SitesBLAST
Comparing WP_013722403.1 NCBI__GCF_000204645.1:WP_013722403.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
8rwkA Cryoem structure of the central ald4 filament determined by filamentid (see paper)
40% identity, 94% coverage: 23:476/482 of query aligns to 42:487/495 of 8rwkA
3jz4A Crystal structure of e. Coli NADP dependent enzyme (see paper)
37% identity, 99% coverage: 1:476/482 of query aligns to 7:475/481 of 3jz4A
- active site: N156 (= N149), K179 (= K172), E254 (= E247), C288 (= C281), E385 (= E384), E462 (= E463)
- binding nadp nicotinamide-adenine-dinucleotide phosphate: P154 (= P147), W155 (= W148), K179 (= K172), A181 (= A174), S182 (≠ D175), A212 (≠ G205), G216 (= G209), G232 (= G225), S233 (= S226), I236 (≠ V229), C288 (= C281), K338 (≠ Q331), E385 (= E384), F387 (= F386)
P25526 Succinate-semialdehyde dehydrogenase [NADP(+)] GabD; SSDH; Glutarate-semialdehyde dehydrogenase; EC 1.2.1.79; EC 1.2.1.- from Escherichia coli (strain K12) (see paper)
37% identity, 99% coverage: 1:476/482 of query aligns to 8:476/482 of P25526
2d4eC Crystal structure of the hpcc from thermus thermophilus hb8
39% identity, 98% coverage: 6:477/482 of query aligns to 29:500/515 of 2d4eC
- active site: N173 (= N149), K196 (= K172), E271 (= E247), C305 (= C281), E409 (= E384), E486 (= E463)
- binding nicotinamide-adenine-dinucleotide: I169 (= I145), T170 (= T146), P171 (= P147), W172 (= W148), K196 (= K172), A198 (= A174), G229 (= G205), G233 (= G209), A234 (≠ E210), T248 (= T224), G249 (= G225), E250 (≠ S226), T253 (≠ V229), E271 (= E247), L272 (≠ M248), C305 (= C281), E409 (= E384), F411 (= F386), F475 (= F451)
4o6rA Crystal structure of a putative aldehyde dehydrogenase from burkholderia cenocepacia
39% identity, 95% coverage: 23:479/482 of query aligns to 25:476/489 of 4o6rA
- active site: N150 (= N149), K173 (= K172), E248 (= E247), C282 (= C281), E383 (= E384), E460 (= E463)
- binding adenosine monophosphate: I146 (= I145), V147 (≠ T146), K173 (= K172), G206 (= G205), G210 (= G209), Q211 (≠ E210), F224 (= F223), G226 (= G225), S227 (= S226), T230 (≠ V229), R233 (≠ G232)
4go2A Crystal structure of thE C-terminal domain of 10'formyltetrahydrofolate dehydrogenase in complex with thio-NADP (see paper)
37% identity, 98% coverage: 7:477/482 of query aligns to 21:493/498 of 4go2A
- active site: N170 (= N149), K193 (= K172), E269 (= E247), C303 (= C281), E400 (= E384), D479 (≠ E463)
- binding 7-thionicotinamide-adenine-dinucleotide phosphate: V166 (≠ I145), I167 (≠ T146), P168 (= P147), W169 (= W148), K193 (= K172), A195 (= A174), Q196 (≠ D175), S225 (≠ R204), G226 (= G205), G230 (= G209), Q231 (≠ E210), F244 (= F223), G246 (= G225), S247 (= S226), V250 (= V229), I254 (= I233), E269 (= E247), G271 (= G249), C303 (= C281), E400 (= E384), F402 (= F386)
2o2rA Crystal structure of thE C-terminal domain of rat 10'formyltetrahydrofolate dehydrogenase in complex with NADPH (see paper)
37% identity, 98% coverage: 7:477/482 of query aligns to 21:493/498 of 2o2rA
- active site: N170 (= N149), K193 (= K172), E269 (= E247), C303 (= C281), E400 (= E384), D479 (≠ E463)
- binding nadph dihydro-nicotinamide-adenine-dinucleotide phosphate: V166 (≠ I145), I167 (≠ T146), W169 (= W148), K193 (= K172), A195 (= A174), Q196 (≠ D175), S225 (≠ R204), G226 (= G205), G230 (= G209), Q231 (≠ E210), F244 (= F223), S247 (= S226), V250 (= V229), I254 (= I233)
7rluA Structure of aldh1l1 (10-formyltetrahydrofolate dehydrogenase) in complex with NADP (see paper)
37% identity, 98% coverage: 4:477/482 of query aligns to 103:578/583 of 7rluA
- binding nadp nicotinamide-adenine-dinucleotide phosphate: K278 (= K172), S310 (≠ R204), G311 (= G205), G315 (= G209), G331 (= G225), S332 (= S226), V335 (= V229)
- binding 4'-phosphopantetheine: K201 (≠ G99), F382 (≠ Y275), N387 (≠ R280), C388 (= C281), N545 (≠ T442)
4neaA 1.90 angstrom resolution crystal structure of betaine aldehyde dehydrogenase (betb) from staphylococcus aureus in complex with NAD+ and bme-free cys289 (see paper)
35% identity, 98% coverage: 8:480/482 of query aligns to 22:493/505 of 4neaA
- active site: N166 (= N149), K189 (= K172), E264 (= E247), C298 (= C281), E399 (= E384), E476 (= E463)
- binding nicotinamide-adenine-dinucleotide: P164 (= P147), K189 (= K172), E192 (≠ D175), G222 (= G205), G226 (= G209), G242 (= G225), G243 (≠ S226), T246 (≠ V229), H249 (≠ G232), I250 (= I233), C298 (= C281), E399 (= E384), F401 (= F386)
7radA Crystal structure analysis of aldh1b1
38% identity, 98% coverage: 7:477/482 of query aligns to 16:483/493 of 7radA
- binding nicotinamide-adenine-dinucleotide: I158 (= I145), I159 (≠ T146), P160 (= P147), W161 (= W148), N162 (= N149), M167 (≠ I154), K185 (= K172), E188 (≠ D175), G218 (= G205), G222 (= G209), A223 (≠ E210), T237 (= T224), G238 (= G225), S239 (= S226), V242 (= V229), E261 (= E247), L262 (≠ M248), C295 (= C281), E392 (= E384), F394 (= F386)
- binding 3-(2-methoxyphenyl)-1-(4-phenylphenyl)-6,7,8,9-tetrahydro-5~{H}-imidazo[1,2-a][1,3]diazepine: L113 (vs. gap), E117 (≠ R103), F163 (= F150), E285 (≠ Q271), F289 (≠ Y275), N450 (≠ T442), V452 (= V445)
7mjdA Crystal structure analysis of aldh1b1
38% identity, 98% coverage: 7:477/482 of query aligns to 16:483/493 of 7mjdA
- binding nicotinamide-adenine-dinucleotide: I158 (= I145), I159 (≠ T146), P160 (= P147), W161 (= W148), N162 (= N149), M167 (≠ I154), K185 (= K172), E188 (≠ D175), G218 (= G205), G222 (= G209), F236 (= F223), T237 (= T224), G238 (= G225), S239 (= S226), V242 (= V229), E261 (= E247), L262 (≠ M248), C295 (= C281), E392 (= E384), F394 (= F386)
- binding 8-(2-methoxyphenyl)-10-(4-phenylphenyl)-1$l^{4},8-diazabicyclo[5.3.0]deca-1(7),9-diene: E117 (≠ R103), E285 (≠ Q271), F289 (≠ Y275), N450 (≠ T442), V452 (= V445)
7mjcA Crystal structure analysis of aldh1b1
38% identity, 98% coverage: 7:477/482 of query aligns to 16:483/493 of 7mjcA
- binding nicotinamide-adenine-dinucleotide: I158 (= I145), I159 (≠ T146), P160 (= P147), W161 (= W148), N162 (= N149), K185 (= K172), E188 (≠ D175), G218 (= G205), G222 (= G209), T237 (= T224), G238 (= G225), S239 (= S226), V242 (= V229), E261 (= E247), L262 (≠ M248), C295 (= C281), E392 (= E384), F394 (= F386)
P28037 Cytosolic 10-formyltetrahydrofolate dehydrogenase; 10-FTHFDH; FDH; Aldehyde dehydrogenase family 1 member L1; FBP-CI; EC 1.5.1.6 from Rattus norvegicus (Rat) (see 5 papers)
37% identity, 98% coverage: 4:477/482 of query aligns to 422:897/902 of P28037
- IPW 571:573 (≠ TPW 146:148) binding NADP(+)
- KPAQ 597:600 (≠ KPAD 172:175) binding NADP(+)
- GSLVGQ 630:635 (≠ GRVIGE 205:210) binding NADP(+)
- GS 650:651 (= GS 225:226) binding NADP(+)
- E673 (= E247) mutation to A: Loss of aldehyde dehydrogenase activity.
- EL 673:674 (≠ EM 247:248) binding NADP(+)
- C707 (= C281) mutation to A: Loss of formyltetrahydrofolate dehydrogenase activity. No effect on formyltetrahydrofolate hydrolase activity. No effect on NADP binding. No effect on homotetramerization.
- K757 (≠ Q331) binding NADP(+)
- ESF 804:806 (≠ EVF 384:386) binding NADP(+)
Sites not aligning to the query:
- 142 Essential for catalytic activity; D→A: Loss of formyltetrahydrofolate dehydrogenase activity. Loss of formyltetrahydrofolate hydrolase activity. No effect on aldehyde dehydrogenase activity.
- 354 modified: O-(pantetheine 4'-phosphoryl)serine; S→A: Loss of phosphopantetheinylation. Loss of formyltetrahydrofolate dehydrogenase activity. No effect on hydrolase and aldehyde dehydrogenase activities in vitro.
Q9H2A2 2-aminomuconic semialdehyde dehydrogenase; Aldehyde dehydrogenase 12; Aldehyde dehydrogenase family 8 member A1; EC 1.2.1.32 from Homo sapiens (Human) (see paper)
35% identity, 98% coverage: 5:477/482 of query aligns to 11:482/487 of Q9H2A2
- R109 (= R103) mutation to A: About 65-fold loss of catalytic efficiency.
- N155 (= N149) mutation to A: Complete loss of activity.
- R451 (≠ G444) mutation to A: Complete loss of activity.
5gtlA NADPH complex structure of aldehyde dehydrogenase from bacillus cereus
37% identity, 96% coverage: 15:479/482 of query aligns to 30:487/491 of 5gtlA
- active site: N165 (= N149), K188 (= K172), E263 (= E247), C297 (= C281), E394 (= E384), E471 (= E463)
- binding nadph dihydro-nicotinamide-adenine-dinucleotide phosphate: I161 (= I145), P163 (= P147), K188 (= K172), A190 (= A174), E191 (≠ D175), Q192 (≠ L176), G221 (= G205), G225 (= G209), G241 (= G225), S242 (= S226), T245 (≠ V229), L264 (≠ M248), C297 (= C281), E394 (= E384), F396 (= F386)
5gtkA NAD+ complex structure of aldehyde dehydrogenase from bacillus cereus
37% identity, 96% coverage: 15:479/482 of query aligns to 30:487/491 of 5gtkA
- active site: N165 (= N149), K188 (= K172), E263 (= E247), C297 (= C281), E394 (= E384), E471 (= E463)
- binding nicotinamide-adenine-dinucleotide: I161 (= I145), I162 (≠ T146), P163 (= P147), W164 (= W148), K188 (= K172), E191 (≠ D175), G221 (= G205), G225 (= G209), A226 (≠ E210), F239 (= F223), G241 (= G225), S242 (= S226), T245 (≠ V229), Y248 (≠ G232), L264 (≠ M248), C297 (= C281), Q344 (= Q328), R347 (≠ Q331), E394 (= E384), F396 (= F386)
4cazA Crystal structure of betaine aldehyde dehydrogenase from pseudomonas aeruginosa in complex with nadh
36% identity, 98% coverage: 8:477/482 of query aligns to 10:477/489 of 4cazA
- active site: N152 (= N149), K175 (= K172), E251 (= E247), C285 (= C281), E386 (= E384), E463 (= E463)
- binding [[(2R,3S,4R,5R)-5-[(3R)-3-aminocarbonyl-3,4-dihydro-2H-pyridin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanidyl-phosphoryl] [(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl phosphate: I148 (= I145), G149 (≠ T146), W151 (= W148), N152 (= N149), K175 (= K172), E178 (≠ D175), G208 (= G205), G212 (= G209), F226 (= F223), T227 (= T224), G228 (= G225), G229 (≠ S226), T232 (≠ V229), V236 (≠ I233), E251 (= E247), L252 (≠ M248), C285 (= C281), E386 (= E384), F388 (= F386)
2woxA Betaine aldehyde dehydrogenase from pseudomonas aeruginosa with NAD(p) h-catalytic thiol adduct. (see paper)
36% identity, 98% coverage: 8:477/482 of query aligns to 10:477/489 of 2woxA
- active site: N152 (= N149), K175 (= K172), E251 (= E247), C285 (= C281), E386 (= E384), E463 (= E463)
- binding nadph dihydro-nicotinamide-adenine-dinucleotide phosphate: I148 (= I145), G149 (≠ T146), W151 (= W148), N152 (= N149), K175 (= K172), S177 (≠ A174), E178 (≠ D175), G208 (= G205), G212 (= G209), F226 (= F223), T227 (= T224), G228 (= G225), G229 (≠ S226), T232 (≠ V229), V236 (≠ I233), E251 (= E247), L252 (≠ M248), C285 (= C281), E386 (= E384), F388 (= F386)
2wmeA Crystallographic structure of betaine aldehyde dehydrogenase from pseudomonas aeruginosa (see paper)
36% identity, 98% coverage: 8:477/482 of query aligns to 10:477/489 of 2wmeA
- active site: N152 (= N149), K175 (= K172), E251 (= E247), C285 (= C281), E386 (= E384), E463 (= E463)
- binding nadp nicotinamide-adenine-dinucleotide phosphate: G149 (≠ T146), W151 (= W148), K175 (= K172), S177 (≠ A174), E178 (≠ D175), G208 (= G205), G212 (= G209), F226 (= F223), G228 (= G225), G229 (≠ S226), T232 (≠ V229), V236 (≠ I233)
Q9HTJ1 NAD/NADP-dependent betaine aldehyde dehydrogenase; BADH; EC 1.2.1.8 from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) (see 2 papers)
36% identity, 98% coverage: 8:477/482 of query aligns to 11:478/490 of Q9HTJ1
- GAWN 150:153 (≠ TPWN 146:149) binding NADPH
- K162 (= K158) active site, Charge relay system
- KPSE 176:179 (≠ KPAD 172:175) binding NADPH
- G209 (= G205) binding NADPH
- GTST 230:233 (≠ SVGV 226:229) binding NADPH
- E252 (= E247) active site, Proton acceptor
- C286 (= C281) binding covalent; modified: Cysteine sulfenic acid (-SOH)
- E387 (= E384) binding NADPH
- E464 (= E463) active site, Charge relay system
Query Sequence
>WP_013722403.1 NCBI__GCF_000204645.1:WP_013722403.1
MTQHHNLIGGRWTPGASCAPNTNPSDLSDVIGEYAQGGADDVQAAVAAATAAFPAWSTSG
IQARHDALDKIGNEILARKEELGDLLAREEGKTRPEAIGEVARAGQIFKFFAGECLRLAG
EVLPSVRPNIGVEITREPVGVVGLITPWNFPIAIPAWKIAPALAYGNCVVLKPADLVPGC
AWALAEIIHKSGIPAGVFNLVMGRGRVIGEALVNHPGVAAISFTGSVGVGRGIAAACAKS
GKKVQLEMGGKNPQIVLDDADLAQAVELSAQSGFYSTGQRCTASSRLIVTDAIYPAFVEA
LQARMARIKVGDARAAGTDMGPVVSQAQLEQDLAYVEIAKTEGARLAAGGERVACHTGSG
RQGFFMAPTLFVDTAPGMRINREEVFGPVASVIRVQDYEEALAVANDTPFGLSAGIATTS
LKHATHFKRHSQAGMVMVNLPTAGVDYHVPFGGRKGSSYGPREQGRYAQEFYTTVKTAYT
LA
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SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory