Comparing WP_015888140.1 NCBI__GCF_000018545.1:WP_015888140.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 4 hits to proteins with known functional sites (download)
7cagA Mycobacterium smegmatis lpqy-sugabc complex in the catalytic intermediate state (see paper)
33% identity, 91% coverage: 23:301/307 of query aligns to 5:277/285 of 7cagA
P94529 Arabinooligosaccharides transport system permease protein AraP from Bacillus subtilis (strain 168) (see paper)
32% identity, 86% coverage: 22:285/307 of query aligns to 26:288/313 of P94529
P02916 Maltose/maltodextrin transport system permease protein MalF from Escherichia coli (strain K12) (see 4 papers)
28% identity, 77% coverage: 69:305/307 of query aligns to 259:511/514 of P02916
4ki0F Crystal structure of the maltose-binding protein/maltose transporter complex in an outward-facing conformation bound to maltohexaose (see paper)
27% identity, 80% coverage: 51:296/307 of query aligns to 225:487/490 of 4ki0F
>WP_015888140.1 NCBI__GCF_000018545.1:WP_015888140.1
MLKSDKDTSAKSLRRGGGLEHWAERHLRYLMLAPTVLILLALTIFPSIYMFYAAVHRISP
NPDLPWEFVGVGNFARLLSDPQFHVALRNTVVFTLVAVALEFLLGLGLALLLDRFIRRLS
FLKTVLMIPMMLPPIAVAITWKLIYEPQFGVLNEIMFLLGLPVQAWAGDVNLAMFSIIVA
DVWQWTPFVFLLMLAGLASLPVEPYEAAALDGASSWRQFWDLTLPFLKPVIAIALLLRVM
DALRLFDLVFILTGGGPADRTKVLSLYIYQVAYRFADPGYAAAISLFVLFVTIVLSTWFM
KRMRLAE
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory