SitesBLAST

SitesBLAST – Find functional sites

SitesBLAST

Comparing WP_014449375.1 NCBI__GCF_000284315.1:WP_014449375.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 20 (the maximum) hits to proteins with known functional sites (download)

O43175 D-3-phosphoglycerate dehydrogenase; 3-PGDH; 2-oxoglutarate reductase; Malate dehydrogenase; EC 1.1.1.95; EC 1.1.1.399; EC 1.1.1.37 from Homo sapiens (Human) (see 3 papers)
44% identity, 76% coverage: 4:407/535 of query aligns to 5:409/533 of O43175

query
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O43175

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T78 (≠ A76) binding NAD(+)
R135 (≠ K133) to W: in PHGDHD; results in a 2-fold decrease in enzyme activity with 3-phosphohydroxypyruvate, but no change in substrate affinity; dbSNP:rs267606949
RI 155:156 (≠ KI 153:154) binding NAD(+)
D175 (= D173) binding NAD(+)
T207 (= T205) binding NAD(+)
CAR 234:236 (= CAR 232:234) binding NAD(+)
D260 (= D258) binding NAD(+)
V261 (= V259) to M: in PHGDHD; results in a four-fold decrease in substrate affinity and a slight increase in maximal enzyme activity with 3-phosphohydroxypyruvate; dbSNP:rs267606947
HLGA 283:286 (≠ HIGA 282:285) binding NAD(+)
A373 (≠ S372) to T: in PHGDHD; results in almost undetectable enzyme activity with 3-phosphohydroxypyruvate; dbSNP:rs201553627
G377 (= G376) to S: in PHGDHD; results in a 2-fold decrease in enzyme activity with 3-phosphohydroxypyruvate, but no change in substrate affinity; dbSNP:rs267606948

Sites not aligning to the query:

1 modified: Initiator methionine, Removed
2 modified: N-acetylalanine
425 V → M: in PHGDHD; results in almost undetectable enzyme activity with 3-phosphohydroxypyruvate; dbSNP:rs121907988
490 V → M: in PHGDHD; results in almost undetectable enzyme activity with 3-phosphohydroxypyruvate; dbSNP:rs121907987

7dkmA Phgdh covalently linked to oridonin (see paper)
51% identity, 57% coverage: 4:306/535 of query aligns to 1:303/306 of 7dkmA

query
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7dkmA

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binding nicotinamide-adenine-dinucleotide: T74 (≠ A76), A102 (≠ T104), G148 (= G150), R151 (≠ K153), I152 (= I154), Y170 (≠ F172), D171 (= D173), P172 (= P174), I173 (≠ Y175), H202 (= H204), T203 (= T205), P204 (= P206), T209 (= T211), C230 (= C232), A231 (= A233), R232 (= R234), H279 (= H282), G281 (= G284)
binding (1beta,6beta,7beta,8alpha,9beta,10alpha,13alpha,14R,16beta)-1,6,7,14-tetrahydroxy-7,20-epoxykauran-15-one: C14 (≠ D16), K17 (= K19), I18 (= I20), E293 (≠ L296)

6plfA Crystal structure of human phgdh complexed with compound 1 (see paper)
51% identity, 57% coverage: 4:306/535 of query aligns to 1:303/305 of 6plfA

query
sites
6plfA

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binding 4-{(1S)-1-[(5-chloro-6-{[(5S)-2-oxo-1,3-oxazolidin-5-yl]methoxy}-1H-indole-2-carbonyl)amino]-2-hydroxyethyl}benzoic acid: Y170 (≠ F172), D171 (= D173), P172 (= P174), L189 (= L191), H202 (= H204), T203 (= T205), P204 (= P206), L212 (= L214)

7ewhA Crystal structure of human phgdh in complex with homoharringtonine (see paper)
51% identity, 56% coverage: 6:306/535 of query aligns to 3:302/302 of 7ewhA

query
sites
7ewhA

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L

V

T

A

Q

T

I

R

A

M

K

Q

G

S

L

F

S

G

M

M

H

K

V

T

I

I

A

G

F

Y

D
|
D

P

P

Y

I

L

I

T

S

P

P

E

E

V

V

A

S

E

A

K

S

S

F

G

G

V

V

T

Q

P

Q

V

L

S

P

L

L

D

E

E

E

I

I

Y

W

Q

P

K

L

S

C

D

D

F

F

I

I

S

T

V

V

H
|
H

T
|
T

P
|
P

L

L

N

L

A

P

E

S

T

T

N

G

L

L

I

L

N

N

K

D

T

N

T

T

I

F

A

A

K

Q

M

C

K

K

G

G

V

V

Y

R

I

V

V

V

N

N

C

C

A

A

R

R

G

G

I

I

V

V

N

D

E

E

T

G

D

A

L

L

A

L

E

R

A

A

L

L

L

Q

S

S

G

G

H

Q

V

C

A

A

G

G

A

A

F

L

D

D

V

V

F

F

V

T

Q

E

E

E

P

P

V

-

P

P

A

R

D

D

H

R

P

A

L

L

L

V

K

D

I

H

D

E

S

N

F

V

I

I

S

S

T

C

P

P

H

H

I

L

G

G

A

A

A

S

T

T

K

K

E

E

A

A

Q

Q

E

S

N

R

V

C

A

G

L

E

A

E

I

I

A

A

D

V

Q

Q

M

F

V

V

D

D

Y

M

L

V

binding (3beta)-O~3~-[(2R)-2,6-dihydroxy-2-(2-methoxy-2-oxoethyl)-6-methylheptanoyl]cephalotaxine: L146 (≠ I149), G147 (= G150), L148 (≠ M151), G149 (= G152), R150 (≠ K153), I151 (= I154), G152 (= G155), D170 (= D173), H201 (= H204), T202 (= T205), P203 (= P206)

6rihA Crystal structure of phgdh in complex with compound 9 (see paper)
51% identity, 56% coverage: 6:306/535 of query aligns to 3:302/302 of 6rihA

query
sites
6rihA

R

K

V

V

L

L

V

I

S

S

D

D

A

S

I

L

S

D

E

P

D

C

G

C

L

R

K

K

I

I

F

L

R

Q

E

D

A

G

G

G

F

L

E

Q

V

V

V

E

K

K

T

Q

K

N

L

L

T

S

P

K

E

E

L

L

A

I

V

A

E

E

I

L

A

Q

G

D

Y

C

D

E

G

G

L

L

V

I

I

V

R

R

S

S

G

A

T

T

K

K

V

V

T

T

K

A

D

D

I

V

L

I

K

N

G

A

A

A

K

E

R

K

L

L

K

Q

V

V

G

G

R

R

A

A

G

G

A

T

G

G

L

V

D

D

N

N

V

V

D

D

L

L

D

E

A

A

T

T

S

R

H

K

G

G

I

I

V

L

V

V

M

M

N

N

T

T

P

P

G

N

G

G

N

N

T

S

I

L

T

S

T

A

A

A

E

E

H

L

T

T

M

C

S

G

L

M

L

I

M

M

S

C

M

L

A

A

R

R

R

Q

I

I

P

P

Q

Q

A

A

N

T

A

A

S

S

N

M

R

K

S

D

G

G

K

K

W

W

E

E

K

R

S

K

K

K

F

F

M

M

G

G

V

T

E

E

L

L

F

N

Q

G

K

K

T

T

L

L

G

G

I

I

I

L

G

G

M

L

G
|
G

K

R

I

I

G

G

Q

R

H

E

L

V

T

A

Q

T

I

R

A

M

K

Q

G

S

L

F

S

G

M

M

H

K

V

T

I

I

A

G

F
x
Y

D
|
D

P
|
P

Y
x
I

L
x
I

T

S

P

P

E

E

V

V

A

S

E

A

K

S

S

F

G

G

V

V

T

Q

P

Q

V

L

S

P

L

L

D

E

E

E

I

I

Y

W

Q

P

K

L

S

C

D

D

F

F

I

I

S

T

V

V

H

H

T
|
T

P
|
P

L

L

N

L

A

P

E

S

T

T

N

G

L
|
L

I

L

N

N

K

D

T

N

T

T

I

F

A

A

K

Q

M

C

K

K

G

G

V

V

Y

R

I

V

V

V

N

N

C

C

A

A

R

R

G

G

I

I

V

V

N

D

E

E

T

G

D

A

L

L

A

L

E

R

A

A

L

L

L

Q

S

S

G

G

H

Q

V

C

A

A

G

G

A

A

F

L

D

D

V

V

F

F

V

T

Q

E

E

E

P

P

V

-

P

P

A

R

D

D

H

R

P

A

L

L

L

V

K

D

I

H

D

E

S

N

F

V

I

I

S

S

T

C

P

P

H

H

I

L

G

G

A

A

A

S

T

T

K

K

E

E

A

A

Q

Q

E

S

N

R

V

C

A

G

L

E

A

E

I

I

A

A

D

V

Q

Q

M

F

V

V

D

D

Y

M

L

V

binding ~{N}-cyclopropyl-2-methyl-5-phenyl-pyrazole-3-carboxamide: G149 (= G152), Y169 (≠ F172), D170 (= D173), P171 (= P174), I172 (≠ Y175), I173 (≠ L176), T202 (= T205), P203 (= P206), L211 (= L214)

6plgA Crystal structure of human phgdh complexed with compound 15 (see paper)
51% identity, 56% coverage: 6:306/535 of query aligns to 3:302/303 of 6plgA

query
sites
6plgA

R

K

V

V

L

L

V

I

S

S

D

D

A

S

I

L

S

D

E

P

D

C

G

C

L

R

K

K

I

I

F

L

R

Q

E

D

A

G

G

G

F

L

E

Q

V

V

V

E

K

K

T

Q

K

N

L

L

T

S

P

K

E

E

L

L

A

I

V

A

E

E

I

L

A

Q

G

D

Y

C

D

E

G

G

L

L

V

I

I

V

R

R

S

S

G

A

T

T

K

K

V

V

T

T

K

A

D

D

I

V

L

I

K

N

G

A

A

A

K

E

R

K

L

L

K

Q

V

V

G

G

R

R

A

A

G

G

A

T

G

G

L

V

D

D

N

N

V

V

D

D

L

L

D

E

A

A

T

T

S

R

H

K

G

G

I

I

V

L

V

V

M

M

N

N

T

T

P

P

G

N

G

G

N

N

T

S

I

L

T

S

T

A

A

A

E

E

H

L

T

T

M

C

S

G

L

M

L

I

M

M

S

C

M

L

A

A

R

R

R

Q

I

I

P

P

Q

Q

A

A

N

T

A

A

S

S

N

M

R

K

S

D

G

G

K

K

W

W

E

E

K

R

S

K

K

K

F

F

M

M

G

G

V

T

E

E

L

L

F

N

Q

G

K

K

T

T

L

L

G

G

I

I

I

L

G

G

M

L

G
|
G

K
x
R

I

I

G

G

Q

R

H

E

L

V

T

A

Q

T

I

R

A

M

K

Q

G

S

L

F

S

G

M

M

H

K

V

T

I

I

A

G

F

Y

D
|
D

P
|
P

Y
x
I

L
x
I

T

S

P

P

E

E

V

V

A

S

E

A

K

S

S

F

G

G

V

V

T

Q

P

Q

V

L

S

P

L

L

D

E

E

E

I

I

Y

W

Q

P

K

L

S

C

D

D

F

F

I

I

S

T

V

V

H
|
H

T
|
T

P

P

L

L

N
x
L

A

P

E

S

T

T

N

G

L

L

I

L

N

N

K

D

T

N

T

T

I

F

A

A

K

Q

M

C

K

K

G

G

V

V

Y

R

I

V

V

V

N

N

C

C

A

A

R

R

G

G

I

I

V

V

N

D

E

E

T

G

D

A

L

L

A

L

E

R

A

A

L

L

L

Q

S

S

G

G

H

Q

V

C

A

A

G

G

A

A

F

L

D

D

V

V

F

F

V

T

Q

E

E

E

P

P

V

-

P

P

A

R

D

D

H

R

P

A

L

L

L

V

K

D

I

H

D

E

S

N

F

V

I

I

S

S

T

C

P

P

H

H

I

L

G

G

A

A

A

S

T

T

K

K

E

E

A

A

Q

Q

E

S

N

R

V

C

A

G

L

E

A

E

I

I

A

A

D

V

Q

Q

M

F

V

V

D

D

Y

M

L

V

binding (2S)-(4-{3-[(4,5-dichloro-1-methyl-1H-indole-2-carbonyl)amino]oxetan-3-yl}phenyl)(pyridin-3-yl)acetic acid: G149 (= G152), R150 (≠ K153), D170 (= D173), P171 (= P174), I172 (≠ Y175), I173 (≠ L176), H201 (= H204), T202 (= T205), L205 (≠ N208)

6rj5A Crystal structure of phgdh in complex with compound 39 (see paper)
52% identity, 56% coverage: 6:304/535 of query aligns to 3:300/301 of 6rj5A

query
sites
6rj5A

R

K

V

V

L

L

V

I

S

S

D

D

A

S

I

L

S

D

E

P

D

C

G

C

L

R

K

K

I

I

F

L

R

Q

E

D

A

G

G

G

F

L

E

Q

V

V

V

E

K

K

T

Q

K

N

L

L

T

S

P

K

E

E

L

L

A

I

V

A

E

E

I

L

A

Q

G

D

Y

C

D

E

G

G

L

L

V

I

I

V

R

R

S

S

G

A

T

T

K

K

V

V

T

T

K

A

D

D

I

V

L

I

K

N

G

A

A

A

K

E

R

K

L

L

K

Q

V

V

G

G

R

R

A

A

G

G

A

T

G

G

L

V

D

D

N

N

V

V

D

D

L

L

D

E

A

A

T

T

S

R

H

K

G

G

I

I

V

L

V

V

M

M

N

N

T

T

P

P

G

N

G

G

N

N

T

S

I

L

T

S

T

A

A

A

E

E

H

L

T

T

M

C

S

G

L

M

L

I

M

M

S

C

M

L

A

A

R

R

R

Q

I

I

P

P

Q

Q

A

A

N

T

A

A

S

S

N

M

R

K

S

D

G

G

K

K

W

W

E

E

K

R

S

K

K

K

F

F

M

M

G

G

V

T

E

E

L

L

F

N

Q

G

K

K

T

T

L

L

G

G

I

I

I
x
L

G

G

M

L

G

G

K

R

I

I

G

G

Q

R

H

E

L

V

T

A

Q

T

I

R

A

M

K

Q

G

S

L

F

S

G

M

M

H

K

V

T

I

I

A

G

F
x
Y

D
|
D

P
|
P

Y

I

L
x
I

T

S

P

P

E

E

V

V

A

S

E

A

K

S

S

F

G

G

V

V

T

Q

P

Q

V

L

S

P

L

L

D

E

E

E

I

I

Y

W

Q

P

K

L

S

C

D

D

F

F

I

I

S

T

V

V

H
|
H

T
|
T

P
|
P

L

L

N

L

A

P

E

S

T

T

N

G

L
|
L

I

L

N

N

K

D

T

N

T

T

I

F

A

A

K

Q

M

C

K

K

G

G

V

V

Y

R

I

V

V

V

N

N

C

C

A

A

R

R

G

G

I

I

V

V

N

D

E

E

T

G

D

A

L

L

A

L

E

R

A

A

L

L

L

Q

S

S

G

G

H

Q

V

C

A

A

G

G

A

A

F

L

D

D

V

V

F

F

V

T

Q

E

E

E

P

P

V

-

P

P

A

R

D

D

H

R

P

A

L

L

L

V

K

D

I

H

D

E

S

N

F

V

I

I

S

S

T

C

P

P

H

H

I

L

G

G

A

A

A

S

T

T

K

K

E

E

A

A

Q

Q

E

S

N

R

V

C

A

G

L

E

A

E

I

I

A

A

D

V

Q

Q

M

F

V

V

D

D

binding 2-methyl-~{N}-[(1~{R})-1-[4-(methylsulfonylcarbamoyl)phenyl]ethyl]-5-phenyl-pyrazole-3-carboxamide: L146 (≠ I149), Y169 (≠ F172), D170 (= D173), P171 (= P174), I173 (≠ L176), H201 (= H204), T202 (= T205), P203 (= P206), L211 (= L214)

6cwaA Crystal structure phgdh in complex with nadh and 3-phosphoglycerate at 1.77 a resolution (see paper)
52% identity, 56% coverage: 6:304/535 of query aligns to 2:299/299 of 6cwaA

query
sites
6cwaA

R

K

V

V

L

L

V

I

S

S

D

D

A

S

I

L

S

D

E

P

D

C

G

C

L

R

K

K

I

I

F

L

R

Q

E

D

A

G

G

G

F

L

E

Q

V

V

V

E

K

K

T

Q

K

N

L

L

T

S

P

K

E

E

L

L

A

I

V

A

E

E

I

L

A

Q

G

D

Y

C

D

E

G

G

L

L

V

I

I

V

R

R

S

S

G

A

T

T

K

K

V

V

T

T

K

A

D

D

I

V

L

I

K

N

G

A

A

A

K

E

R

K

L

L

K

Q

V

V

G

G

R

R

A

A

G

G

A

T

G

G

L

V

D

D

N

N

V

V

D

D

L

L

D

E

A

A

T

T

S

R

H

K

G

G

I

I

V

L

V

V

M

M

N

N

T

T

P

P

G

N

G

G

N
|
N

T

S

I

L

T

S

T
x
A

A

A

E

E

H

L

T

T

M

C

S

G

L

M

L

I

M

M

S

C

M

L

A

A

R

R

R

Q

I

I

P

P

Q

Q

A

A

N

T

A

A

S

S

N

M

R

K

S

D

G

G

K

K

W

W

E

E

K

R

S

K

K

K

F

F

M

M

G

G

V

T

E

E

L

L

F

N

Q

G

K

K

T

T

L

L

G

G

I

I

I

L

G

G

M

L

G

G

K
x
R

I
|
I

G

G

Q

R

H

E

L

V

T

A

Q

T

I

R

A

M

K

Q

G

S

L

F

S

G

M

M

H

K

V

T

I

I

A

G

F
x
Y

D
|
D

P
|
P

Y
x
I

L

I

T

S

P

P

E

E

V

V

A

S

E

A

K

S

S

F

G

G

V

V

T

Q

P

Q

V

L

S

P

L

L

D

E

E

E

I

I

Y

W

Q

P

K

L

S

C

D

D

F

F

I

I

S

T

V

V

H
|
H

T
|
T

P
|
P

L

L

N

L

A

P

E

S

T
|
T

T

T

N

G

L

L

I

L

N

N

K

D

T

N

T

T

I

F

A

A

K

Q

M

C

K

K

G

G

V

V

Y

R

I

V

V

V

N

N

C
|
C

A
|
A

R
|
R

G

G

I

I

V

V

N

D

E

E

T

G

D

A

L

L

A

L

E

R

A

A

L

L

L

Q

S

S

G

G

H

Q

V

C

A

A

G

G

A

A

F

L

D

D

V

V

F

F

V

T

Q

E

E

E

P

P

V

-

P

P

A

R

D

D

H

R

P

A

L

L

L

V

K

D

I

H

D

E

S

N

F

V

I

I

S

S

T

C

P

P

H
|
H

I

L

G
|
G

A

A

A

S

T

T

K

K

E

E

A

A

Q

Q

E

S

N

R

V

C

A

G

L

E

A

E

I

I

A

A

D

V

Q

Q

M

F

V

V

D

D

binding 1,4-dihydronicotinamide adenine dinucleotide: N96 (= N100), A100 (≠ T104), R149 (≠ K153), I150 (= I154), Y168 (≠ F172), D169 (= D173), P170 (= P174), I171 (≠ Y175), H200 (= H204), T201 (= T205), P202 (= P206), T207 (= T211), C228 (= C232), A229 (= A233), R230 (= R234), H277 (= H282), G279 (= G284)

6rj2A Crystal structure of phgdh in complex with compound 40 (see paper)
51% identity, 56% coverage: 7:306/535 of query aligns to 1:299/299 of 6rj2A

query
sites
6rj2A

V

V

L

L

V

I

S

S

D

D

A

S

I

L

S

D

E

P

D

C

G

C

L

R

K

K

I

I

F

L

R

Q

E

D

A

G

G

G

F

L

E

Q

V

V

V

E

K

K

T

Q

K

N

L

L

T

S

P

K

E

E

L

L

A

I

V

A

E

E

I

L

A

Q

G

D

Y

C

D

E

G

G

L

L

V

I

I

V

R

R

S

S

G

A

T

T

K

K

V

V

T

T

K

A

D

D

I

V

L

I

K

N

G

A

A

A

K

E

R

K

L

L

K

Q

V

V

G

G

R

R

A

A

G

G

A

T

G

G

L

V

D

D

N

N

V

V

D

D

L

L

D

E

A

A

T

T

S

R

H

K

G

G

I

I

V

L

V

V

M

M

N

N

T

T

P

P

G

N

G

G

N

N

T

S

I

L

T

S

T

A

A

A

E

E

H

L

T

T

M

C

S

G

L

M

L

I

M

M

S

C

M

L

A

A

R

R

R

Q

I

I

P

P

Q

Q

A

A

N

T

A

A

S

S

N

M

R

K

S

D

G

G

K

K

W

W

E

E

K

R

S

K

K

K

F

F

M

M

G

G

V

T

E

E

L

L

F

N

Q

G

K

K

T

T

L

L

G

G

I

I

I

L

G

G

M

L

G
|
G

K

R

I
|
I

G

G

Q

R

H

E

L

V

T

A

Q

T

I

R

A

M

K

Q

G

S

L

F

S

G

M

M

H

K

V

T

I

I

A

G

F
x
Y

D
|
D

P
|
P

Y
x
I

L
x
I

T

S

P

P

E

E

V

V

A

S

E

A

K

S

S

F

G

G

V

V

T

Q

P

Q

V

L

S

P

L

L

D

E

E

E

I

I

Y

W

Q

P

K

L

S

C

D

D

F

F

I

I

S

T

V

V

H
|
H

T
|
T

P

P

L

L

N

L

A

P

E

S

T

T

N

G

L
|
L

I

L

N

N

K

D

T

N

T

T

I

F

A

A

K

Q

M

C

K

K

G

G

V

V

Y

R

I

V

V

V

N

N

C

C

A

A

R
|
R

G

G

I

I

V

V

N

D

E

E

T

G

D

A

L

L

A

L

E

R

A

A

L

L

L

Q

S

S

G

G

H

Q

V

C

A

A

G

G

A

A

F

L

D

D

V

V

F

F

V

T

Q

E

E

E

P

P

V

-

P

P

A

R

D

D

H

R

P

A

L

L

L

V

K

D

I

H

D

E

S

N

F

V

I

I

S

S

T

C

P

P

H

H

I

L

G

G

A

A

A

S

T

T

K

K

E

E

A

A

Q

Q

E

S

N

R

V

C

A

G

L

E

A

E

I

I

A

A

D

V

Q

Q

M

F

V

V

D

D

Y

M

L

V

binding ~{N}-[(1~{R})-1-[4-(ethanoylsulfamoyl)phenyl]ethyl]-2-methyl-5-phenyl-pyrazole-3-carboxamide: G146 (= G152), I148 (= I154), Y166 (≠ F172), D167 (= D173), P168 (= P174), I169 (≠ Y175), I170 (≠ L176), H198 (= H204), T199 (= T205), L208 (= L214), R228 (= R234)

6rj3A Crystal structure of phgdh in complex with compound 15 (see paper)
51% identity, 56% coverage: 6:302/535 of query aligns to 2:297/297 of 6rj3A

query
sites
6rj3A

R

K

V

V

L

L

V

I

S

S

D

D

A

S

I

L

S

D

E

P

D

C

G

C

L

R

K

K

I

I

F

L

R

Q

E

D

A

G

G

G

F

L

E

Q

V

V

V

E

K

K

T

Q

K

N

L

L

T

S

P

K

E

E

L

L

A

I

V

A

E

E

I

L

A

Q

G

D

Y

C

D

E

G

G

L

L

V

I

I

V

R

R

S

S

G

A

T

T

K

K

V

V

T

T

K

A

D

D

I

V

L

I

K

N

G

A

A

A

K

E

R

K

L

L

K

Q

V

V

G

G

R

R

A

A

G

G

A

T

G

G

L

V

D

D

N

N

V

V

D

D

L

L

D

E

A

A

T

T

S

R

H

K

G

G

I

I

V

L

V

V

M

M

N

N

T

T

P

P

G

N

G

G

N

N

T

S

I

L

T

S

T

A

A

A

E

E

H

L

T

T

M

C

S

G

L

M

L

I

M

M

S

C

M

L

A

A

R

R

R

Q

I

I

P

P

Q

Q

A

A

N

T

A

A

S

S

N

M

R

K

S

D

G

G

K

K

W

W

E

E

K

R

S

K

K

K

F

F

M

M

G

G

V

T

E

E

L

L

F

N

Q

G

K

K

T

T

L

L

G

G

I

I

I
x
L

G

G

M

L

G

G

K

R

I

I

G

G

Q

R

H

E

L

V

T

A

Q

T

I

R

A

M

K

Q

G

S

L

F

S

G

M

M

H

K

V

T

I

I

A

G

F
x
Y

D
|
D

P
|
P

Y
x
I

L
x
I

T

S

P

P

E

E

V

V

A

S

E

A

K

S

S

F

G

G

V

V

T

Q

P

Q

V

L

S

P

L

L

D

E

E

E

I

I

Y

W

Q

P

K

L

S

C

D

D

F

F

I

I

S

T

V

V

H
|
H

T
|
T

P
|
P

L

L

N

L

A

P

E

S

T

T

N

G

L
|
L

I

L

N

N

K

D

T

N

T

T

I

F

A

A

K

Q

M

C

K

K

G

G

V

V

Y

R

I

V

V

V

N

N

C

C

A

A

R

R

G

G

I

I

V

V

N

D

E

E

T

G

D

A

L

L

A

L

E

R

A

A

L

L

L

Q

S

S

G

G

H

Q

V

C

A

A

G

G

A

A

F

L

D

D

V

V

F

F

V

T

Q

E

E

E

P

P

V

-

P

P

A

R

D

D

H

R

P

A

L

L

L

V

K

D

I

H

D

E

S

N

F

V

I

I

S

S

T

C

P

P

H

H

I

L

G

G

A

A

A

S

T

T

K

K

E

E

A

A

Q

Q

E

S

N

R

V

C

A

G

L

E

A

E

I

I

A

A

D

V

Q

Q

M

F

binding 4-[(1~{R})-1-[(2-methyl-5-phenyl-pyrazol-3-yl)carbonylamino]ethyl]benzoic acid: L145 (≠ I149), Y168 (≠ F172), D169 (= D173), P170 (= P174), I171 (≠ Y175), I172 (≠ L176), H200 (= H204), T201 (= T205), P202 (= P206), L210 (= L214)

3dc2A Crystal structure of serine bound d-3-phosphoglycerate dehydrogenase from mycobacterium tuberculosis (see paper)
36% identity, 86% coverage: 47:508/535 of query aligns to 43:503/526 of 3dc2A

query
sites
3dc2A

D

D

G

A

L

L

V

L

I

V

R

R

S

S

G

A

T

T

K

T

V

V

T

D

K

A

D

E

I

V

L

L

K

A

G

A

A

A

K

P

R

K

L

L

K

K

V

I

V

V

G

A

R

R

A

A

G

G

A

V

G

G

L

L

D

D

N

N

V

V

D

D

L

V

D

D

A

A

T

T

S

A

H

R

G

G

I

V

V

L

V

V

M

V

N

N

T

A

P

P

G

T

G

S

N
|
N

T

I

I

H

T

S

T

A

A

A

E

E

H

H

T

A

M

L

S

A

L

L

M

L

S

A

M

A

A

S

R

R

R

Q

I

I

P

P

Q

A

A

A

N

D

A

A

S

S

N

L

R

R

S

E

G

H

K

T

W

W

E

K

K

R

S

S

K

S

F

F

M

S

G

G

V

T

E

E

L

I

F

F

Q

G

K

K

T

T

L

V

G

G

I

V

G

G

M

L

G

G

K

R

I

I

G

G

Q

Q

H

L

L

V

T

A

Q

Q

I

R

A

I

K

A

G

A

L

F

S

G

M

A

H

Y

V

V

I

V

A

A

F

Y

D

D

P

P

Y

Y

L

V

T

S

P

P

E

A

V

R

A

A

E

A

K

Q

S

L

G

G

V

I

T

E

P

L

V

L

S

S

L

L

D

D

E

D

I

L

Y

L

Q

A

K

R

S

A

D

D

F

F

I

I

S

S

V

V

H

H

T

L

P

P

L

K

N

T

A

P

E

E

T

T

T

A

N

G

L

L

I

I

N

D

K

K

T

E

T

A

I

L

A

A

K

K

M

T

K

K

K

P

G

G

V

V

Y

I

I

I

V

V

N

N

C

A

A

A

R
|
R

G

G

I

L

V

V

N

D

E

E

T

A

D

A

L

L

A

A

E

D

A

A

L

I

L

T

S

G

G

G

H

H

V

V

A

R

G

A

A

A

A

G

F

L

D
|
D

V

V

F

F

V

A

Q

T

E
|
E

P

P

V

C

P

-

A

T

D

D

H

S

P

P

L

L

L

F

K

E

I

L

D

A

S

Q

F

V

I

V

S

V

T

T

P

P

H
|
H

I

L

G

G

A

A

A

S

T

T

K

A

E

E

A

A

Q

Q

E

D

N

R

V

A

A

G

L

T

A

D

I

V

A

A

D

E

Q

S

M

V

V

R

D

L

Y

A

L

L

A

A

K

G

G

E

V

F

I

V

R

P

Y

D

A

A

A

V

N

N

L

V

-

G

P

G

S

G

V

V

S

V

P

N

E

E

M

-

S

-

I

-

V

V

T

A

P

P

Y

W

Q

L

K

D

L

L

A

V

E

R

I

K

M

L

G

G

N

V

I

L

I

A

S

G

Q

V

I

L

S

S

S

D

S

E

P

L

L

P

S

V

K

S

V

L

T

S

I

V

E

Q

Y

V

S

R

G

G

E

E

I

L

A

A

T

A

V

E

P

E

T

V

A

E

A

V

V

L

T

R

I

L

S

S

A

A

L

L

K

R

G

G

I

L

L

F

S

S

P

A

I

V

L

I

D

E

T

D

M

A

V

V

N

T

E

F

V

V

N

N

A

A

P

P

I

A

L

L

A

A

K

A

E

E

R

R

G

G

I

V

E

T

V

A

V

E

E

I

V

C

R

K

S

A

T

S

H

E

N

S

G

P

D

N

Y

H

T

R

G

S

L

V

S

D

I

V

K

R

-

A

I

V

S

G

S

A

P

D

T

G

D

S

F

V

H

V

Q

T

I

V

S

S

G

G

S

T

V

L

F

Y

Q

G

K

P

R

Q

-

L

D

S

Y

Q

R

K

I

I

V

V

S

Q

M

I

D

N

Q

G

L

R

P

H

V

F

E

D

V

L

I

R

P

A

E

Q

P

G

I

I

M

N

I

L

Y

I

L

I

T

H

N
x
Y

Q

V

D
|
D

Q
x
R

P
|
P

G
|
G

V
x
A

V
x
L

G

G

A

K

V

I

G

G

T

T

I

L

L

L

G

G

N

T

H

A

K

G

I

V

N

N

I

I

S

Q

R

A

M

A

Q

Q

F
x
L

G

S

R

E

D

D

Y

A

P

E

G

G

G

P

K

G

A

A

I

T

S

I

M

L

I

L

G

R

V

L

D

D

N

Q

E

D

I

V

active site: N96 (= N100), R230 (= R234), D254 (= D258), E259 (= E263), H277 (= H282)
binding serine: Y458 (≠ N463), D460 (= D465), R461 (≠ Q466), P462 (= P467), G463 (= G468), A464 (≠ V469), L465 (≠ V470), L484 (≠ F489)

6plfB Crystal structure of human phgdh complexed with compound 1 (see paper)
49% identity, 56% coverage: 6:304/535 of query aligns to 2:291/292 of 6plfB

query
sites
6plfB

R

K

V

V

L

L

V

I

S

S

D

D

A

S

I

L

S

D

E

P

D

C

G

C

L

R

K

K

I

I

F

L

R

Q

E

D

A

G

G

G

F

L

E

Q

V

V

V

E

K

K

T

Q

K

N

L

L

T

-

P

-

E

-

L

L

A

I

V

A

E

E

I

L

A

Q

G

D

Y

C

D

E

G

G

L

L

V

I

I

V

R

R

S

S

G

A

T

A

K

-

V

-

T

-

K

-

D

D

I

V

L

I

K

N

G

A

A

A

K

E

R

K

L

L

K

Q

V

V

G

G

R

R

A

A

G

G

A

T

G

G

L

V

D

D

N

N

V

V

D

D

L

L

D

E

A

A

T

T

S

R

H

K

G

G

I

I

V

L

V

V

M

M

N

N

T

T

P

P

G

N

G

G

N

N

T

S

I

L

T

S

T

A

A

A

E

E

H

L

T

T

M

C

S

G

L

M

L

I

M

M

S

C

M

L

A

A

R

R

R

Q

I

I

P

P

Q

Q

A

A

N

T

A

A

S

S

N

M

R

K

S

D

G

G

K

K

W

W

E

E

K

R

S

K

K

K

F

F

M

M

G

G

V

T

E

E

L

L

F

N

Q

G

K

K

T

T

L

L

G

G

I

I

I

L

G

G

M

L

G

G

K
x
R

I

I

G

G

Q

R

H

E

L

V

T

A

Q

T

I

R

A

M

K

Q

G

S

L

F

S

G

M

M

H

K

V

T

I

I

A

G

F
x
Y

D
|
D

P
|
P

Y

I

L
x
I

T

S

P

P

E

E

V

V

A

S

E

A

K

S

S

F

G

G

V

V

T

Q

P

Q

V

L

S

P

L
|
L

D

E

E

E

I

I

Y

W

Q

P

K

L

S

C

D

D

F

F

I

I

S

T

V

V

H

H

T
|
T

P
|
P

L

L

N

L

A

P

E
x
S

T

T

N

G

L
|
L

I

L

N

N

K

D

T

N

T

T

I

F

A

A

K

Q

M

C

K

K

G

G

V

V

Y

R

I

V

V

V

N

N

C

C

A

A

R

R

G

G

I

I

V

V

N

D

E

E

T

G

D

A

L

L

A

L

E

R

A

A

L

L

L

Q

S

S

G

G

H

Q

V

C

A

A

G

G

A

A

F

L

D

D

V

V

F

F

V

T

Q

E

E

E

P

P

V

-

P

P

A

R

D

D

H

R

P

A

L

L

L

V

K

D

I

H

D

E

S

N

F

V

I

I

S

S

T

C

P

P

H

H

I

L

G

G

A

A

A

S

T

T

K

K

E

E

A

A

Q

Q

E

S

N

R

V

C

A

G

L

E

A

E

I

I

A

A

D

V

Q

Q

M

F

V

V

D

D

binding 4-{(1S)-1-[(5-chloro-6-{[(5S)-2-oxo-1,3-oxazolidin-5-yl]methoxy}-1H-indole-2-carbonyl)amino]-2-hydroxyethyl}benzoic acid: R141 (≠ K153), Y160 (≠ F172), D161 (= D173), P162 (= P174), I164 (≠ L176), L179 (= L191), T193 (= T205), P194 (= P206), S198 (≠ E210), L202 (= L214)

3ddnB Crystal structure of hydroxypyruvic acid phosphate bound d-3- phosphoglycerate dehydrogenase in mycobacterium tuberculosis (see paper)
36% identity, 86% coverage: 47:508/535 of query aligns to 44:502/525 of 3ddnB

query
sites
3ddnB

D

D

G

A

L

L

V

L

I

V

R

R

S

S

G

A

T

T

K

T

V

V

T

D

K

A

D

E

I

V

L

L

K

A

G

A

A

A

K

P

R

K

L

L

K

K

V

I

V

V

G

A

R
|
R

A

A

G

G

A
x
V

G

G

L

L

D

D

N

N

V

V

D

D

L

V

D

D

A

A

T

T

S

A

H

R

G

G

I

V

V

L

V

V

M

V

N

N

T

A

P

P

G

T

G

S

N
|
N

T

I

I

H

T

S

T

A

A

A

E

E

H

H

T

A

M

L

S

A

L

L

M

L

S

A

M

A

A

S

R

R

R

Q

I

I

P

P

Q

A

A

A

N

D

A

A

S

S

N

L

R

R

S

E

G

H

K

T

W

W

E

K

K

R

S

S

K

S

F

F

M

S

G

G

V

T

E

E

L

I

F

F

Q

G

K

K

T

T

L

V

G

G

I

V

G

G

M

L

G

G

K

R

I

I

G

G

Q

Q

H

L

L

V

T

A

Q

Q

I

R

A

I

K

A

G

A

L

F

S

G

M

A

H

Y

V

V

I

V

A

A

F

Y

D

D

P

P

Y

Y

L

V

T

S

P

P

E

A

V

R

A

A

E

A

K

Q

S

L

G

G

V

I

T

E

P

L

V

L

S

S

L

L

D

D

E

D

I

L

Y

L

Q

A

K

R

S

A

D

D

F

F

I

I

S

S

V

V

H

H

T

L

P

P

L

K

N

T

A

P

E

E

T

T

T

A

N

G

L

L

I

I

N

D

K

K

T

E

T

A

I

L

A

A

K

K

M

T

K

K

K

P

G

G

V

V

Y

I

I

I

V

V

N

N

C

A

A

A

R
|
R

G

G

I

L

V

V

N

D

E

E

T

A

D

A

L

L

A

A

E

D

A

A

L

I

L

T

S

G

G

G

H

H

V

V

A

R

G

A

A

A

A

G

F

L

D
|
D

V

V

F

F

V

A

Q

T

E
|
E

P

P

V

C

P

-

A

T

D

D

H

S

P

P

L

L

L

F

K

E

I

L

D

A

S

Q

F

V

I

V

S

V

T

T

P

P

H
|
H

I

L

G

G

A
|
A

A

S

T

T

K

A

E

E

A

A

Q
|
Q

E

D

N

R

V

A

A

G

L

T

A

D

I

V

A

A

D

E

Q

S

M

V

V

R

D

L

Y

A

L

L

A

A

K

G

G

E

V

F

I

V

R

P

Y

D

A

A

A

V

N

N

L

V

-

G

P

G

S

G

V

V

S

V

P

N

E

E

M

-

S

-

I

-

V

V

T

A

P

P

Y

W

Q

L

K

D

L

L

A

V

E

R

I

K

M

L

G

G

N

V

I

L

I

A

S

G

Q

V

I

L

S

S

S

D

S

E

P

L

L

P

S

V

K

S

V

L

T

S

I

V

E

Q

Y

V

S

R

G

G

E

E

I

L

A

A

T

A

V

E

P

E

T

V

A

E

A

V

V

L

T

R

I

L

S

S

A

A

L

L

K

R

G

G

I

L

L

F

S

S

P

A

I

V

L

I

D

E

T

-

M

-

V

V

N

T

E

F

V

V

N

N

A

A

P

P

I

A

L

L

A

A

K

A

E

E

R

R

G

G

I

V

E

T

V

A

V

E

E

I

V

C

R

K

S

A

T

S

H

E

N

S

G

P

D

N

Y

H

T

R

G

S

L

V

S

D

I

V

K

R

-

A

I

V

S

G

S

A

P

D

T

G

D

S

F

V

H

V

Q

T

I

V

S

S

G

G

S

T

V

L

F

Y

Q

G

K

P

R

Q

-

L

D

S

Y

Q

R

K

I

I

V

V

S

Q

M

I

D

N

Q

G

L

R

P

H

V

F

E

D

V

L

I

R

P

A

E

Q

P

G

I

I

M

N

I

L

Y

I

L

I

T

H

N

Y

Q

V

D

D

Q

R

P

P

G

G

V

A

V

L

G

G

A

K

V

I

G

G

T

T

I

L

L

L

G

G

N

T

H

A

K

G

I

V

N

N

I

I

S

Q

R

A

M

A

Q

Q

F

L

G

S

R

E

D

D

Y

A

P

E

G

G

G

P

K

G

A

A

I

T

S

I

M

L

I

L

G

R

V

L

D

D

N

Q

E

D

I

V

active site: N97 (= N100), R231 (= R234), D255 (= D258), E260 (= E263), H278 (= H282)
binding 2-oxo-3-(phosphonooxy)propanoic acid: R70 (= R73), V73 (≠ A76), N97 (= N100), A281 (= A285), Q287 (= Q291)

7cvpA The crystal structure of human phgdh from biortus.
48% identity, 49% coverage: 42:304/535 of query aligns to 18:254/254 of 7cvpA

query
sites
7cvpA

E

E

I

L

A

Q

G

D

Y

C

D

E

G

G

L

L

V

I

I

V

R

R

S

S

G

-

T

-

K

-

V

V

T

T

K

A

D

D

I

V

L

I

K

-

G

-

A

-

K

-

R

-

L

-

K

-

V

V

G

G

R

R

A

A

G

G

A

T

G

-

L

-

D

-

N

-

V

-

D

-

L

-

D

-

A

-

T

-

S

-

H

-

G

-

I

-

V

L

V

V

M

M

N

N

T

T

P

P

G

N

G

G

N

N

T

S

I

L

T

S

T

A

A

A

E

E

H

L

T

T

M

C

S

G

L

M

L

I

M

M

S

C

M

L

A

A

R

R

R

Q

I

I

P

P

Q

Q

A

A

N

T

A

A

S

S

N

M

R

K

S

D

G

G

K

K