Comparing WP_015798950.1 NCBI__GCF_000023265.1:WP_015798950.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 11 hits to proteins with known functional sites (download)
3h0rH Structure of tRNA-dependent amidotransferase gatcab from aquifex aeolicus (see paper)
51% identity, 63% coverage: 10:315/483 of query aligns to 3:304/410 of 3h0rH
3h0rE Structure of tRNA-dependent amidotransferase gatcab from aquifex aeolicus (see paper)
51% identity, 63% coverage: 10:315/483 of query aligns to 3:304/410 of 3h0rE
3h0rB Structure of tRNA-dependent amidotransferase gatcab from aquifex aeolicus (see paper)
51% identity, 63% coverage: 10:315/483 of query aligns to 3:304/410 of 3h0rB
3h0lB Structure of tRNA-dependent amidotransferase gatcab from aquifex aeolicus (see paper)
51% identity, 63% coverage: 10:315/483 of query aligns to 3:304/410 of 3h0lB
3al0B Crystal structure of the glutamine transamidosome from thermotoga maritima in the glutamylation state. (see paper)
38% identity, 95% coverage: 13:472/483 of query aligns to 6:475/482 of 3al0B
3ip4B The high resolution structure of gatcab (see paper)
38% identity, 96% coverage: 10:475/483 of query aligns to 3:475/482 of 3ip4B
3kfuF Crystal structure of the transamidosome (see paper)
47% identity, 75% coverage: 10:373/483 of query aligns to 2:353/447 of 3kfuF
Sites not aligning to the query:
2g5iB Structure of tRNA-dependent amidotransferase gatcab complexed with adp-alf4 (see paper)
42% identity, 80% coverage: 10:394/483 of query aligns to 2:389/410 of 2g5iB
2df4B Structure of tRNA-dependent amidotransferase gatcab complexed with mn2+ (see paper)
42% identity, 80% coverage: 10:394/483 of query aligns to 2:389/399 of 2df4B
4wj3B Crystal structure of the asparagine transamidosome from pseudomonas aeruginosa (see paper)
47% identity, 66% coverage: 10:328/483 of query aligns to 1:323/456 of 4wj3B
Sites not aligning to the query:
2d6fD Crystal structure of glu-tRNA(gln) amidotransferase in the complex with tRNA(gln) (see paper)
25% identity, 49% coverage: 12:247/483 of query aligns to 8:253/522 of 2d6fD
Sites not aligning to the query:
>WP_015798950.1 NCBI__GCF_000023265.1:WP_015798950.1
MRWPWLERGFELVIGLEVHVELRTATKLFCGCANAFGQAPNTNVCPVCLGLPGSLPVVNA
RCVEIAMAVGAALGSRVQSSQFHRKNYFYPDMPKNYQISQYDVPICAGGAVELDGGRRIR
IERAHLEEDTGKLTHVGGGGRIESAERTLIDYNRAGVPLLEIVSAPDLRDPDEVRAYVSE
LRAIVVAVGASDGRMEEGSLRVDANVSVRPIGSEELRTRVELKNLNSLRSLQRAIAAEAM
RQIESYERGEPVVQQTRHWDEARGATVGLRTKEAAEDYRYFPEPDLPPLVVDQAAVEAMS
DLLVASLPRTRRARLADAAVSPDVRETAVSEELWAYTRVALDAGLPATLVARRVANEIAQ
VRSQGVEIDPARVVEVLKAEADGLLLAQQVREVLRIAAERSDPIEALVAAVAGGREGLEA
EAARLAEEVAASAPEEWGRFVAGDAKIAGFLVGQVVRRSGGKVPGQLARRALDERASSER
SST
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory