SitesBLAST
Comparing WP_013834800.1 NCBI__GCF_000214825.1:WP_013834800.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
8jdvA Crystal structure of mldhd in complex with 2-ketohexanoic acid (see paper)
23% identity, 32% coverage: 126:539/1286 of query aligns to 1:347/454 of 8jdvA
- binding 2-Ketohexanoic acid: V75 (≠ P206), R317 (= R511), W321 (vs. gap)
- binding flavin-adenine dinucleotide: P68 (= P193), G70 (≠ T201), T71 (≠ G202), G72 (= G203), T73 (≠ A204), G74 (≠ I205), G78 (≠ A209), V79 (≠ N210), L90 (≠ F221), P132 (= P266), G133 (≠ T267), A134 (≠ S268), G140 (= G276), M141 (≠ N277), A143 (≠ S279), T144 (≠ M280), A146 (= A282), S147 (≠ G283), E200 (= E379), G201 (= G380), I206 (= I385), W321 (vs. gap), Y322 (vs. gap)
Sites not aligning to the query:
8jdsA Crystal structure of mldhd in complex with pyruvate (see paper)
23% identity, 32% coverage: 126:539/1286 of query aligns to 1:349/456 of 8jdsA
- binding flavin-adenine dinucleotide: E32 (≠ A157), P68 (= P193), G70 (≠ T201), T71 (≠ G202), G72 (= G203), T73 (≠ A204), G74 (≠ I205), G78 (≠ A209), V79 (≠ N210), L90 (≠ F221), P132 (= P266), G133 (≠ T267), A134 (≠ S268), G140 (= G276), M141 (≠ N277), A143 (≠ S279), T144 (≠ M280), A146 (= A282), S147 (≠ G283), E200 (= E379), G201 (= G380), I206 (= I385), W323 (vs. gap)
- binding pyruvic acid: R319 (= R511)
Sites not aligning to the query:
8jduA Crystal structure of mldhd in complex with 2-ketovaleric acid (see paper)
23% identity, 32% coverage: 126:539/1286 of query aligns to 1:348/455 of 8jduA
- binding 2-oxopentanoic acid: R318 (= R511), W322 (vs. gap)
- binding flavin-adenine dinucleotide: P68 (= P193), G70 (≠ T201), T71 (≠ G202), G72 (= G203), T73 (≠ A204), G74 (≠ I205), G78 (≠ A209), V79 (≠ N210), L90 (≠ F221), P132 (= P266), G133 (≠ T267), A134 (≠ S268), G140 (= G276), M141 (≠ N277), A143 (≠ S279), T144 (≠ M280), A146 (= A282), S147 (≠ G283), E200 (= E379), G201 (= G380), I206 (= I385), W322 (vs. gap)
Sites not aligning to the query:
8jdrA Crystal structure of h405a mldhd in complex with d-2-hydroxy-3-methyl- valeric acid (see paper)
23% identity, 32% coverage: 126:539/1286 of query aligns to 1:349/456 of 8jdrA
- binding flavin-adenine dinucleotide: P68 (= P193), G70 (≠ T201), T71 (≠ G202), G72 (= G203), T73 (≠ A204), G74 (≠ I205), G78 (≠ A209), V79 (≠ N210), L90 (≠ F221), P132 (= P266), G133 (≠ T267), A134 (≠ S268), G140 (= G276), M141 (≠ N277), A143 (≠ S279), T144 (≠ M280), A146 (= A282), S147 (≠ G283), E200 (= E379), G201 (= G380), I206 (= I385), Y324 (vs. gap)
- binding (2R,3S)-3-methyl-2-oxidanyl-pentanoic acid: R319 (= R511), W323 (vs. gap)
Sites not aligning to the query:
8jdqA Crystal structure of h405a mldhd in complex with d-2-hydroxyisocaproic acid (see paper)
23% identity, 32% coverage: 126:539/1286 of query aligns to 1:349/456 of 8jdqA
- binding (2R)-2-hydroxy-4-methylpentanoic acid: R319 (= R511), W323 (vs. gap)
- binding flavin-adenine dinucleotide: P68 (= P193), G70 (≠ T201), T71 (≠ G202), G72 (= G203), T73 (≠ A204), G74 (≠ I205), G78 (≠ A209), V79 (≠ N210), L90 (≠ F221), P132 (= P266), G133 (≠ T267), A134 (≠ S268), G140 (= G276), M141 (≠ N277), A143 (≠ S279), T144 (≠ M280), A146 (= A282), S147 (≠ G283), E200 (= E379), G201 (= G380), I206 (= I385)
Sites not aligning to the query:
8jdoA Crystal structure of h405a mldhd in complex with d-2-hydroxyhexanoic acid (see paper)
23% identity, 32% coverage: 126:539/1286 of query aligns to 1:349/456 of 8jdoA
- binding (2R)-2-hydroxyhexanoic acid: R319 (= R511), W323 (vs. gap)
- binding flavin-adenine dinucleotide: P68 (= P193), G70 (≠ T201), T71 (≠ G202), G72 (= G203), T73 (≠ A204), G74 (≠ I205), G78 (≠ A209), V79 (≠ N210), L90 (≠ F221), P132 (= P266), G133 (≠ T267), A134 (≠ S268), G140 (= G276), M141 (≠ N277), A143 (≠ S279), T144 (≠ M280), A146 (= A282), S147 (≠ G283), E200 (= E379), G201 (= G380), I206 (= I385), Y324 (vs. gap)
Sites not aligning to the query:
8jdnA Crystal structure of h405a mldhd in complex with d-2-hydroxyvaleric acid (see paper)
23% identity, 32% coverage: 126:539/1286 of query aligns to 1:349/456 of 8jdnA
- binding flavin-adenine dinucleotide: P68 (= P193), G70 (≠ T201), T71 (≠ G202), G72 (= G203), T73 (≠ A204), G74 (≠ I205), G78 (≠ A209), V79 (≠ N210), L90 (≠ F221), P132 (= P266), G133 (≠ T267), A134 (≠ S268), G140 (= G276), M141 (≠ N277), A143 (≠ S279), T144 (≠ M280), A146 (= A282), S147 (≠ G283), E200 (= E379), G201 (= G380), I206 (= I385)
- binding (2R)-2-oxidanylpentanoic acid: R319 (= R511), W323 (vs. gap)
Sites not aligning to the query:
8jdgA Crystal structure of h405a mldhd in complex with d-2-hydroxybutanoic acid (see paper)
23% identity, 32% coverage: 126:539/1286 of query aligns to 1:349/456 of 8jdgA
- binding flavin-adenine dinucleotide: P68 (= P193), G70 (≠ T201), T71 (≠ G202), G72 (= G203), T73 (≠ A204), G74 (≠ I205), G78 (≠ A209), V79 (≠ N210), L90 (≠ F221), P132 (= P266), G133 (≠ T267), A134 (≠ S268), G140 (= G276), M141 (≠ N277), A143 (≠ S279), T144 (≠ M280), A146 (= A282), S147 (≠ G283), E200 (= E379), G201 (= G380), I206 (= I385)
- binding (2R)-2-oxidanylbutanoic acid: R319 (= R511)
Sites not aligning to the query:
8jdbA Crystal structure of h405a mldhd in complex with d-2-hydroxyoctanoic acid (see paper)
23% identity, 32% coverage: 126:539/1286 of query aligns to 1:349/456 of 8jdbA
- binding flavin-adenine dinucleotide: P68 (= P193), G70 (≠ T201), T71 (≠ G202), G72 (= G203), T73 (≠ A204), G74 (≠ I205), G78 (≠ A209), V79 (≠ N210), L90 (≠ F221), P132 (= P266), G133 (≠ T267), A134 (≠ S268), G140 (= G276), M141 (≠ N277), A143 (≠ S279), T144 (≠ M280), A146 (= A282), S147 (≠ G283), E200 (= E379), G201 (= G380), I206 (= I385), Y324 (vs. gap)
- binding (2R)-2-oxidanyloctanoic acid: V75 (≠ P206), R319 (= R511), W323 (vs. gap)
Sites not aligning to the query:
8jdtA Crystal structure of mldhd in complex with 2-ketobutanoic acid (see paper)
23% identity, 32% coverage: 126:539/1286 of query aligns to 1:348/455 of 8jdtA
- binding 2-ketobutyric acid: R318 (= R511)
- binding flavin-adenine dinucleotide: P68 (= P193), G70 (≠ T201), T71 (≠ G202), G72 (= G203), T73 (≠ A204), G74 (≠ I205), G78 (≠ A209), V79 (≠ N210), L90 (≠ F221), P132 (= P266), G133 (≠ T267), A134 (≠ S268), G140 (= G276), M141 (≠ N277), A143 (≠ S279), T144 (≠ M280), A146 (= A282), S147 (≠ G283), E200 (= E379), G201 (= G380), I206 (= I385), W322 (vs. gap)
Sites not aligning to the query:
6lpxA Crystal structure of human d-2-hydroxyglutarate dehydrogenase in complex with 2-oxoglutarate (2-og) (see paper)
21% identity, 29% coverage: 167:537/1286 of query aligns to 49:358/466 of 6lpxA
- binding 2-oxoglutaric acid: R333 (= R511), T337 (= T514), K348 (= K525)
- binding flavin-adenine dinucleotide: P75 (= P193), Q76 (≠ R194), G77 (= G195), G78 (= G196), N79 (≠ G197), T80 (= T198), G81 (= G199), M82 (≠ Y200), G85 (= G203), S86 (≠ A204), L139 (≠ P266), G140 (≠ T267), A141 (≠ S268), C145 (≠ S272), G149 (= G276), N150 (= N277), A152 (≠ S279), T153 (≠ M280), G157 (= G284), G207 (= G380), I212 (= I385)
Sites not aligning to the query:
6lpuA Crystal structure of human d-2-hydroxyglutarate dehydrogenase in complex with l-2-hydroxyglutarate (l-2-hg) (see paper)
21% identity, 29% coverage: 167:537/1286 of query aligns to 49:358/466 of 6lpuA
- binding flavin-adenine dinucleotide: P75 (= P193), G77 (= G195), G78 (= G196), N79 (≠ G197), T80 (= T198), G81 (= G199), G85 (= G203), S86 (≠ A204), L139 (≠ P266), G140 (≠ T267), A141 (≠ S268), C145 (≠ S272), H146 (≠ T273), G148 (= G275), G149 (= G276), N150 (= N277), A152 (≠ S279), T153 (≠ M280), A155 (= A282), E206 (= E379), G207 (= G380), I211 (≠ L384), I212 (= I385)
- binding (2s)-2-hydroxypentanedioic acid: R333 (= R511), T337 (= T514), K348 (= K525)
Sites not aligning to the query:
6lpqA Crystal structure of human d-2-hydroxyglutarate dehydrogenase in complex with d-malate (d-mal) (see paper)
21% identity, 29% coverage: 167:537/1286 of query aligns to 49:358/466 of 6lpqA
- binding flavin-adenine dinucleotide: P75 (= P193), G77 (= G195), G78 (= G196), N79 (≠ G197), T80 (= T198), G81 (= G199), G85 (= G203), S86 (≠ A204), L139 (≠ P266), G140 (≠ T267), A141 (≠ S268), C145 (≠ S272), H146 (≠ T273), G149 (= G276), N150 (= N277), A152 (≠ S279), T153 (≠ M280), A155 (= A282), G157 (= G284), E206 (= E379), G207 (= G380), I211 (≠ L384), I212 (= I385)
- binding d-malate: M82 (≠ Y200), R333 (= R511), T337 (= T514), K348 (= K525)
Sites not aligning to the query:
6lppA Crystal structure of human d-2-hydroxyglutarate dehydrogenase in complex with d-2-hydroxyglutarate (d-2-hg) (see paper)
21% identity, 29% coverage: 167:537/1286 of query aligns to 49:358/466 of 6lppA
- binding (2R)-2-hydroxypentanedioic acid: R333 (= R511), T337 (= T514), K348 (= K525)
- binding flavin-adenine dinucleotide: P75 (= P193), G77 (= G195), G78 (= G196), N79 (≠ G197), T80 (= T198), G81 (= G199), M82 (≠ Y200), G85 (= G203), S86 (≠ A204), L139 (≠ P266), G140 (≠ T267), A141 (≠ S268), C145 (≠ S272), G149 (= G276), N150 (= N277), A152 (≠ S279), T153 (≠ M280), A155 (= A282), G157 (= G284), G207 (= G380), I212 (= I385)
Sites not aligning to the query:
6lpnB Crystal structure of human d-2-hydroxyglutarate dehydrogenase in apo form (see paper)
21% identity, 29% coverage: 167:537/1286 of query aligns to 50:359/467 of 6lpnB
- binding flavin-adenine dinucleotide: P76 (= P193), G78 (= G195), G79 (= G196), N80 (≠ G197), T81 (= T198), G82 (= G199), M83 (≠ Y200), G86 (= G203), S87 (≠ A204), L140 (≠ P266), A142 (≠ S268), C146 (≠ S272), H147 (≠ T273), G150 (= G276), N151 (= N277), A153 (≠ S279), T154 (≠ M280), G208 (= G380), I212 (≠ L384), I213 (= I385)
Sites not aligning to the query:
8jdpA Crystal structure of h405a mldhd in complex with d-2-hydroxyisovaleric acid (see paper)
23% identity, 32% coverage: 126:539/1286 of query aligns to 1:348/455 of 8jdpA
- binding flavin-adenine dinucleotide: P68 (= P193), G70 (≠ T201), T71 (≠ G202), G72 (= G203), T73 (≠ A204), G74 (≠ I205), G78 (≠ A209), V79 (≠ N210), L90 (≠ F221), P132 (= P266), G133 (≠ T267), A134 (≠ S268), G140 (= G276), M141 (≠ N277), A143 (≠ S279), T144 (≠ M280), A146 (= A282), S147 (≠ G283), E200 (= E379), G201 (= G380), I206 (= I385)
- binding deaminohydroxyvaline: R319 (= R511)
Sites not aligning to the query:
Q8N465 D-2-hydroxyglutarate dehydrogenase, mitochondrial; EC 1.1.99.39 from Homo sapiens (Human) (see 7 papers)
21% identity, 29% coverage: 167:539/1286 of query aligns to 102:413/521 of Q8N465
- S109 (≠ E174) to W: in D2HGA1; uncertain significance; significant loss of catalytic activity; dbSNP:rs142050154
- N127 (≠ I192) to K: in D2HGA1; uncertain significance; complete loss of catalytic activity; dbSNP:rs762857195
- G131 (= G196) to V: in D2HGA1; uncertain significance; complete loss of catalytic activity
- I147 (≠ V213) to S: in D2HGA1; uncertain significance; severe phenotype; almost complete loss of catalytic activity; dbSNP:rs121434361
- M153 (≠ L219) to T: in D2HGA1; uncertain significance; significant loss of catalytic activity; to V: in D2HGA1; uncertain significance; significant loss of catalytic activity; dbSNP:rs1432270139
- C172 (≠ V246) to Y: in D2HGA1; uncertain significance; moderate reduction in catalytic activity; dbSNP:rs773735172
- P189 (≠ A263) to L: in D2HGA1; uncertain significance; almost complete loss of catalytic activity; dbSNP:rs587783517
- A205 (≠ S279) to V: in D2HGA1; uncertain significance; almost complete loss of catalytic activity; dbSNP:rs750889931
- A231 (≠ P305) to V: in D2HGA1; uncertain significance; significant loss of catalytic activity
- G233 (≠ A307) to S: in D2HGA1; uncertain significance; no effect on catalytic activity; dbSNP:rs374535734
- D375 (≠ S500) to Y: in D2HGA1; uncertain significance; moderate reduction in catalytic activity; dbSNP:rs267606759
- R386 (= R511) binding (R)-2-hydroxyglutarate; binding (R)-lactate; binding (R)-malate; mutation to A: Loss of catalytic activity.
- T390 (= T514) binding (R)-2-hydroxyglutarate; binding (R)-malate; mutation to A: Significantly reduced catalytic activity.
- V399 (≠ A523) to M: in D2HGA1; uncertain significance; moderate reduction in catalytic activity; dbSNP:rs746519212
- K401 (= K525) binding (R)-2-hydroxyglutarate; binding (R)-malate; mutation to A: Loss of catalytic activity.
Sites not aligning to the query:
- 15 R → G: in dbSNP:rs4675887
- 169:521 natural variant: Missing (in D2HGA1; uncertain significance)
- 400:521 natural variant: Missing (in D2HGA1; uncertain significance; complete loss of catalytic activity)
- 419 R → H: in D2HGA1; uncertain significance; moderate reduction in catalytic activity; dbSNP:rs199908032
- 426 A → T: in D2HGA1; uncertain significance; no effect on catalytic activity; dbSNP:rs146578303
- 434 binding Zn(2+); H→A: Loss of catalytic activity.
- 436 G → V: slight reduction in catalytic activity
- 439 N → D: in D2HGA1; uncertain significance; mild phenotype; moderate reduction in catalytic activity; dbSNP:rs121434362
- 441 binding Zn(2+); H→A: Loss of catalytic activity.
- 443 binding (R)-2-hydroxyglutarate; N→A: Significantly reduced catalytic activity.
- 444 V → A: in D2HGA1; uncertain significance; severe phenotype; significant reduction in catalytic activity; dbSNP:rs121434360
- 446 A → V: in D2HGA1; uncertain significance; moderate reduction in catalytic activity; dbSNP:rs746956176
- 475 binding Zn(2+); E→A: Loss of catalytic activity.
- 476 binding (R)-2-hydroxyglutarate; binding (R)-lactate; binding (R)-malate; H→A: Loss of catalytic activity.
- 477 G → R: in D2HGA1; uncertain significance; almost complete loss of catalytic activity; dbSNP:rs1453924640
8jdeA Crystal structure of mldhd in complex with d-lactate (see paper)
23% identity, 32% coverage: 126:539/1286 of query aligns to 1:348/455 of 8jdeA
- binding flavin-adenine dinucleotide: P68 (= P193), G70 (≠ T201), T71 (≠ G202), G72 (= G203), T73 (≠ A204), G74 (≠ I205), G78 (≠ A209), V79 (≠ N210), L90 (≠ F221), P132 (= P266), G133 (≠ T267), A134 (≠ S268), G140 (= G276), M141 (≠ N277), A143 (≠ S279), T144 (≠ M280), A146 (= A282), S147 (≠ G283), E200 (= E379), G201 (= G380), I206 (= I385), W322 (vs. gap)
- binding lactic acid: R318 (= R511)
Sites not aligning to the query:
8jdzA Crystal structure of mldhd in complex with 2-keto-3-methylvaleric acid (see paper)
23% identity, 32% coverage: 126:539/1286 of query aligns to 1:348/454 of 8jdzA
- binding (3S)-3-methyl-2-oxopentanoic acid: R318 (= R511), W322 (vs. gap)
- binding flavin-adenine dinucleotide: E32 (≠ A157), P68 (= P193), G70 (≠ T201), T71 (≠ G202), G72 (= G203), T73 (≠ A204), G74 (≠ I205), G78 (≠ A209), V79 (≠ N210), L90 (≠ F221), P132 (= P266), G133 (≠ T267), A134 (≠ S268), G140 (= G276), M141 (≠ N277), A143 (≠ S279), T144 (≠ M280), A146 (= A282), S147 (≠ G283), E200 (= E379), G201 (= G380), I206 (= I385), W322 (vs. gap)
Sites not aligning to the query:
8jdyA Crystal structure of mldhd in complex with 2-ketoisocaproic acid (see paper)
23% identity, 32% coverage: 126:539/1286 of query aligns to 1:348/454 of 8jdyA
- binding 2-oxo-4-methylpentanoic acid: R318 (= R511), W322 (vs. gap), S336 (≠ N527)
- binding flavin-adenine dinucleotide: P68 (= P193), G70 (≠ T201), T71 (≠ G202), G72 (= G203), T73 (≠ A204), G74 (≠ I205), G78 (≠ A209), V79 (≠ N210), L90 (≠ F221), P132 (= P266), G133 (≠ T267), A134 (≠ S268), G140 (= G276), M141 (≠ N277), A143 (≠ S279), T144 (≠ M280), A146 (= A282), S147 (≠ G283), E200 (= E379), G201 (= G380), I206 (= I385)
Sites not aligning to the query:
Query Sequence
>WP_013834800.1 NCBI__GCF_000214825.1:WP_013834800.1
MKTSKRIREIPYNYTSFSDREIVMRFIGESGWQTIEQLRESRGTGRSAQMLFEVLGDMWV
VTRNPYIQDDLLENAKRRQGLVDALHHRLNQVEARLNNNKLAESLLDEVKEAVKRFKDWF
PQQIALRQKVSKRLKKITRLDNVDFGGLARVSHATDATDWRVELPLVVISPDTEQETADI
VAACIELGLVIIPRGGGTGYTGGAIPLEANTAVINTEKLEFLSMVEKVELPGVGVKVPTV
RTGAGVVTKRVTELAERNGLVFAVDPTSHDASTIGGNISMNAGGKKAVLWGTTLDNLASW
KMVMPDASWLEVVRVNHNLGKLQDQATVSFELHRYESDGKTPRGEIERLDIPGSAFRQAG
LGKDVTDKFLSGLPGVQKEGCDGLITSARFILHRMPEHIRTVCLEFFGTDLSLAVPAIVE
ITDYIESKKAQGILLAGLEHLDERYVRAVKYNTKANRRELPKMILLGDIAGDNGFEVAKT
CQEIVELAKKRNAEGFVAVSAEARKRFWLDRSRTAAISAHTNAFKINEDVVIPLPRLNEY
NEGIERINIEMSLQNKVEILDALETYFNGDMPEYTLEDDFEDSQGDPAAYFKTKVDATLA
HLSNVRRKWQAFNDGLDKPAEQFLDLMDESARTLIRDNESLVKLILRRDLVVSYRREVLD
FLKQTFMGHDFEPMMKRLKELHFDIRNARLFVALHMHAGDGNIHTNIPVHSNNYRMIHQA
EAVVEQVMKLATELGGVISGEHGIGLTKIEFLAPEKIQAFVDYKNKVDPNGHFNKGKLMP
GSGLHNAYTPSLSLVKQEALILEASELDQLNNDIKDCLRCGKCKPVCQTHIPRANLLYSP
RNKILATGQVIEAFLYEEQTRRGISLHHFDAMNDVADHCTTCHKCETPCPVDIDFGDVSI
RMRKILTDMGQKKVSLGTKAALFYLNSGQPGLVKLLRTTMIGWGALGQRMGHRLAKWTGL
LGRKESLPAKSTGTTPVTQQVIHFVRKPLDTGPNQPTMRALLALEDRTIVPILRDPHKTT
EDSEAVFYFPGCGSERLFSDISMATLAMLYETGAQTILPPGYLCCGYPQTAAGQAAKGAQ
ITTENRALFHRVANTLNYMDIKTVLVSCGTCMDQLLKYEFEQIFPGCRLLDIHEYLMEKG
VKMESTNGVQYMYHAPCHDPMKKYDSTKVASELTGINVPLNDRCCSEAGTLATARPDIAN
QLRFRKEEELRKGIQDLTGADKAVNGNVKLLTSCPACQQGLNRYQDDTGLKTDYIVVELA
NNLMGKEWKKDFITSVQSEGIDRVLL
Or try a new SitesBLAST search
SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory