Comparing WP_013722483.1 NCBI__GCF_000204645.1:WP_013722483.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 12 hits to proteins with known functional sites (download)
1euaA Schiff base intermediate in kdpg aldolase from escherichia coli (see paper)
57% identity, 86% coverage: 26:208/212 of query aligns to 26:208/213 of 1euaA
P0A955 KHG/KDPG aldolase; EC 4.1.3.16; EC 4.1.2.14 from Escherichia coli (strain K12) (see 3 papers)
57% identity, 86% coverage: 26:208/212 of query aligns to 26:208/213 of P0A955
1wauA Structure of kdpg aldolase e45n mutant (see paper)
56% identity, 86% coverage: 26:208/212 of query aligns to 26:208/213 of 1wauA
2c0aB Mechanism of the class i kdpg aldolase (see paper)
56% identity, 86% coverage: 26:208/212 of query aligns to 27:209/214 of 2c0aB
Sites not aligning to the query:
3vcrA Crystal structure of a putative kdpg (2-keto-3-deoxy-6- phosphogluconate) aldolase from oleispira antarctica (see paper)
51% identity, 92% coverage: 16:210/212 of query aligns to 13:213/216 of 3vcrA
6oviA Crystal structure of kdpg aldolase from legionella pneumophila with pyruvate captured at low ph as a covalent carbinolamine intermediate
50% identity, 91% coverage: 11:203/212 of query aligns to 8:200/210 of 6oviA
1mxsA Crystal structure of 2-keto-3-deoxy-6-phosphogluconate (kdpg) aldolase from pseudomonas putida. (see paper)
46% identity, 94% coverage: 11:210/212 of query aligns to 13:212/216 of 1mxsA
P00885 2-dehydro-3-deoxy-phosphogluconate aldolase; KDPG-aldolase; Phospho-2-dehydro-3-deoxygluconate aldolase; Phospho-2-keto-3-deoxygluconate aldolase; EC 4.1.2.14 from Pseudomonas putida (Arthrobacter siderocapsulatus) (see paper)
46% identity, 94% coverage: 11:210/212 of query aligns to 23:222/226 of P00885
Sites not aligning to the query:
5xsfA Crystal structure of the 2-keto-3-deoxy-6-phosphogluconate aldolase of zymomonas mobilis zm4 with 3-phosphoglycerate
49% identity, 95% coverage: 10:211/212 of query aligns to 7:204/209 of 5xsfA
1wa3D Mechanism of the class i kdpg aldolase (see paper)
31% identity, 85% coverage: 10:189/212 of query aligns to 4:183/203 of 1wa3D
Q6BF16 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; 2-oxo-3-deoxygalactonate 6-phosphate aldolase; 6-phospho-2-dehydro-3-deoxygalactonate aldolase; 6-phospho-2-keto-3-deoxygalactonate aldolase; KDPGal; EC 4.1.2.21 from Escherichia coli (strain K12) (see paper)
31% identity, 70% coverage: 35:182/212 of query aligns to 27:172/205 of Q6BF16
Sites not aligning to the query:
2v82A Kdpgal complexed to kdpgal (see paper)
31% identity, 70% coverage: 35:182/212 of query aligns to 26:171/205 of 2v82A
Sites not aligning to the query:
>WP_013722483.1 NCBI__GCF_000204645.1:WP_013722483.1
MAVTSLTALQVMRDAPVIPVIVLHDVRYAVPLARALVAGGIRMLEVTLRTPEALDCMRAI
AVEVSEAVVGAGTVRSPADAEAAARAGARFAVSPGFTPALGRACRDQGLPLLPGTATGSE
IMAAQEEGFSALKFFPAVQAGGAAMLKAWQGPFGDVVFCPTGGIGPGNAADFLALPNVAC
VGGSWLVPGDALAQGDWARITQLAREAVALRI
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory