SitesBLAST

Q0QLF2 Nicotinate dehydrogenase large molybdopterin subunit; NDH; Nicotinic acid hydroxylase large molybdopterin subunit; NAH; EC 1.17.1.5 from Eubacterium barkeri (Clostridium barkeri) (see 2 papers)
24% identity, 49% coverage: 205:564/737 of query aligns to 3:382/425 of Q0QLF2

query
sites
Q0QLF2

N
x
K

D
|
D

W
x
Y

K
x
Q

L
x
V

I
x
L

G
|
G

N
x
K

P
x
N

E
x
K

L
x
V

K
|
K

R

-

F
x
V

D
|
D

S
|
S

A
x
L

R
x
E

K
|
K

A
x
V

N
x
M

G
|
G

T
|
T

E
x
A

Q
x
K

Y
x
F

T
x
A

I
x
A

D
|
D

V
x
Y

K
x
S

L
x
F

P
|
P

G
x
D

M
|
M

L
|
L

T
x
Y

A
|
A

V
x
G

M
x
V

I
x
F

H
x
R

P
x
S

P
x
T

L
x
V

F
x
P

G
x
H

A
|
A

K
x
R

A
x
I

K
x
V

S
|
S

F
x
L

D
|
D

A
x
L

S
|
S

A
x
K

A
|
A

R
|
R

A
|
A

-
x
I

-
x
D

-
x
G

V
|
V

K
x
E

D
x
A

V
|
V

V
x
L

D
|
D

V
x
Y

V
x
H

E
x
A

T
x
I

P
|
P

-
x
G

-
x
K

-
x
N

-
x
R

R
x
F

G
|
G

I
|
I

A
x
I

V
x
I

V
x
K

G
x
D

E
|
E

H
x
P

M
x
C

W
x
L

A
x
V

A
x
D

I
x
D

K
|
K

G
x
V

R
|
R

-
x
R

-
x
Y

-
x
G

-
x
D

-
x
A

-
x
I

-
x
A

-
x
V

-
x
A

-
x
Q

-
x
T

-
x
P

-
x
D

-
x
L

-
x
V

-
x
Q

-
x
E

-
x
A

-
x
L

E
x
D

A
|
A

V
x
I

T
|
T

V
x
I

E
|
E

W
x
Y

D
x
E

E
|
E

A

-

G

-

A

-

E

-

K

-

R

-

G

-

T
x
L

Q
x
E

Q
x
G

I
|
I

L
x
F

S
x
T

M
|
M

Y
x
E

R
|
R

D
x
A

L
|
L

V
x
E

K
x
E

K
x
D

P
x
S

P
|
P

A
|
A

A
x
I

V
x
H

A
x
G

R
x
D

K
x
T

D
x
N

-
x
I

-
x
H

-
x
Q

-
x
V

-
x
K

-
x
H

-
x
L

-
x
E

-
x
Y

G
|
G

D
|
D

A
x
V

E
x
D

A
|
A

E
x
A

F
|
F

A
x
K

K
x
Q

A
x
C

A
x
D

K
x
I

V
|
V

I
x
V

E
|
E

A
x
D

S
x
T

F
x
Y

E
x
S

F
x
T

P
x
H

Y
x
R

L
|
L

A
x
T

H
|
H

A
x
M

A
x
F

M
x
I

E
|
E

P
|
P

L
x
D

N
x
A

A
x
G

V
|
V

A
x
S

R
x
Y

M
x
Y

N
x
D

D
x
N

D
x
E

G
|
G

T
x
M

L
|
L

E
x
T

I
x
V

W
x
V

G
x
V

G
x
S

H
x
T

Q
|
Q

F

-

T
x
N

D
x
P

V
x
H

Y
|
Y

Q
x
D

K
x
R

L

-

A

-

G
|
G

D
x
E

V
|
V

A
|
A

G
|
G

V
x
M

A
x
L

P
x
A

-
x
L

-
x
P

-
x
N

E
x
S

K
|
K

V
|
V

R
|
R

L
x
I

H
x
I

V
x
Q

M
x
A

K
x
T

T
|
T

G
|
G

S
x
G

F
|
F

G
|
G

R
x
G

R
x
K

A
x
L

V

-

F

-

D

-

G

-

D
|
D

V
x
L

V
x
S

V
|
V

E
x
Q

A
x
C

V
x
H

H
x
C

V
x
A

A
x
L

K
x
L

A
x
T

I
x
Y

G
x
H

F
x
T

R
x
K

A
x
K

P
|
P

V
|
V

K
|
K

L
x
M

Q
x
V

W
x
R

T
x
S

R
|
R

E
|
E

D
x
E

D
x
S

M
x
T

R
x
T

G
x
V

G
x
S

R
x
S

Y
x
K

R
|
R

P
x
H

A
x
P

Y
x
M

V
x
T

H
x
M

S
x
H

L
x
C

K
|
K

A
x
T

G
|
G

I
x
A

D
x
T

D
x
K

G
x
D

G
|
G

K
x
R

L
|
L

V
x
Q

A
|
A

W
x
V

T
x
Q

D
x
V

H
x
E

I
x
M

V
x
F

G
|
G

Q
x
D

S
x
T

I

-

V

-

A

-

N

-

T
x
G

A
|
A

F
x
Y

E
x
A

G
x
S

M
x
Y

V
x
G

K
x
P

N
x
A

G
x
V

V
x
I

D
x
T

P
x
R

T
x
A

S
x
T

V
|
V

E
x
H

G
x
C

A
x
M

S
x
G

N

-

L

-

P
|
P

Y
|
Y

A
x
V

I
x
V

P
|
P

N
|
N

Q
x
V

A
x
R

V
|
V

G
x
D

L
x
A

T
x
K

S
x
F

T
x
V

E
x
Y

V
x
T

G
x
N

V
x
N

P
|
P

V
x
M

L
x
S

-
x
G

W
x
A

W
x
F

R
|
R

S
x
G

V
x
F

G
|
G

S
x
V

T
x
P

H
x
Q

T
x
A

A
x
S

F
x
V

A
x
C

A
x
H

E
|
E

T
x
G

F
x
Q

L
x
M

D
x
N

E
x
A

V
x
L

A
|
A

E
x
K

A
|
A

A
x
L

G
|
G

R
x
M

D
|
D

P
|
P

V
x
I

E
x
D

F
x
I

R
|
R

L
x
I

Q208 (= Q381) binding Se-Mo-molybdopterin cytosine dinucleotide
GFG 238:240 (≠ SFG 411:413) binding Se-Mo-molybdopterin cytosine dinucleotide

Sites not aligning to the query:

1 modified: Initiator methionine, Removed
2:425 modified: mature protein, Nicotinate dehydrogenase large molybdopterin subunit

8uemA The cryoem structure of the high affinity carbon monoxide dehydrogenase from mycobacterium smegmatis (see paper)
24% identity, 49% coverage: 205:567/737 of query aligns to 1:399/783 of 8uemA

query
sites
8uemA

N

N

D

D

W

A

K

K

L

P

I

C

G

G

N

H

P

G

E

R

L

M

K

L

R

R

F

K

D

E

S

D

A

P

R

R

K

F

A

I

N

R

G

G

T

R

E

G

Q

N

Y

Y

T

V

I

D

D

D

V

V

K

K

L

L

P

P

G

G

M

M

L

L

T

H

A

L

V

A

M

I

I

L

H

R

P

S

P

P

L

Y

F

A

G

H

A

A

K

T

A

I

K

N

S

S

F

I

D

D

A

V

S

T

A

A

R

Q

A

A

V

H

K

P

D

K

V

V

V

K

D

A

V

V

E

T

-

G

-

A

-

D

-

L

T

A

P

A

R

K

G

G

I

L

A

A

-

W

-

M

-

P

V

T

V

L

G

S

E

N

H

D

M

V

W

Q

A

A

A

V

I

L

-

A

-

T

-

D

-

K

-

V

-

R

-

F

K

Q

G

G

R

Q

E

E

A

V

V

A

T

F

V

V

E

V

W

A

D

E

E

D

A

R

G

Y

A

S

E

A

K

R

R

D

G

A

T

L

Q

E

Q

L

I

I

L

D

S

V

M

D

Y

Y

R

E

D

P

L

L

-

D

-

P

-

V

-

I

-

D

-

A

-

R

-

H

V

A

K

L

K

D

P

P

P

G

A

A

A

P

V

V

A

I

R

R

K

T

D

D

-

L

-

D

-

G

-

K

-

T

-

D

-

N

-

H

-

C

-

F

-

D

-

W

-

E

-

T

G

G

D

D

A

A

-

A

-

T

E

D

A

A

E

V

F

F

A

A

K

K

A

A

A

D

K

V

V

V

I

V

E

K

A

Q

S

E

F

M

E

V

F

Y

P

P

Y

R

L

V

A

H

H

P

A

A

A

P

M

M

E

E

P

T

L

C

N

G

A

A

V

V

A

A

R

D

M

L

N

D

D

P

-

V

D

T

G

R

T

K

L

L

E

T

I

L

W

W

G

S

G

T

H

T

Q
|
Q

F

A

T

P

D

H

V

A

Y

H

Q

R

K

T

L

L

A

Y

G

A

D

L

V

V

A

A

G

G

V

L

A

P

P

E

E

H

K

K

V

I

R

R

L

V

H

I

V

S

M

P

K

D

T

I

G

G

S
x
G

F
|
F

G
|
G

R

N

R

K

A

V

-

P

V

I

F

Y

D

P

G

G

D

Y

V

V

V

C

V

A

E

-

A

-

V

-

H

-

V

I

A

V

K

G

A

S

I

L

G

L

F

L

R

G

A

K

P

P

V

V

K

K

L

W

Q

M

W

E

T

D

R

R

E

S

D

E

D

N

M

L

R

T

G

S

G

T

R

G

Y

F

R

A

P

R

A

D

Y

Y

V

I

H

M

S

V

L

G

K

E

A

I

G

A

I

A

D

T

D

R

G

D

G

G

K

K

L

I

V

L

A

A

W

I

T

R

D

S

H

N

I

V

V

L

G

A

Q

D

S

-

I

-

V

-

A

-

N

H

T

G

A

A

F

F

E

N

G

G

M

T

V

A

K

A

N

P

G

V

V

K

D

Y

P

P

T

A

S

G

V

F

E

F

G

G

A

V

S

F

N

T

L

G

P

S

Y

Y

A

D

I

I

P

E

N

A

Q

A

A

Y

V

C

G

H

L

M

T

T

S

A

T

V

E

Y

V

T

G

N

V

K

P

A

-

P

-

G

V

V

L
x
A

W
x
Y

W
x
A

R
x
C

S

S

V

F

G

R

S

I

T

T

H

E

T

A

A

V

F

Y

A

F

A

V

E

E

T

R

F

L

L

V

D

D

E

C

V

L

A

A

E

Y

A

E

A

L

G

K

R

M

D

D

P

P

V

A

E

Q

F

L

R

R

L

L

S

Q

M

N

L

L

binding cu(i)-s-mo(iv)(=o)oh cluster: Q217 (= Q381), F248 (= F412), G249 (= G413), A362 (≠ L530), Y363 (≠ W531), A364 (≠ W532), C365 (≠ R533)
binding pterin cytosine dinucleotide: G247 (≠ S411), F248 (= F412), A364 (≠ W532)

Sites not aligning to the query:

binding cu(i)-s-mo(iv)(=o)oh cluster: 539, 540, 736
binding pterin cytosine dinucleotide: 499, 500, 501, 503, 506, 538, 539, 540, 541, 543, 544, 659, 661, 663, 667, 668, 671, 732, 733, 734, 735, 736

5y6qC Crystal structure of an aldehyde oxidase from methylobacillus sp. Ky4400 (see paper)
28% identity, 33% coverage: 322:564/737 of query aligns to 146:375/748 of 5y6qC

query
sites
5y6qC

K

K

P

P

P

M

A

S

A

A

V

Q

A

D

R

I

K

D

D

L

G

G

D

D

A

A

E

A

A

T

E

A

F

M

A

H

K

S

A

A

A

E

K

V

V

R

I

I

E

N

A

Q

S

R

F

Y

E

T

F

T

P

P

Y

R

L

E

A

Y

H

N

A

M

A

P

M

M

E

E

P

P

L

H

N

A

A

C

V

I

A

A

R

H

M

W

N

H

D

E

D

-

G

G

T

Q

L

I

E

T

I

V

W

W

G

E

G

P

H

S

Q
|
Q

F

W

T

V

D

A

V

G

Y

A

Q

Q

K

V

L

E

A

I

G

A

D

E

V

W

A

L

G

G

V

I

A

E

P

T

E

E

K

K

V

V

R

R

L

I

H

I

V

S

M

P

K

Y

T

V

G

G

G
|
G

S
x
G

F
|
F

G

G

R

S

R

K

A
x
P

V

V

F

P

D

Y

G

T

D

H

V

V

V

A

V

L

E

A

A

S

V

V

H

-

V

-

A

-

K

A

A

S

I

R

G

A

F

L

R

N

A

R

P

P

V

V

K

K

L

V

Q

S

W

L

T

T

R

R

E

P

D

Q

D

T

M

F

R

T

G

G

G

L

R

G

Y

G

R

R

P

P

A

A

Y

T

V

S

H

Q

S

Q

L

L

K

E

A

L

G

G

I

A

D

S

D

R

G

D

G

G

K

K

L

I

V

E

A

A

W

-

T

-

D

-

H

-

I

I

V

I

G

Q

Q

R

S

S

I

F

V

S

A

E

N

T

T

S

A

L

F

I

E

D

G

V

M

F

V
x
A

K

E

N

N

G

C

V

S

D

K

P
x
V

T

T

S

A

V

R

E

M

G

-

A

-

S

-

N

-

L

-

P

-

Y

Y

A

A

I

V

P

S

N

N

-

V

-

S

-

A

-

Q

Q

H

A

Q

V

V

G

R

L

L

T

I

S

N

T

T

E

-

V

-

G

-

V

V

P

T

V

P

L

G

W

W

W

M

R
|
R

S

A

V

P

G

G

S

E

T

N

H

P

T

S

A

A

F

F

A

G

A

L

E

E

T

V

F

A

L

M

D

D

E

E

V

L

A

A

E

Y

A

A

A

L

G

D

R

I

D

D

P

P

V

L

E

E

F

L

R

R

L

L

active site: Q204 (= Q381), P239 (≠ A416), A310 (≠ V494), V316 (≠ P500), R344 (= R533)
binding pterin cytosine dinucleotide: G233 (= G410), G234 (≠ S411), F235 (= F412)

Sites not aligning to the query:

active site: 715, 716
binding pterin cytosine dinucleotide: 461, 462, 463, 464, 468, 500, 502, 503, 504, 505, 638, 640, 641, 648, 711, 713, 714, 715

1rm6A Structure of 4-hydroxybenzoyl-coa reductase from thauera aromatica (see paper)
32% identity, 19% coverage: 594:732/737 of query aligns to 601:746/761 of 1rm6A

query
sites
1rm6A

R

K

F

I

R

R

G

G

V

S

A

A

L

I

A

G

E

A

S

T

F

M

G

G

-

F

S

C

V

Y

V

A

A

A

E

Q

I

V

A

V

E

E

V

A

S

S

T

V

D

D

G

E

-

I

N

T

G

G

Q

K

I

V

K

T

V

A

E

H

R

K

V

V

V

W

A

V

A

A

V

V

D

D

C

V

G

G

L

K

A

A

V
x
L

N
|
N

P

P

D

L

Q

A

V
|
V

R

E

A

G

Q
|
Q

V

T

E

Q

G

G

I

V

G

W

F

M

G

G

L

M

S

G

A

Q

I

A

L

L

G

S

E

E

I

T

S

V

L

Y

T

D

D

N

G

G

Q

R

V

M

D

V

Q

H

G

G

N

N

F

I

D

L

L

D

Y

Y

T

R

P

V

L

P

R

T

I

I

D

V

A

E

M

S

P

P

A

D

V

I

E

E

V

V

H

I

I

I

V

V

A

E

S

S

A

M

N

D

P

P

P

N

S

G

G

P

I

F

G

G

-

A

-
x
K

-
x
E

-
x
A

-
x
S

E
|
E

P
x
G

G

M

V

L

P

A

P

G

I

F

G

L

P

P

A

A

V

I

A

H

N

E

A

A

A

V

Y

Y

K

E

A

A

L

V

G

G

N

V

R

R

I

A

R

T

V

D

M

F

P

P

F

L

A

S

active site: E718 (= E704), G719 (≠ P705)
binding (molybdopterin-cytosine dinucleotide-s,s)-dioxo-aqua-molybdenum(v): L646 (≠ V637), N647 (= N638), V651 (= V642), Q654 (= Q645), K714 (vs. gap), E715 (vs. gap), A716 (vs. gap), S717 (vs. gap), E718 (= E704)

Sites not aligning to the query:

active site: 206, 241, 318, 322, 350
binding (molybdopterin-cytosine dinucleotide-s,s)-dioxo-aqua-molybdenum(v): 235, 236, 237, 238, 350, 473, 474, 475, 476, 513, 514, 515, 517, 518

O33819 4-hydroxybenzoyl-CoA reductase subunit alpha; 4-HBCR subunit alpha; EC 1.1.7.1 from Thauera aromatica (see paper)
32% identity, 19% coverage: 594:732/737 of query aligns to 609:754/769 of O33819

query
sites
O33819

R

K

F

I

R

R

G

G

V

S

A

A

L

I

A

G

E

A

S

T

F

M

G

G

-

F

S

C

V

Y

V

A

A

A

E

Q

I

V

A

V

E

E

V

A

S

S

T

V

D

D

G

E

-

I

N

T

G

G

Q

K

I

V

K

T

V

A

E

H

R

K

V

V

V

W

A

V

A

A

V

V

D

D

C
x
V

G
|
G

L
x
K

A
|
A

V
x
L

N
|
N

P

P

D

L

Q

A

V

V

R

E

A

G

Q

Q

V

T

E

Q

G

G

I

V

G

W

F

M

G

G

L

M

S

G

A

Q

I

A

L

L

G

S

E

E

I

T

S

V

L

Y

T

D

D

N

G

G

Q

R

V

M

D

V

Q

H

G

G

N

N

F

I

D

L

L

D

Y

Y

T

R

P

V

L

P

R

T

I

I

D

V

A

E

M

S

P

P

A

D

V

I

E

E

V

V

H

I

I

I

V

V

A

E

S

S

A

M

N

D

P

P

P

N

S

G

G

P

I

F

G

G

-

A

-
x
K

-
x
E

-
x
A

-
x
S

E

E

P

G

G

M

V

L

P

A

P

G

I

F

G

L

P

P

A

A

V

I

A

H

N

E

A

A

A

V

Y

Y

K

E

A

A

L

V

G

G

N

V

R

R

I

A

R

T

V

D

M

F

P

P

F

L

A

S

VGKALN 650:655 (≠ CGLAVN 633:638) binding Mo-molybdopterin cytosine dinucleotide
KEAS 722:725 (vs. gap) binding Mo-molybdopterin cytosine dinucleotide

Sites not aligning to the query:

214 binding Mo-molybdopterin cytosine dinucleotide
244:245 binding Mo-molybdopterin cytosine dinucleotide
522:526 binding Mo-molybdopterin cytosine dinucleotide

1t3qB Crystal structure of quinoline 2-oxidoreductase from pseudomonas putida 86 (see paper)
22% identity, 48% coverage: 208:563/737 of query aligns to 12:401/786 of 1t3qB

query
sites
1t3qB

K

K

L

S

I

I

G

G

N

T

P

S

E

V

L

L

K

R

R

R

F

E

D

D

S

T

A

-

R

R

K

L

A

L

N

T

G

G

T

R

E

G

Q

R

Y

Y

T

I

I

A

D

D

V

L

K

V

L

L

P

S

G

G

M

M

L

L

T

H

A

V

V

A

M

S

I

L

H

R

P

S

P

P

L

F

F

A

G

H

A

A

K

R

A

I

K

V

S

S

F

I

D

D

A

V

S

A

A

D

A

A

R

Q

A

A

V

L

K

P

D

G

V

V

-

E

-

L

-

V

-

W

-

C

-

G

V

A

D

D

V

V

V

A

E

E

T

L

P

S

R

Q

G

G

I

I

A

V

-

A

-

T

-

M

-

Q

-

V

-

E

-

G

-

F

-

Q

-

T

-

I

-

Q

-

P

-

L

-

A

-

N

-

G

-

V

-

T

-

R

V

F

V

V

G

G

E

E

H

I

M

V

W

A

A

V

I

V

K

A

G

S

R

S

E

R

A

A

V

I

-

A

-

E

-

D

-

A

-

Q

-

L

-

I

T

Q

V

V

E

E

W

Y

D

E

E

E

A

L

G

P

A

A

E

V

K

T

R

-

G

G

T

I

Q

E

Q

A

I

A

L

L

S

E

M

G

Y

E

R

A

D

R

L

A

V

N

K

D

K

T

P

L

P

A

A

G

A

N

V

V

A

V

R

S

K

R

D

T

G

S

D

R

A

A

E

R

A

D

E

E

-

L

-

A

-

P

-

I

F

F

A

A

K

S

A

S

A

A

K

G

V

V

I

V

E

R

A

G

S

Q

F

F

E

S

F

C

P

G

Y

R

L

V

A

S

H

A

A

C

A

P

M

M

E

E

P

T

L

R

N

G

A

A

V

V

A

A

R

Q

M

Y

N

E

-

W

D

T

G

Q

T

Q

L

L

E

I

I

L

W

W

G

T

G

A

H

T

Q
|
Q

F

M

T

P

D

S

V

F

Y

V

Q

R

K

T

L

M

A

V

G

A

D

M

V

F

A

C

G

A

V

I

A

P

P

E

E

H

K

L

V

I

R

E

L

V

H

R

V

V

M

P

K

D

T

V

G

G

S
x
G

F
|
F

G

G

R

Q

R

K

A
|
A

V

H

F

L

D

H

G

P

D

E

V

E

V

L

E

V

A

C

V

L

H

-

V

L

A

S

K

R

A

A

I

L

G

G

F

-

R

-

A

R

P

P

V

V

K

R

L

W

Q

I

W

E

T

D

R

R

E

Q

D

E

D

N

M

F

R

L

G

G

G

A

R

T

Y

H

R

A

P

K

A

Q

Y

Q

V

R

H

N

S

E

L

M

K

G

A

L

G

A

I

F

D

D

D

G

G

D

G

G

K

R

L

F

V

L

A

A

W

L

T

E

D

N

H

R

-

S

I

I

V

T

G

D

Q

G

S

G

I

A

V

Y

A

N

N

N

T

L

A

P

F

W

E

T

G

Q

M

L

V

V

K
x
E

N

S

G

H

V

V

D

G

P

N

T

A

S
x
V

V

I

E

L

G

G

A

V

S

Y

N

K

L

V

P

P

Y

-

A

A

I

V

P

S

N

E

Q

E

A

S

V

I

G

A

L

V

T

A

S

T

T

N

E

K

V

-

G

-

V

C

P

P

V

I

L

G

W

A

W

Y

R
|
R

S

G

V

V

G

G

S

F

T

T

H

A

T

G

A

Q

F

I

A

A

A

R

E

E

T

T

F

L

L

I

D

D

E

R

V

A

A

A

E

R

A

Q

A

L

G

G

R

L

D

S

P

P

V

F

E

E

F

I

R

R

active site: Q224 (= Q381), A259 (= A416), E336 (≠ K495), V343 (≠ S502), R371 (= R533)
binding pterin cytosine dinucleotide: G254 (≠ S411), F255 (= F412), R371 (= R533)

Sites not aligning to the query:

active site: 743, 744
binding pterin cytosine dinucleotide: 506, 507, 508, 510, 513, 545, 547, 549, 550, 666, 670, 674, 675, 678, 739, 740, 741, 742

3hrdB Crystal structure of nicotinate dehydrogenase (see paper)
32% identity, 18% coverage: 603:731/737 of query aligns to 183:316/330 of 3hrdB

query
sites
3hrdB

S

S

F

Y

G

A

S

T

V

T

V

I

A

A

E

E

I

V

A

-

E

E

V

V

S

D

T

T

D

E

G

-

N

T

G

G

Q

E

I

V

K

D

V

V

E

L

R

K

V

V

A

S

A

A

V

H

D

D

C

V

G

G

L

T

A

P

V
x
I

N
|
N

P

R

D

S

Q
x
M

V
|
V

R

E

A

G

Q
|
Q

V

I

E

E

G

G

I

V

G

T

F

M

G

G

L

Q

S

G

A

F

I

V

L

L

G

M

E

E

I

I

S

E

L

V

T

N

-

T

-

K

D

N

G

G

Q

A

V

I

D

K

Q

N

G

P

N

S

F

M

D

S

L

K

Y

Y

T

I

P

I

L

P

R

S

I

N

D

R

A

D

M

V

P

P

A

E

V

I

E

H

V

S

H

I

I

L

V

V

A

E

S

S

A

E

N

G

P

G

P

P

-

G

-

P

-

F

-

G

-

A

S
x
K

G
|
G

I
x
V

G
|
G

E
|
E

P
|
P

G

A

V

L

P

I

P

P

I

M

G

I

P

P

A

A

V

V

A

V

N

A

A

A

A

I

Y

E

K

D

A

A

L

L

G

G

N

T

R

R

I

F

R

T

V

H

M

T

P

P

F

I

active site: E289 (= E704), P290 (= P705)
binding pterin cytosine dinucleotide: I215 (≠ V637), N216 (= N638), M219 (≠ Q641), V220 (= V642), Q223 (= Q645), K285 (≠ S700), G286 (= G701), V287 (≠ I702), G288 (= G703), E289 (= E704)

Sites not aligning to the query:

binding pterin cytosine dinucleotide: 45, 46, 47, 48, 49, 85, 87, 89, 90
binding nicotinic acid: 17, 18

Q0QLF1 Nicotinate dehydrogenase medium molybdopterin subunit; NDH; Nicotinic acid hydroxylase medium molybdopterin subunit; NAH; EC 1.17.1.5 from Eubacterium barkeri (Clostridium barkeri) (see paper)
32% identity, 18% coverage: 603:731/737 of query aligns to 183:316/330 of Q0QLF1

query
sites
Q0QLF1

S

S

F

Y

G

A

S

T

V

T

V

I

A

A

E

E

I

V

A

-

E

E

V

V

S

D

T

T

D

E

G

-

N

T

G

G

Q

E

I

V

K

D

V

V

E

L

R

K

V

V

A

S

A

A

V

H

D

D

C
x
V

G
|
G

L
x
T

A
x
P

V
x
I

N
|
N

P
x
R

D
x
S

Q
x
M

V
|
V

R
x
E

A
x
G

Q
|
Q

V

I

E

E

G

G

I

V

G

T

F

M

G

G

L

Q

S

G

A

F

I

V

L

L

G

M

E

E

I

I

S

E

L

V

T

N

-

T

-

K

D

N

G

G

Q

A

V

I

D

K

Q

N

G

P

N

S

F

M

D

S

L

K

Y

Y

T

I

P

I

L

P

R

S

I

N

D

R

A

D

M

V

P

P

A

E

V

I

E

H

V

S

H

I

I

L

V

V

A

E

S

S

A

E

N

G

P

G

P

P

-

G

-

P

-

F

-

G

-
x
A

S
x
K

G
|
G

I
x
V

G
|
G

E
|
E

P

P

G

A

V

L

P

I

P

P

I

M

G

I

P

P

A

A

V

V

A

V

N

A

A

A

A

I

Y

E

K

D

A

A

L

L

G

G

N

T

R

R

I

F

R

T

V

H

M

T

P

P

F

I

211:223 (vs. 633:645, 31% identical) binding Se-Mo-molybdopterin cytosine dinucleotide
AKGVGE 284:289 (≠ -SGIGE 700:704) binding Se-Mo-molybdopterin cytosine dinucleotide

Sites not aligning to the query:

45:49 binding Se-Mo-molybdopterin cytosine dinucleotide
85:90 binding Se-Mo-molybdopterin cytosine dinucleotide

G3X982 Aldehyde oxidase 3; Aldehyde oxidase homolog 1; Azaheterocycle hydroxylase 3; EC 1.2.3.1; EC 1.17.3.- from Mus musculus (Mouse) (see paper)
24% identity, 48% coverage: 210:563/737 of query aligns to 580:947/1335 of G3X982

query
sites
G3X982

I

I

G

G

N

R

P

P

E

I

L

M

K

H

R

Q

F

-

D

S

S

G

A

I

R

K

K

H

A

A

N

T

G

G

T

E

E

A

Q

V

Y

F

T

C

I

D

D

D

V

M

K

S

-

V

L

L

P

P

G

G

M

E

L

L

T

F

A

L

V

A

M

V

I

V

H

T

P

S

L

K

F

S

G

H

A

A

K

K

A

I

K

I

S

S

F

L

D

D

A

A

S

S

A

E

A

A

R

L

A

A

V

S

K

L

D

G

V

V

D

D

V

V

-

T

-

A

-

R

E

D

T

V

P

P

R

G

G

D

I

N

A

G

V

R

V

E

G

E

E

E

H

S

M

L

W

Y

A

A

A

Q

-

D

-

E

-

V

-

I

I

C

K

V

G

G

R

Q

E

I

A

V

V

C

T

A

V

V

E

A

W

A

D

D

E

S

A

Y

G

A

A

H

E

A

K

Q

R

Q

G

A

T

A

Q

K

I

V

L

K

S

I

M

V

Y

Y

R

Q

D

D

L

I

V

-

K

-

P

E

P

P

A

M

A

I

V

V

A

T

R

V

K

Q

D

D

-

A

-

L

-

Q

-

Y

-

E

-

S

-

F

-

I

-

G

-

P

-

E

-

R

-

K

-

L

-

E

-

Q

G

G

D

N

A

V

E

E

A

E

E

A

F

F

A

Q

K

C

A

A

A

D

K

Q

V

I

I

L

E

E

A

G

S

E

F

V

E

H

F

L

P

G

Y

G

L

Q

A

E

H

H

A

F

A

Y

M

M

E

E

P

T

L

Q

N

S

A

V

-

R

V

V

A

V

R

P

M

K

N

G

D

E

D

D

G

K

T

E

L

M

E

D

I

I

W

Y

G

V

G

S

H

S

Q

Q

F

D

T

A

D

A

V

F

Y

T

Q

Q

K

E

L

M

A

V

G

A

D

R

V

T

A

L

G

G

V

I

A

P

P

K

E

N

K

R

V

I

R

N

L

C

H

H

V

V

M

K

K

R

T

V

G

G

S
x
A

F

F

G

G

R

G

R

K

A
|
A

V

S

F

K

D

P

G

G

D

L

V

L

V

A

V

S

E

V

A

A

V

A

H

V

V

A

A

A

K

Q

A

K

I

T

G

G

F

-

R

-

A

R

P

P

V

I

K

R

L

F

Q

I

W

L

T

E

R

R

E

R

D

D

M

M

-

L

-

I

R

T

G

G

R

R

Y

H

R

-

P

-

A

P

Y

L

V

L

H

G

S

K

L

Y

K

K

A

I

G

G

I

F

D

M

D

N

G

N

G

G

K

K

L

I

V

K

A

A

W

A

T

D

D

I

H

Q

I

L

V

Y

G

I

Q

N

S

G

I

G

V

C

A

T

N

P

T

D

A

D

F

S

E

E

G

L

M

V

V

I

K

E

N
x
Y

G

A

V

L

D

-

P

-

T

L

S
x
K

V

L

E

E

G

N

A

A

S

-

N

-

L

-

P

-

Y

Y

A

K

I

I

P

P

N

N

Q

L

A

R

V

V

G

R

L

G

T

R

S

V

T

C

E

K

V

T

G

N

V

L

P

P

V

S

-

N

L

T

W

A

W

F

R

R

S

G

V

F

G

G

S

F

T

P

H

Q

T

G

A

A

F

F

A

V

A

T

E

E

T

T

F

C

L

M

D

S

E

A

V

V

A

A

E

A

A

K

A

C

G

R

R

L

D

P

P

P

V

E

E

K

F

V

R

R

A802 (≠ S411) binding Mo-molybdopterin
A807 (= A416) mutation to V: No effect on kinetic constants with smaller substrates like benzaldehyde or phthalazine. Decreases substrate affinity and slightly increases catalytic efficiency for bulkier substrates like phenanthridine.
Y885 (≠ N496) mutation to M: Slightly decreases substrate affinity but no effect on activity with smaller substrates like benzaldehyde or phthalazine. Increases catalytic efficiency with bulkier substrates like phenanthridine or more charged substrates like N1-methylnicotinamide.
K889 (≠ S502) mutation to H: No effect on substrate affinity but decreases catalytic efficiency for smaller substrates like benzaldehyde or phthalazine. Increases substrate affinity and activity for bulkier substrates like phenanthridine.

Sites not aligning to the query:

47 binding [2Fe-2S] cluster
52 binding [2Fe-2S] cluster
55 binding [2Fe-2S] cluster
77 binding [2Fe-2S] cluster
116 binding Mo-molybdopterin
117 binding [2Fe-2S] cluster
120 binding [2Fe-2S] cluster
152 binding [2Fe-2S] cluster
154 binding [2Fe-2S] cluster
264:271 binding FAD
354 binding FAD
358 binding FAD
367 binding FAD
411 binding FAD
1043 binding Mo-molybdopterin
1199 binding Mo-molybdopterin
1266 E→Q: Loss of activity with different N-heterocyclic compounds as substrates. 60% reduction of activity with benzaldehyde.

3zyvB Crystal structure of the mouse liver aldehyde oxidase 3 (maox3) (see paper)
24% identity, 51% coverage: 198:572/737 of query aligns to 516:901/1262 of 3zyvB

query
sites
3zyvB

E

D

V

V

K

D

L

F

K

Q

Q

Q

P

P

N

L

D

Q

W

-

K

D

L

P

I

I

G

G

N

R

P

P

E

I

L

M

K

H

R

Q

F

-

D

S

S

G

A

I

R

K

K

H

A

A

N

T

G

G

T

E

E

A

Q

V

Y

F

T

C

I

D

D

D

V

M

K

S

-

V

L

L

P

P

G

G

M

E

L

L

T

F

A

L

V

A

M

V

I

V

H

T

P

S

L

K

F

S

G

H

A

A

K

K

A

I

K

I

S

S

F

L

D

D

A

A

S

S

A

E

A

A

R

L

A

A

V

S

K

L

D

G

V

V

D

D

V

V

E

-

T

T

P

A

R

R

G

D

I

V

A

P

V

G

V

D

G

N

-

G

-

E

E

E

H

S

M

L

W

Y

A

A

A

Q

-

D

-

E

-

V

-

I

I

C

K

V

G

G

R

Q

E

I

A

V

V

C

T

A

V

V

E

A

W

A

D

D

E

S

A

Y

G

A

A

H

E

A

K

Q

R

Q

G

A

T

A

Q

K

I

V

L

K

S

I

M

V

Y

Y

R

Q

D

D

L

I

V

-

K

-

P

-

P

P

A

M

A

I

V

V

A

T

R

V

K

Q

D

D

-

A

-

L

-

Q

-

Y

-

E

-

S

-

F

-

I

-

G

-

P

-

E

-

R

-

K

-

L

-

E

-

Q

G

G

D

N

A

V

E

E

A

E

E

A

F

F

A

Q

K

C

A

A

A

D

K

Q

V

I

I

L

E

E

A

G

S

E

F

V

E

H

F

L

P

G

Y

G

L

Q

A

E

H

H

A

F

A

Y

M

M

E

E

P

T

L

Q

N

S

A

V

-

R

V

V

A

V

R

P

M

K

N

G

D

E

D

D

G

K

T

E

L

M

E

D

I

I

W

Y

G

V

G

S

H

S

Q
|
Q

F

D

T

A

D

A

V

F

Y

T

Q

Q

K

E

L

M

A

V

G

A

D

R

V

T

A

L

G

G

V

I

A

P

P

K

E

N

K

R

V

I

R

N

L

C

H

H

V

V

M

K

K

R

T

V

G

G

S

A

F

F

G

G

R

G

R

K

A
|
A

V

S

F

K

D

P

G

G

D

L

V

L

V

A

V

S

E

V

A

A

V

A

H

V

V

A

A

A

K

Q

A

K

I

T

G

G

F

-

R

-

A

R

P

P

V

I

K

R

L

F

Q

I

W

L

T

E

R

R

E

R

D

D

M

M

-

L

-

I

R

T

G

G

R

R

Y

H

R

-

P

-

A

P

Y

L

V

L

H

G

S

K

L

Y

K

K

A

I

G

G

I

F

D

M

D

N

G

N

G

G

K

K

L

I

V

K

A

A

W

A

T

D

D

I

H

Q

I

L

V

Y

G

I

Q

N

S

G

I

G

V

C

A

T

N

P

T

D

A

D

F

S

E

E

G

L

M

V

V

I

K

E

N
x
Y

G

A

V

L

D

-

P

-

T

L

S
x
K

V

L

E

E

G

N

A

A

S

-

N

-

L

-

P

-

Y

Y

A

K

I

I

P

P

N

N

Q

L

A

R

V

V

G

R

L

G

T

R

S

V

T

C

E

K

V

T

G

N

V

L

P

P

V

S

-

N

L

T

W

A

W

F

R
|
R

S

G

V

F

G

G

S

F

T

P

H

Q

T

G

A

A

F

F

A

V

A

T

E

E

T

T

F

C

L

M

D

S

E

A

V

V

A

A

E

A

A

K

A

C

G

R

R

L

D

P

P

P

V

E

E

K

F

V

R

R

-

E

L

L

S

N

M

M

L

Y

E

R

P

T

D

I

S

D

R

R

active site: Q716 (= Q381), A751 (= A416), Y829 (≠ N496), K833 (≠ S502), R861 (= R533)

Sites not aligning to the query:

active site: 1207, 1208
binding flavin-adenine dinucleotide: 227, 229, 230, 231, 232, 233, 234, 267, 303, 304, 312, 313, 316, 317, 319, 325, 326, 366, 392, 393
binding fe2/s2 (inorganic) cluster: 39, 41, 42, 44, 46, 49, 69, 71, 111, 112, 114, 146, 148

8emtB Cryo-em analysis of the human aldehyde oxidase from liver (see paper)
23% identity, 48% coverage: 210:564/737 of query aligns to 488:837/1221 of 8emtB

query
sites
8emtB

I

I

G

G

N

H

P

P

E

-

L

I

K

M

R

H

F

L

D

S

S

G

A

V

R

K

K

H

A

A

N

T

G

G

T

E

E

A

Q

I

Y

Y

T

C

I

D

D

D

V

M

K

P

L

L

P

V

G

D

M

Q

-

E

L

L

T

F

A

L

V

T

M

F

I

V

H

T

P

S

L

R

F

A

G

H

A

A

K

K

A

I

K

V

S

S

F

I

D

D

A

L

S

S

A

E

A

A

R

L

A

S

V

M

K

P

D

G

V

V

D

D

V

I

V

M

E

-

T

-

P

-

R

-

G

-

I

-

A

-

V

-

V

T

G

A

E

E

H

H

M

F

W

L

A

A

A

T

I

D

K

K

-

V

-

F

-

C

-

V

G

G

R

Q

E

L

A

V

V

C

T

A

V

V

E

L

W

A

D

D

E

S

A

E

G

V

A

Q

E

A

K

K

R

R

G

A

T

A

Q

K

Q

R

I

V

L

K

S

I

M

V

Y

Y

R

Q

D

D

L

L

-

E

-

P

-

L

-

I

-

L

-

T

V

I

K

E

P

S

P

P

A

E

A

R

V

-

A

K

R

L

K

E

D

Y

G

G

D

N

A

V

E

D

A

E

E

A

F

F

A

K

K

V

A

V

A

D

K

Q

V

I

I

L

E

E

A

G

S

E

F

I

E

H

F

M

P

G

Y

G

L

Q

A

E

H

H

A

F

A

Y

M

M

E

E

P

T

L

Q

N

S

A

M

-

L

V

V

A

V

R

P

M

K

N

G

D

E

D

D

G

Q

T

E

L

M

E

D

I

V

W

Y

G

V

G

S

H

T

Q

Q

F

F

T

P

D

K

V

Y

Y

I

Q

Q

K

D

L

I

A

V

G

A

D

S

V

T

A

L

G

K

V

L

A

P

P

A

E

N

K

K

V

V

R

M

L

C

H

H

V

V

M

R

K

R

T

V

G

G

S

A

F

F

G

G

R

G

R

K

A

V

V

L

F

K

D

T

G

G

D

-

V

-

V

I

E

A

A

A

V

V

H

T

V

A

A

F

K

A

A

A

I

N

G

K

F

H

R

G

A

R

P

A

V

V

K

R

L

C

Q

V

W

L

T

E

R

R

E

G

D

E

D

D

M

M

-

L

-

I

R

T

G

G

R

R

Y

H

R

-

P

-

A

P

Y

Y

V

L

H

G

S

K

L

Y

K

K

A

A

G

G

I

F

D

M

D

N

G

D

G

G

K

R

L

I

V

L

A

A

W

L

-

D

T

M

D

E

H

H

I

-

V

-

G

-

Q

Y

S

S

I

N

V

A

A

G

N

A

T

S

A

L

F

D

E

E

G

S

M

L

V

F

K

V

N

I

G

E

V

M

D

G

P

L

T

L

S

K

V

M

E

D

G

N

A

A

S

-

N

-

L

-

P

-

Y

Y

A

K

I

F

P

P

N

N

Q

L

A

R

V

C

G

R

L

G

T

W

S

A

T

C

E

R

V

T

G

N

V

L

P

P

V

S

-

N

L

T

W

A

W

F

R

R

S

G

V

F

G

G

S

F

T

P

H

Q

T

A

A

A

F

L

A

I

A

T

E

E

T

S

F

C

L

I

D

T

E

E

V

V

A

A

E

A

A

K

A

C

G

G

R

L

D

S

P

P

V

E

E

K

F

V

R

R

L

I

Sites not aligning to the query:

binding flavin-adenine dinucleotide: 210, 211, 213, 214, 216, 217, 218, 291, 292, 300, 304, 305, 307, 314
binding fe2/s2 (inorganic) cluster: 38, 39, 40, 42, 44, 45, 47, 69, 109, 112, 144, 146

P19919 Carbon monoxide dehydrogenase large chain; CO dehydrogenase subunit L; CO-DH L; EC 1.2.5.3 from Afipia carboxidovorans (strain ATCC 49405 / DSM 1227 / KCTC 32145 / OM5) (Oligotropha carboxidovorans) (see 2 papers)
22% identity, 48% coverage: 216:571/737 of query aligns to 26:427/809 of P19919

query
sites
P19919

K

K

R

R

F

V

D

E

S

D

A

I

R

R

K

F

A

T

N

Q

G

G

T

K

E

G

Q

N

Y

Y

T

V

I

D

D

D

V

V

K

K

L

L

P

P

G

G

M

M

L

L

T

F

A

G

V

D

M

F

I

V

H

R

P

S

L

H

F

A

G

H

A

A

K

R

A

I

K

K

S

S

F

I

D

D

A

T

S

S

A

K

A

A

R

K

A

A

V

L

K

P

D

G

V

V

V

F

D

A

V

V

V

L

E

-

T

T

P

A

R

A

G

D

I

L

A

K

V

P

V

L

G

N

E

L

H

H

M

Y

W

M

A

P

A

T

I

L

K

A

G

G

R

D

-

V

-

Q

-

A

-

V

-

L

-

A

-

D

E

E

A

K

V

V

T

L

V

F

E

Q

W

N

D

Q

E

E

A

V

G

A

A

F

E

V

K

V

R

A

G

K

T

D

Q

R

Q

Y

I

V

L

A

S

A

M

D

Y

A

R

I

D

E

L

L

V

V

K

E

-

V

-

D

-

Y

-

E

-

P

-

L

-

P

-

V

-

L

-

V

-

D

-

P

-

F

-

K

-

A

-

M

K

E

P

P

P

D

A

A

A

P

V

L

A

L

R

R

K

E

D

D

-

I

-

K

-

D

-

K

-

M

-

T

-

G

-

A

-

H

-

G

-

A

-

R

-

K

-

H

-

N

-

H

-

I

-

F

-

R

-

W

-

E

-

I

G

G

D

D

A

K

E

E

-

G

-

T

-

D

A

A

E

T

F

F

A

A

K

K

A

A

A

E

K

V

V

V

I

S

E

K

A

D

S

M

F

F

E

T

F

Y

P

H

Y

R

L

V

A

H

H

P

A

S

A

P

M

L

E

E

P

T

L

C

N

Q

A

C

V

V

A

A

R

S

M

M

N

D

D

K

-

I

D

K

G

G

T

E

L

L

E

T

I

L

W

W

G

G

G

T

H

F

Q

Q

F

A

T

P

D

H

V

V

Y

I

Q

R

K

T

L

V

A

V

G

S

D

L

V

I

A

S

G

G

V

L

A

P

P

E

E

H

K

K

V

I

R

H

L

V

H

I

V

A

M

P

K

D

T

I

G

G

S

G

F

F

G

G

R

N

R

K

A

V

-

G

V

A

F

Y

D

S

G

G

D

Y

V

V

V

C

V

A

E

-

A

-

V

-

H

-

V

V

A

V

K

A

A

S

I

I

G

V

F

L

R

G

A

V

P

P

V

V

K

K

L

W

Q

V

W

E

T

D

R

R

E

M

D

E

D

N

M

L

R

S

G

T

R

S

Y

F

R

A

P

R

A

D

Y

Y

V

H

H

M

S

T

L

T

K

E

A

L

G

A

I

A

D

T

D

K

G

D

G

G

K

K

L

I

V

L

A

A

W

M

T

R

D

C

H

H

I

V

V

L

G

A

Q

D

S

-

I

-

V

-

A

-

N

H

T

G

A

A

F

F

E

D

G

A

M

C

V

A

K

D

N

P

G

S

V

K

D

W

P

P

T

A

S

G

V

F

E

M

G

N

A

I

S

C

N

T

L

G

P

S

Y

Y

A

D

I

M

P

P

-

V

-

A

N

H

Q

L

A

A

V

V

-

D

G

G

L

V

T

Y

S

T

T

N

E

K

V

A

G

S

V

G

P

G

V

V

L

A

W

Y

W

R

R
x
C

S

S

V

F

G

R

S

V

T

T

H

E

T

A

A

V

F

Y

A

A

A

I

E

E

T

R

F

A

L

I

D

E

E

T

V

L

A

A

E

Q

A

R

A

L

G

E

R

M

D

D

P

S

V

A

E

D

F

L

R

R

L

I

-

K

S

N

M

F

L

I

E

Q

P

P

D

E

S

Q

C388 (≠ R533) binding Cu(+)

Sites not aligning to the query:

763 binding Mo-molybdopterin cytosine dinucleotide

1n60B Crystal structure of the cu,mo-co dehydrogenase (codh); cyanide- inactivated form (see paper)
22% identity, 48% coverage: 216:571/737 of query aligns to 20:421/803 of 1n60B

query
sites
1n60B

K

K

R

R

F

V

D

E

S

D

A

I

R

R

K

F

A

T

N

Q

G

G

T

K

E

G

Q

N

Y

Y

T

V

I

D

D

D

V

V

K

K

L

L

P

P

G

G

M

M

L

L

T

F

A

G

V

D

M

F

I

V

H

R

P

S

L

H

F

A

G

H

A

A

K

R

A

I

K

K

S

S

F

I

D

D

A

T

S

S

A

K

A

A

R

K

A

A

V

L

K

P

D

G

V

V

V

F

D

A

V

V

V

L

E

-

T

T

P

A

R

A

G

D

I

L

A

K

V

P

V

L

G

N

E

L

H

H

M

Y

W

M

A

P

A

T

I

L

K

A

G

G

R

D

-

V

-

Q

-

A

-

V

-

L

-

A

-

D

E

E

A

K

V

V

T

L

V

F

E

Q

W

N

D

Q

E

E

A

V

G

A

A

F

E

V

K

V

R

A

G

K

T

D

Q

R

Q

Y

I

V

L

A

S

A

M

D

Y

A

R

I

D

E

L

L

V

V

K

E

-

V

-

D

-

Y

-

E

-

P

-

L

-

P

-

V

-

L

-

V

-

D

-

P

-

F

-

K

-

A

-

M

K

E

P

P

P

D

A

A

A

P

V

L

A

L

R

R

K

E

D

D

-

I

-

K

-

D

-

K

-

M

-

T

-

G

-

A

-

H

-

G

-

A

-

R

-

K

-

H

-

N

-

H

-

I

-

F

-

R

-

W

-

E

-

I

G

G

D

D

A

K

E

E

-

G

-

T

-

D

A

A

E

T

F

F

A

A

K

K

A

A

A

E

K

V

V

V

I

S

E

K

A

D

S

M

F

F

E

T

F

Y

P

H

Y

R

L

V

A

H

H

P

A

S

A

P

M

L

E

E

P

T

L

C

N

Q

A

C

V

V

A

A

R

S

M

M

N

D

D

K

-

I

D

K

G

G

T

E

L

L

E

T

I

L

W

W

G

G

G

T

H

F

Q
|
Q

F

A

T

P

D

H

V

V

Y

I

Q

R

K

T

L

V

A

V

G

S

D

L

V

I

A

S

G

G

V

L

A

P

P

E

E

H

K

K

V

I

R

H

L

V

H

I

V

A

M

P

K

D

T

I

G

G

S
x
G

F
|
F

G
|
G

R

N

R

K

A
x
V

-

G

V

A

F

Y

D

S

G

G

D

Y

V

V

V

C

V

A

E

-

A

-

V

-

H

-

V

V

A

V

K

A

A

S

I

I

G

V

F

L

R

G

A

V

P

P

V

V

K

K

L

W

Q

V

W

E

T

D

R

R

E

M

D

E

D

N

M

L

R

S

G

T

R

S

Y

F

R

A

P

R

A

D

Y

Y

V

H

H

M

S

T

L

T

K

E

A

L

G

A

I

A

D

T

D

K

G

D

G

G

K

K

L

I

V

L

A

A

W

M

T

R

D

C

H

H

I

V

V

L

G

A

Q

D

S

-

I

-

V

-

A

-

N

H

T

G

A

A

F

F

E

D

G

A

M

C

V

A

K

D

N

P

G

S

V

K

D

W

P
|
P

T

A

S

G

V

F

E

M

G

N

A
x
I

S

C

N

T

L

G

P

S

Y

Y

A

D

I

M

P

P

-

V

-

A

N

H

Q

L

A

A

V

V

-

D

G

G

L

V

T

Y

S

T

T

N

E

K

V

A

G

S

V

G

P

G

V

V

L

A

W

Y

W
x
R

R
x
C

S

S

V

F

G

R

S

V

T

T

H

E

T

A

A

V

F

Y

A

A

A

I

E

E

T

R

F

A

L

I

D

E

E

T

V

L

A

A

E

Q

A

R

A

L

G

E

R

M

D

D

P

S

V

A

E

D

F

L

R

R

L

I

-

K

S

N

M

F

L

I

E

Q

P

P

D

E

S

Q

active site: Q234 (= Q381), V269 (≠ A416), P346 (= P500), I352 (≠ A506), R381 (≠ W532), C382 (≠ R533)
binding pterin cytosine dinucleotide: G264 (≠ S411), F265 (= F412), R381 (≠ W532)
binding mo(vi)(=o)(oh)2 cluster: F265 (= F412), G266 (= G413)

Sites not aligning to the query:

active site: 757, 758
binding pterin cytosine dinucleotide: 522, 523, 524, 526, 529, 561, 562, 563, 564, 566, 567, 680, 684, 688, 689, 692, 753, 754, 755, 757
binding mo(vi)(=o)(oh)2 cluster: 562, 563, 757

1n62B Crystal structure of the mo,cu-co dehydrogenase (codh), n- butylisocyanide-bound state (see paper)
22% identity, 48% coverage: 216:571/737 of query aligns to 21:422/804 of 1n62B

query
sites
1n62B

K

K

R

R

F

V

D

E

S

D

A

I

R

R

K

F

A

T

N

Q

G

G

T

K

E

G

Q

N

Y

Y

T

V

I

D

D

D

V

V

K

K

L

L

P

P

G

G

M

M

L

L

T

F

A

G

V

D

M

F

I

V

H

R

P

S

L

H

F

A

G

H

A

A

K

R

A

I

K

K

S

S

F

I

D

D

A

T

S

S

A

K

A

A

R

K

A

A

V

L

K

P

D

G

V

V

V

F

D

A

V

V

V

L

E

-

T

T

P

A

R

A

G

D

I

L

A

K

V

P

V

L

G

N

E

L

H

H

M

Y

W

M

A

P

A

T

I

L

K

A

G

G

R

D

-

V

-

Q

-

A

-

V

-

L

-

A

-

D

E

E

A

K

V

V

T

L

V

F

E

Q

W

N

D

Q

E

E

A

V

G

A

A

F

E

V

K

V

R

A

G

K

T

D

Q

R

Q

Y

I

V

L

A

S

A

M

D

Y

A

R

I

D

E

L

L

V

V

K

E

-

V

-

D

-

Y

-

E

-

P

-

L

-

P

-

V

-

L

-

V

-

D

-

P

-

F

-

K

-

A

-

M

K

E

P

P

P

D

A

A

A

P

V

L

A

L

R

R

K

E

D

D

-

I

-

K

-

D

-

K

-

M

-

T

-

G

-

A

-

H

-

G

-

A

-

R

-

K

-

H

-

N

-

H

-

I

-

F

-

R

-

W

-

E

-

I

G

G

D

D

A

K

E

E

-

G

-

T

-

D

A

A

E

T

F

F

A

A

K

K

A

A

A

E

K

V

V

V

I

S

E

K

A

D

S

M

F

F

E

T

F

Y

P

H

Y

R

L

V

A

H

H

P

A

S

A

P

M

L

E

E

P

T

L

C

N

Q

A

C

V

V

A

A

R

S

M

M

N

D

D

K

-

I

D

K

G

G

T

E

L

L

E

T

I

L

W

W

G

G

G

T

H

F

Q
|
Q

F

A

T

P

D

H

V

V

Y

I

Q

R

K

T

L

V

A

V

G

S

D

L

V

I

A

S

G

G

V

L

A

P

P

E

E

H

K

K

V

I

R

H

L

V

H

I

V

A

M

P

K

D

T

I

G

G

S
x
G

F
|
F

G
|
G

R

N

R

K

A
x
V

-

G

V

A

F

Y

D

S

G

G

D

Y

V

V

V

C

V

A

E

-

A

-

V

-

H

-

V

V

A

V

K

A

A

S

I

I

G

V

F

L

R

G

A

V

P

P

V

V

K

K

L

W

Q

V

W

E

T

D

R

R

E

M

D

E

D

N

M

L

R

S

G

T

R

S

Y

F

R

A

P

R

A

D

Y

Y

V

H

H

M

S

T

L

T

K

E

A

L

G

A

I

A

D

T

D

K

G

D

G

G

K

K

L

I

V

L

A

A

W

M

T

R

D

C

H

H

I

V

V

L

G

A

Q

D

S

-

I

-

V

-

A

-

N

H

T

G

A

A

F

F

E

D

G

A

M

C

V

A

K

D

N

P

G

S

V

K

D

W

P
|
P

T

A

S

G

V

F

E

M

G

N

A
x
I

S

C

N

T

L

G

P

S

Y

Y

A

D

I

M

P

P

-

V

-

A

N

H

Q

L

A

A

V

V

-

D

G

G

L

V

T

Y

S

T

T

N

E

K

V

A

G

S

V

G

P

G

V
|
V

L
x
A

W

Y

W
x
R

R
x
C

S

S

V
x
F

G

R

S

V

T

T

H

E

T

A

A

V

F

Y

A

A

A

I

E

E

T

R

F

A

L

I

D

E

E

T

V

L

A

A

E

Q

A

R

A

L

G

E

R

M

D

D

P

S

V

A

E

D

F

L

R

R

L

I

-

K

S

N

M

F

L

I

E

Q

P

P

D

E

S

Q

active site: Q235 (= Q381), V270 (≠ A416), P347 (= P500), I353 (≠ A506), R382 (≠ W532), C383 (≠ R533)
binding cu(i)-s-mo(iv)(=o)o-nbic cluster: G267 (= G413), V379 (= V529), A380 (≠ L530), R382 (≠ W532), C383 (≠ R533), F385 (≠ V535)
binding pterin cytosine dinucleotide: G265 (≠ S411), F266 (= F412), R382 (≠ W532)

Sites not aligning to the query:

active site: 758, 759
binding cu(i)-s-mo(iv)(=o)o-nbic cluster: 563, 564, 758
binding pterin cytosine dinucleotide: 523, 524, 525, 527, 530, 562, 563, 564, 565, 567, 568, 681, 685, 689, 690, 693, 754, 755, 756, 757, 758

1n5wB Crystal structure of the cu,mo-co dehydrogenase (codh); oxidized form (see paper)
22% identity, 48% coverage: 216:571/737 of query aligns to 21:422/804 of 1n5wB

query
sites
1n5wB

K

K

R

R

F

V

D

E

S

D

A

I

R

R

K

F

A

T

N

Q

G

G

T

K

E

G

Q

N

Y

Y

T

V

I

D

D

D

V

V

K

K

L

L

P

P

G

G

M

M

L

L

T

F

A

G

V

D

M

F

I

V

H

R

P

S

L

H

F

A

G

H

A

A

K

R

A

I

K

K

S

S

F

I

D

D

A

T

S

S

A

K

A

A

R

K

A

A

V

L

K

P

D

G

V

V

V

F

D

A

V

V

V

L

E

-

T

T

P

A

R

A

G

D

I

L

A

K

V

P

V

L

G

N

E

L

H

H

M

Y

W

M

A

P

A

T

I

L

K

A

G

G

R

D

-

V

-

Q

-

A

-

V

-

L

-

A

-

D

E

E

A

K

V

V

T

L

V

F

E

Q

W

N

D

Q

E

E

A

V

G

A

A

F

E

V

K

V

R

A

G

K

T

D

Q

R

Q

Y

I

V

L

A

S

A

M

D

Y

A

R

I

D

E

L

L

V

V

K

E

-

V

-

D

-

Y

-

E

-

P

-

L

-

P

-

V

-

L

-

V

-

D

-

P

-

F

-

K

-

A

-

M

K

E

P

P

P

D

A

A

A

P

V

L

A

L

R

R

K

E

D

D

-

I

-

K

-

D

-

K

-

M

-

T

-

G

-

A

-

H

-

G

-

A

-

R

-

K

-

H

-

N

-

H

-

I

-

F

-

R

-

W

-

E

-

I

G

G

D

D

A

K

E

E

-

G

-

T

-

D

A

A

E

T

F

F

A

A

K

K

A

A

A

E

K

V

V

V

I

S

E

K

A

D

S

M

F

F

E

T

F

Y

P

H

Y

R

L

V

A

H

H

P

A

S

A

P

M

L

E

E

P

T

L

C

N

Q

A

C

V

V

A

A

R

S

M

M

N

D

D

K

-

I

D

K

G

G

T

E

L

L

E

T

I

L

W

W

G

G

G

T

H

F

Q
|
Q

F

A

T

P

D

H

V

V

Y

I

Q

R

K

T

L

V

A

V

G

S

D

L

V

I

A

S

G

G

V

L

A

P

P

E

E

H

K

K

V

I

R

H

L

V

H

I

V

A

M

P

K

D

T

I

G

G

S
x
G

F
|
F

G
|
G

R

N

R

K

A
x
V

-

G

V

A

F

Y

D

S

G

G

D

Y

V

V

V

C

V

A

E

-

A

-

V

-

H

-

V

V

A

V

K

A

A

S

I

I

G

V

F

L

R

G

A

V

P

P

V

V

K

K

L

W

Q

V

W

E

T

D

R

R

E

M

D

E

D

N

M

L

R

S

G

T

R

S

Y

F

R

A

P

R

A

D

Y

Y

V

H

H

M

S

T

L

T

K

E

A

L

G

A

I

A

D

T

D

K

G

D

G

G

K

K

L

I

V

L

A

A

W

M

T

R

D

C

H

H

I

V

V

L

G

A

Q

D

S

-

I

-

V

-

A

-

N

H

T

G

A

A

F

F

E

D

G

A

M

C

V

A

K

D

N

P

G

S

V

K

D

W

P
|
P

T

A

S

G

V

F

E

M

G

N

A
x
I

S

C

N

T

L

G

P

S

Y

Y

A

D

I

M

P

P

-

V

-

A

N

H

Q

L

A

A

V

V

-

D

G

G

L

V

T

Y

S

T

T

N

E

K

V

A

G

S

V

G

P

G

V

V

L
x
A

W

Y

W
x
R

R
x
C

S

S

V

F

G

R

S

V

T

T

H

E

T

A

A

V

F

Y

A

A

A

I

E

E

T

R

F

A

L

I

D

E

E

T

V

L

A

A

E

Q

A

R

A

L

G

E

R

M

D

D

P

S

V

A

E

D

F

L

R

R

L

I

-

K

S

N

M

F

L

I

E

Q

P

P

D

E

S

Q

active site: Q235 (= Q381), V270 (≠ A416), P347 (= P500), I353 (≠ A506), R382 (≠ W532), C383 (≠ R533)
binding cu(i)-s-mo(vi)(=o)oh cluster: G267 (= G413), A380 (≠ L530), R382 (≠ W532), C383 (≠ R533)
binding pterin cytosine dinucleotide: G265 (≠ S411), F266 (= F412), R382 (≠ W532)

Sites not aligning to the query:

active site: 758, 759
binding cu(i)-s-mo(vi)(=o)oh cluster: 563, 564, 758
binding pterin cytosine dinucleotide: 523, 524, 525, 527, 530, 562, 563, 565, 567, 568, 681, 685, 689, 690, 693, 754, 755, 756, 758

Query Sequence

>WP_015888272.1 NCBI__GCF_000018545.1:WP_015888272.1
MLPKLMQSLALPAARVEASRRQFLIGALATGTGLAIGFRLLSASPAAASETPEAGAHAFS
PYVTIDGDGKVTVLSSQFEMGQGSYNGIATLVAEELDADWSTIDVTGAAGNLPAYGNIAF
GGAMQGTGGSTSMVTSWERYRKAGAAARAMLVAAAASEWNVEAAEITVEKGVLSHPSGKS
GGFGDFAARAATLPVPAEVKLKQPNDWKLIGNPELKRFDSARKANGTEQYTIDVKLPGML
TAVMIHPPLFGAKAKSFDASAARAVKDVVDVVETPRGIAVVGEHMWAAIKGREAVTVEWD
EAGAEKRGTQQILSMYRDLVKKPPAAVARKDGDAEAEFAKAAKVIEASFEFPYLAHAAME
PLNAVARMNDDGTLEIWGGHQFTDVYQKLAGDVAGVAPEKVRLHVMKTGGSFGRRAVFDG
DVVVEAVHVAKAIGFRAPVKLQWTREDDMRGGRYRPAYVHSLKAGIDDGGKLVAWTDHIV
GQSIVANTAFEGMVKNGVDPTSVEGASNLPYAIPNQAVGLTSTEVGVPVLWWRSVGSTHT
AFAAETFLDEVAEAAGRDPVEFRLSMLEPDSRHATVLKLAAEKAGWQKPLPEGRFRGVAL
AESFGSVVAEIAEVSTDGNGQIKVERVVAAVDCGLAVNPDQVRAQVEGGIGFGLSAILGE
EISLTDGQVDQGNFDLYTPLRIDAMPAVEVHIVASANPPSGIGEPGVPPIGPAVANAAYK
ALGNRIRVMPFAKSLNA

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory