SitesBLAST
Comparing WP_013834671.1 NCBI__GCF_000214825.1:WP_013834671.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 20 (the maximum) hits to proteins with known functional sites (download)
6ed7A Crystal structure of 7,8-diaminopelargonic acid synthase bound to inhibitor mac13772
47% identity, 95% coverage: 2:422/443 of query aligns to 4:421/429 of 6ed7A
- active site: Y17 (= Y15), Y144 (= Y143), D245 (= D247), K274 (= K276)
- binding 2-[(2-nitrophenyl)sulfanyl]acetohydrazide: Y17 (= Y15), W52 (= W50), W52 (= W50), Y144 (= Y143), D147 (= D146), A217 (= A219), K274 (= K276), R391 (= R392), F393 (= F394), F393 (= F394)
- binding pyridoxal-5'-phosphate: G112 (= G110), S113 (= S111), Y144 (= Y143), H145 (= H144), D245 (= D247), I247 (= I249), K274 (= K276)
P12995 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; 7,8-diamino-pelargonic acid aminotransferase; DAPA AT; DAPA aminotransferase; 7,8-diaminononanoate synthase; DANS; Diaminopelargonic acid synthase; EC 2.6.1.62 from Escherichia coli (strain K12) (see 4 papers)
47% identity, 95% coverage: 2:422/443 of query aligns to 4:421/429 of P12995
- Y17 (= Y15) mutation to F: Severely reduces the aminotransferase activity.
- W52 (= W50) binding substrate
- GS 112:113 (= GS 110:111) binding pyridoxal 5'-phosphate
- Y144 (= Y143) mutation to F: Severely reduces the aminotransferase activity.
- D147 (= D146) mutation to N: Loss of aminotransferase activity.
- D245 (= D247) binding pyridoxal 5'-phosphate
- R253 (= R255) mutation to A: Has only a small effect on the rate of reaction with DAPA.; mutation to K: Increases aminotransferase activity toward SAM.; mutation to M: Loss of aminotransferase activity.; mutation to Q: Increases aminotransferase activity toward SAM.
- K274 (= K276) binding substrate; modified: N6-(pyridoxal phosphate)lysine
- G307 (= G309) binding substrate
- PT 308:309 (= PT 310:311) binding pyridoxal 5'-phosphate
- R391 (= R392) binding substrate; mutation to A: Reduces aminotransferase activity.
1mlzA Crystal structure of 7,8-diaminopelargonic acid synthase in complex with the trans-isomer of amiclenomycin. (see paper)
47% identity, 95% coverage: 2:422/443 of query aligns to 4:420/427 of 1mlzA
- active site: Y17 (= Y15), Y144 (= Y143), E210 (= E213), D244 (= D247), A247 (= A250), K273 (= K276), Y397 (= Y399)
- binding pyridoxal-5'-phosphate: G112 (= G110), S113 (= S111), Y144 (= Y143), H145 (= H144), D244 (= D247), I246 (= I249), K273 (= K276), P307 (= P310), T308 (= T311)
- binding trans-amiclenomycin: W52 (= W50), W53 (= W51), Y144 (= Y143), K273 (= K276), R390 (= R392), F392 (= F394)
1mlyA Crystal structure of 7,8-diaminopelargonic acid synthase in complex with the cis isomer of amiclenomycin (see paper)
47% identity, 95% coverage: 2:422/443 of query aligns to 4:420/427 of 1mlyA
- active site: Y17 (= Y15), Y144 (= Y143), E210 (= E213), D244 (= D247), A247 (= A250), K273 (= K276), Y397 (= Y399)
- binding cis-amiclenomycin: W52 (= W50), W53 (= W51), K273 (= K276), R390 (= R392), F392 (= F394)
- binding pyridoxal-5'-phosphate: G112 (= G110), S113 (= S111), Y144 (= Y143), H145 (= H144), D244 (= D247), I246 (= I249), K273 (= K276), P307 (= P310), T308 (= T311)
6erkA Crystal structure of diaminopelargonic acid aminotransferase from psychrobacter cryohalolentis (see paper)
48% identity, 95% coverage: 6:426/443 of query aligns to 9:417/420 of 6erkA
1dtyA Crystal structure of adenosylmethionine-8-amino-7-oxonanoate aminotransferase with pyridoxal phosphate cofactor.
47% identity, 95% coverage: 2:422/443 of query aligns to 4:421/429 of 1dtyA
- active site: Y17 (= Y15), Y144 (= Y143), E211 (= E213), D245 (= D247), A248 (= A250), K274 (= K276), Y398 (= Y399)
- binding pyridoxal-5'-phosphate: G112 (= G110), S113 (= S111), Y144 (= Y143), H145 (= H144), D245 (= D247), I247 (= I249), K274 (= K276)
4w1vA Crystal structure of 7,8-diaminopelargonic acid synthase (bioa) from mycobacterium tuberculosis, complexed with a thiazole inhibitor (see paper)
48% identity, 93% coverage: 7:418/443 of query aligns to 10:416/425 of 4w1vA
- active site: Y18 (= Y15), Y147 (= Y143), E210 (= E213), D244 (= D247), A247 (= A250), K273 (= K276), Y397 (= Y399)
- binding dimethyl (2R)-5-(3-fluorophenyl)-1H-pyrrolo[1,2-c][1,3]thiazole-6,7-dicarboxylate 2-oxide: P17 (= P14), Y18 (= Y15), W54 (= W50), M81 (= M77), G83 (= G79), Y147 (= Y143), G306 (= G309), P307 (= P310), T308 (= T311), F392 (= F394)
- binding pyridoxal-5'-phosphate: G114 (= G110), S115 (= S111), Y147 (= Y143), H148 (= H144), E210 (= E213), D244 (= D247), I246 (= I249), K273 (= K276)
4cxrA Mycobaterium tuberculosis transaminase bioa complexed with 1-(1,3- benzothiazol-2-yl)methanamine (see paper)
48% identity, 93% coverage: 7:418/443 of query aligns to 10:416/425 of 4cxrA
- active site: Y18 (= Y15), Y147 (= Y143), E210 (= E213), D244 (= D247), A247 (= A250), K273 (= K276), Y397 (= Y399)
- binding 1-(1,3-benzothiazol-2-yl)methanamine: Y18 (= Y15), W54 (= W50), W55 (= W51), A216 (= A219)
- binding pyridoxal-5'-phosphate: G114 (= G110), S115 (= S111), Y147 (= Y143), H148 (= H144), E210 (= E213), D244 (= D247), I246 (= I249), K273 (= K276), P307 (= P310), T308 (= T311)
1qj3A Crystal structure of 7,8-diaminopelargonic acid synthase in complex with 7-keto-8-aminopelargonic acid (see paper)
47% identity, 95% coverage: 2:422/443 of query aligns to 4:409/416 of 1qj3A
- active site: Y17 (= Y15), Y144 (= Y143), E201 (= E213), D235 (= D247), A238 (= A250), K264 (= K276), Y386 (= Y399)
- binding 7-keto-8-aminopelargonic acid: Y17 (= Y15), W52 (= W50), Y144 (= Y143), K264 (= K276), R379 (= R392), F381 (= F394)
- binding pyridoxal-5'-phosphate: G112 (= G110), S113 (= S111), Y144 (= Y143), H145 (= H144), G146 (= G145), D235 (= D247), I237 (= I249), A238 (= A250), K264 (= K276)
4cxqA Mycobaterium tuberculosis transaminase bioa complexed with substrate kapa (see paper)
48% identity, 93% coverage: 7:418/443 of query aligns to 10:418/427 of 4cxqA
- active site: Y18 (= Y15), Y149 (= Y143), E212 (= E213), D246 (= D247), A249 (= A250), K275 (= K276), Y399 (= Y399)
- binding 7-keto-8-aminopelargonic acid: W56 (= W50), Y149 (= Y143), G308 (= G309), T310 (= T311), R392 (= R392)
- binding pyridoxal-5'-phosphate: G116 (= G110), S117 (= S111), Y149 (= Y143), H150 (= H144), G151 (= G145), E212 (= E213), D246 (= D247), I248 (= I249), K275 (= K276), P309 (= P310), T310 (= T311)
5kgtA Crystal structure of 7,8-diaminopelargonic acid synthase (bioa) from mycobacterium tuberculosis, complexed with an inhibitor optimized from hts lead: 1-[4-[4-(3-chlorophenyl)carbonylpiperidin-1- yl]phenyl]ethanone (see paper)
47% identity, 93% coverage: 7:418/443 of query aligns to 10:419/429 of 5kgtA
- active site: Y18 (= Y15), Y150 (= Y143), E213 (= E213), D247 (= D247), A250 (= A250), K276 (= K276), Y400 (= Y399)
- binding 1-[4-[4-(3-chlorophenyl)carbonylpiperidin-1-yl]phenyl]ethanone: M84 (= M77), G86 (= G79), G309 (= G309), T311 (= T311)
- binding pyridoxal-5'-phosphate: S116 (= S109), G117 (= G110), S118 (= S111), Y150 (= Y143), H151 (= H144), G152 (= G145), E213 (= E213), D247 (= D247), I249 (= I249), K276 (= K276)
5kgsA Crystal structure of 7,8-diaminopelargonic acid synthase (bioa) from mycobacterium tuberculosis, complexed with an inhibitor optimized from hts lead: 5-[4-(1,3-benzodioxol-5-ylcarbonyl)piperazin-1-yl]-2, 3-dihydroinden-1-one (see paper)
47% identity, 93% coverage: 7:418/443 of query aligns to 10:419/429 of 5kgsA
- active site: Y18 (= Y15), Y150 (= Y143), E213 (= E213), D247 (= D247), A250 (= A250), K276 (= K276), Y400 (= Y399)
- binding 5-[4-(1,3-benzodioxol-5-ylcarbonyl)piperazin-1-yl]-2,3-dihydroinden-1-one: P17 (= P14), Y18 (= Y15), W57 (= W50), M84 (= M77), G86 (= G79), Y150 (= Y143), D162 (= D155), G165 (≠ D158), G166 (= G159), P310 (= P310), T311 (= T311), F395 (= F394)
- binding pyridoxal-5'-phosphate: G117 (= G110), S118 (= S111), Y150 (= Y143), H151 (= H144), G152 (= G145), E213 (= E213), D247 (= D247), I249 (= I249), K276 (= K276)
4xjpA Crystal structure of 7,8-diaminopelargonic acid synthase (bioa) from mycobacterium tuberculosis, complexed with an inhibitor optimized from hts lead (see paper)
47% identity, 93% coverage: 7:418/443 of query aligns to 10:419/429 of 4xjpA
- active site: Y18 (= Y15), Y150 (= Y143), E213 (= E213), D247 (= D247), A250 (= A250), K276 (= K276), Y400 (= Y399)
- binding 1-{4-[4-(1,3-benzodioxol-5-ylcarbonyl)piperazin-1-yl]phenyl}ethanone: P17 (= P14), Y18 (= Y15), W57 (= W50), M84 (= M77), G86 (= G79), Y150 (= Y143), G165 (≠ D158), G166 (= G159), A219 (= A219), G220 (= G220), G309 (= G309), F395 (= F394)
- binding pyridoxal-5'-phosphate: G117 (= G110), S118 (= S111), Y150 (= Y143), H151 (= H144), G152 (= G145), E213 (= E213), D247 (= D247), I249 (= I249), K276 (= K276), P310 (= P310), T311 (= T311)
4xjmA Crystal structure of 7,8-diaminopelargonic acid synthase (bioa) from mycobacterium tuberculosis, complexed with a hts lead compound
47% identity, 93% coverage: 7:418/443 of query aligns to 10:419/429 of 4xjmA
- active site: Y18 (= Y15), Y150 (= Y143), E213 (= E213), D247 (= D247), A250 (= A250), K276 (= K276), Y400 (= Y399)
- binding 3-{1-[(5-acetylthiophen-2-yl)carbonyl]piperidin-4-yl}-N-(3-methoxyphenyl)propanamide: P17 (= P14), Y18 (= Y15), W57 (= W50), M84 (= M77), G86 (= G79), Y150 (= Y143), M158 (= M151), G165 (≠ D158), G166 (= G159), M167 (= M160), W171 (≠ F164), M307 (= M307), G309 (= G309), T311 (= T311)
- binding pyridoxal-5'-phosphate: G117 (= G110), S118 (= S111), Y150 (= Y143), H151 (= H144), G152 (= G145), E213 (= E213), D247 (= D247), I249 (= I249), K276 (= K276), P310 (= P310), T311 (= T311)
4xjlA Crystal structure of 7,8-diaminopelargonic acid synthase (bioa) from mycobacterium tuberculosis, complexed with a hts lead compound
47% identity, 93% coverage: 7:418/443 of query aligns to 10:419/429 of 4xjlA
- active site: Y18 (= Y15), Y150 (= Y143), E213 (= E213), D247 (= D247), A250 (= A250), K276 (= K276), Y400 (= Y399)
- binding N-(1,2,3-benzothiadiazol-5-yl)-4-phenylpiperazine-1-carboxamide: P17 (= P14), Y18 (= Y15), W57 (= W50), M84 (= M77), G86 (= G79), Y150 (= Y143), C161 (= C154), G165 (≠ D158), G166 (= G159), A219 (= A219)
- binding pyridoxal-5'-phosphate: G117 (= G110), S118 (= S111), Y150 (= Y143), H151 (= H144), G152 (= G145), E213 (= E213), D247 (= D247), I249 (= I249), K276 (= K276), P310 (= P310), T311 (= T311)
4wygA Crystal structure of 7,8-diaminopelargonic acid synthase (bioa) from mycobacterium tuberculosis complexed with a fragment hit (see paper)
47% identity, 93% coverage: 7:418/443 of query aligns to 10:419/429 of 4wygA
- active site: Y18 (= Y15), Y150 (= Y143), E213 (= E213), D247 (= D247), A250 (= A250), K276 (= K276), Y400 (= Y399)
- binding 1-{4-[(4-chloro-1H-pyrazol-1-yl)methyl]phenyl}methanamine: Y18 (= Y15), W57 (= W50), W58 (= W51), Y150 (= Y143), A219 (= A219), F395 (= F394)
- binding pyridoxal-5'-phosphate: G117 (= G110), S118 (= S111), Y150 (= Y143), H151 (= H144), E213 (= E213), D247 (= D247), I249 (= I249), K276 (= K276), P310 (= P310), T311 (= T311)
4wyeA Crystal structure of 7,8-diaminopelargonic acid synthase (bioa) from mycobacterium tuberculosis complexed with a dsf fragment hit (see paper)
47% identity, 93% coverage: 7:418/443 of query aligns to 10:419/429 of 4wyeA
- active site: Y18 (= Y15), Y150 (= Y143), E213 (= E213), D247 (= D247), A250 (= A250), K276 (= K276), Y400 (= Y399)
- binding phenyl(piperidin-4-yl)methanone: Y18 (= Y15), W57 (= W50), W58 (= W51), A219 (= A219), F395 (= F394), Y400 (= Y399)
- binding pyridoxal-5'-phosphate: G117 (= G110), S118 (= S111), Y150 (= Y143), H151 (= H144), G152 (= G145), E213 (= E213), D247 (= D247), I249 (= I249), K276 (= K276), P310 (= P310), T311 (= T311)
4w1xA Crystal structure of 7,8-diaminopelargonic acid synthase (bioa) from mycobacterium tuberculosis, complexed with 1-(4-(4-(3-chlorobenzoyl) piperazin-1-yl)phenyl)ethanone (see paper)
47% identity, 93% coverage: 7:418/443 of query aligns to 10:419/429 of 4w1xA
- active site: Y18 (= Y15), Y150 (= Y143), E213 (= E213), D247 (= D247), A250 (= A250), K276 (= K276), Y400 (= Y399)
- binding 1-{4-[4-(3-chlorobenzoyl)piperazin-1-yl]phenyl}ethanone: P17 (= P14), Y18 (= Y15), W57 (= W50), M84 (= M77), G86 (= G79), Y150 (= Y143), G165 (≠ D158), G166 (= G159), A219 (= A219), G309 (= G309), T311 (= T311)
- binding pyridoxal-5'-phosphate: G117 (= G110), S118 (= S111), Y150 (= Y143), H151 (= H144), G152 (= G145), E213 (= E213), D247 (= D247), I249 (= I249), K276 (= K276), P310 (= P310), T311 (= T311)
4w1wA Crystal structure of 7,8-diaminopelargonic acid synthase (bioa) from mycobacterium tuberculosis, complexed with 7-(diethylamino)-3- (thiophene-2-carbonyl)-2h-chromen-2-one (see paper)
47% identity, 93% coverage: 7:418/443 of query aligns to 10:419/429 of 4w1wA
- active site: Y18 (= Y15), Y150 (= Y143), E213 (= E213), D247 (= D247), A250 (= A250), K276 (= K276), Y400 (= Y399)
- binding 7-(diethylamino)-3-(thiophen-2-ylcarbonyl)-2H-chromen-2-one: P17 (= P14), Y18 (= Y15), W57 (= W50), M84 (= M77), G86 (= G79), Y150 (= Y143), G165 (≠ D158), G309 (= G309), P310 (= P310), R393 (= R392)
- binding pyridoxal-5'-phosphate: G117 (= G110), S118 (= S111), Y150 (= Y143), H151 (= H144), G152 (= G145), E213 (= E213), D247 (= D247), I249 (= I249), K276 (= K276), P310 (= P310), T311 (= T311)
P9WQ81 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; 7,8-diamino-pelargonic acid aminotransferase; DAPA AT; DAPA aminotransferase; 7,8-diaminononanoate synthase; DANS; 7,8-diaminopelargonic acid synthase; DAPAS; Diaminopelargonic acid synthase; EC 2.6.1.62 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see paper)
47% identity, 93% coverage: 7:418/443 of query aligns to 17:426/437 of P9WQ81
- Y25 (= Y15) mutation to A: Does not show detectable activity at 335 nm with SAM, even up to concentrations of 3 mM, and shows approximately 70% reduced activity with high concentrations of DAPA (0.5 mM).
- W64 (= W50) binding S-adenosyl-L-methionine
- Y157 (= Y143) binding S-adenosyl-L-methionine
- K283 (= K276) modified: N6-(pyridoxal phosphate)lysine
- G316 (= G309) binding S-adenosyl-L-methionine
Query Sequence
>WP_013834671.1 NCBI__GCF_000214825.1:WP_013834671.1
MNNFLFDQQHIWHPYNRLPARQPALAASSTQGCTITLDDGRQLLDAMSSWWSAIHGYNHP
TIIAAASEQLQKMPHIMFGGFSHQPATELAQALIDISPPSLTHTFFADSGSIAVEVALKM
ALQYWKSIGQPRKSRFIALQHAYHGDTFGAMSVCDPVDGMHHLFADNLMPNLFAKAPPIC
HHPSEPLDNQACLASLAQILEQHHHEIAAFIFEPIVQGAGGMRFYSADYLKEAAALCRHY
DVLLIADEIATGLGRTGKLFACEWADIEPDILTLGKGLSAGMISLAAVLCNERIRAGISQ
AAPGLLMHGPTFMANPLACRIAHASVKLLNDYDWQTAVTQLQHIFSQAWQGLAHPDIVGI
RCLGGVAVIELNRDDLAGLIQEFALEEGVWLRPFGKLVYSMPAYTMTATEAQQIAQVMAS
AVMKALIAADKQDTALKQQRPFV
Or try a new SitesBLAST search
SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory