity, 78% coverage: 13:315/387 of query aligns to 16:341/403 of Q1QT89
- D211 (≠ E187) binding Mg(2+)
- E237 (= E213) binding Mg(2+)
- E263 (= E239) binding Mg(2+)
- H313 (= H289) mutation to N: Abolishes activity with D-gluconate and D-mannonate.; mutation to Q: Abolishes activity with D-gluconate. No effect on activity with D-mannonate.
- P315 (= P291) mutation to A: Strongly increases activity with D-mannonate. Slightly decreases activity with D-gluconate.
3rcyF Crystal structure of mandelate racemase/muconate lactonizing enzyme- like protein from roseovarius sp. Tm1035
31% identity, 89% coverage: 14:359/387 of query aligns to 23:369/397 of 3rcyF
- active site: K165 (≠ F147), D167 (= D149), R175 (≠ F157), G208 (≠ E187), H210 (= H189), E234 (= E213), G259 (= G238), E260 (= E239), Q281 (≠ R260), A283 (≠ D262), H310 (= H289), A313 (≠ L292), L332 (≠ A311), E335 (= E314)
- binding magnesium ion: E234 (= E213), E260 (= E239)
- binding alpha-D-ribofuranose: R85 (≠ N78), P86 (vs. gap), P239 (= P218), A266 (≠ Y245), E267 (= E246)
Q1NAJ2 D-mannonate dehydratase; ManD; EC 4.2.1.8 from Sphingomonas sp. (strain SKA58) (see paper)
32% identity, 78% coverage: 13:315/387 of query aligns to 17:341/403 of Q1NAJ2
- D211 (≠ E187) binding Mg(2+)
- E237 (= E213) binding Mg(2+)
- E263 (= E239) binding Mg(2+)
3thuA Crystal structure of an enolase from sphingomonas sp. Ska58 (efi target efi-501683) with bound mg
32% identity, 78% coverage: 13:315/387 of query aligns to 19:343/405 of 3thuA
- active site: L39 (≠ T33), E43 (vs. gap), W79 (≠ F72), G124 (= G116), R150 (vs. gap), Q152 (vs. gap), Y162 (≠ F147), D213 (≠ E187), H215 (= H189), E239 (= E213), G264 (= G238), E265 (= E239), R286 (= R260), T288 (≠ D262), H315 (= H289), E342 (= E314)
- binding magnesium ion: D213 (≠ E187), E239 (= E213), E265 (= E239)
Sites not aligning to the query:
4ihcB Crystal structure of probable mannonate dehydratase dd703_0947 (target efi-502222) from dickeya dadantii ech703
31% identity, 88% coverage: 20:359/387 of query aligns to 26:365/395 of 4ihcB
- active site: F39 (≠ T33), R42 (≠ H36), R150 (vs. gap), Q152 (vs. gap), D201 (≠ E187), H203 (= H189), E227 (= E213), G252 (= G238), E253 (= E239), L254 (≠ R240), R274 (= R260), H276 (≠ D262), H303 (= H289), P305 (= P291), E330 (= E314)
- binding magnesium ion: D201 (≠ E187), E227 (= E213), E253 (= E239)
Sites not aligning to the query:
3tjiA Crystal structure of an enolase from enterobacter sp. 638 (efi target efi-501662) with bound mg
29% identity, 94% coverage: 17:379/387 of query aligns to 24:384/399 of 3tjiA
- active site: R151 (vs. gap), Q153 (vs. gap), D205 (≠ E187), H207 (= H189), E231 (= E213), G256 (= G238), E257 (= E239), R278 (= R260), H280 (≠ D262), H307 (= H289), E334 (= E314), S339 (≠ F319)
- binding magnesium ion: D205 (≠ E187), E231 (= E213), E257 (= E239)
Sites not aligning to the query:
Query Sequence
>WP_013721158.1 NCBI__GCF_000204645.1:WP_013721158.1
MKIRKVEPLHVGQFMFVRITTDDGTVGYGEAGTWGHIEAAGVCIRRFAEYLEGKDAFAIE
HHWNVMHRFSYFTGLAENAAISAIDIALWDIKGKALNVPIYELLGGAARTKARIYGHIYE
NSIEKMLVECQAKMEAGFNAFGHLNPFLDEGNDQVYFKTHIKKMRDAIDNTRRMREVVGD
RVDLLIEIHRRLTPAEAIVFARGIEDTHPMFIEDPIRPEGPDGMARVAEKIGIPIATGER
FANLYEFQTLMARGGVEYARVDLCLCGGITGAKKVAALAEAHHVQVVPHNPLSPIGLAAC
LQLDAAIPNFAIQEYATGFEAGIFESRPEHLGSDIVDQVPLPDAGFVDIPTGPGLGMNLL
PDAQKIRPPLVKPISMRPHFDGFVVDQ
Or try a new SitesBLAST search
SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory