SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_017548294.1 NCBI__GCF_000330705.1:WP_017548294.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 4 hits to proteins with known functional sites (download)

1j6tA Complex of enzyme iiamtl and the histidine-containing phosphocarrier protein hpr from escherichia coli nmr, restrained regularized mean structure (see paper)
31% identity, 90% coverage: 15:145/146 of query aligns to 15:144/144 of 1j6tA

query
sites
1j6tA
A
 
A
S
 
A
D
 
T
A
 
K
E
 
E
E
 
E
A
 
A
I
 
I
H
 
R
R
 
F
A
 
A
G
 
G
T
 
E
L
 
Q
L
 
L
A
 
V
N
 
K
A
 
G
D
 
G
G
 
Y
V
 
V
E
 
E
H
 
P
Q
 
E
Y
 
Y
I
 
V
E
 
Q
A
 
A
M
 
M
I
 
L
R
 
D
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x
R
Y
 
E
R
 
K
E
 
L
N
 
T
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P
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T
Y
 
Y
F
 
-
V
 
-
L
 
L
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G
P
 
E
K
 
S
I
 
I
A
 
A
L
 
V
P
 
P
H
|
H
A
 
G
R
 
T
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V
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E
-
 
A
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K
D
 
D
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F
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C
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Q
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P
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G
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V
E
 
R
F
 
F
G
 
G
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E
K
 
E
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E
N
 
D
D
 
D
P
 
I
V
 
A
S
 
R
L
 
L
V
 
V
F
 
I
G
 
G
L
 
I
G
 
A
A
 
A
T
 
R
S
 
N
G
 
-
D
 
N
E
 
E
H
|
H
L
 
I
E
 
Q
I
 
V
L
 
I
Q
 
T
K
 
S
L
 
L
T
 
T
R
 
N
L
 
A
L
 
L
N
 
D
E
 
D
K
 
E
E
 
S
A
 
V
A
 
I
D
 
E
E
 
R
L
 
L
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A
N
 
H
A
 
T
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T
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S
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D
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E
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V
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L
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E
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L
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L
E
 
A
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G
R
 
R

P00550 PTS system mannitol-specific EIICBA component; EIICBA-Mtl; EII-Mtl; EC 2.7.1.197 from Escherichia coli (strain K12) (see 2 papers)
31% identity, 90% coverage: 15:145/146 of query aligns to 507:636/637 of P00550

query
sites
P00550
A
 
A
S
 
A
D
 
T
A
 
K
E
 
E
E
 
E
A
 
A
I
 
I
H
 
R
R
 
F
A
 
A
G
 
G
T
 
E
L
 
Q
L
 
L
A
 
V
N
 
K
A
 
G
D
 
G
G
 
Y
V
 
V
E
 
E
H
 
P
Q
 
E
Y
 
Y
I
 
V
E
 
Q
A
 
A
M
 
M
I
 
L
R
 
D
S
x
R
Y
 
E
R
 
K
E
 
L
N
 
T
G
 
P
S
 
T
Y
 
Y
F
 
-
V
 
-
L
 
L
S
 
G
P
 
E
K
 
S
I
 
I
A
 
A
L
 
V
P
 
P
H
|
H
A
 
G
R
 
T
P
 
V
E
 
E
-
 
A
-
 
K
D
 
D
G
 
R
V
 
V
K
 
L
D
 
K
A
 
T
S
 
G
V
 
V
S
 
V
L
 
F
V
 
C
K
 
Q
L
 
Y
K
 
P
S
 
E
P
 
G
V
 
V
E
 
R
F
 
F
G
 
G
H
 
E
K
 
E
T
 
E
N
 
D
D
 
D
P
 
I
V
 
A
S
 
R
L
 
L
V
 
V
F
 
I
G
 
G
L
 
I
G
 
A
A
 
A
T
 
R
S
 
N
G
 
-
D
 
N
E
 
E
H
 
H
L
 
I
E
 
Q
I
 
V
L
 
I
Q
 
T
K
 
S
L
 
L
T
 
T
R
 
N
L
 
A
L
 
L
N
 
D
E
 
D
K
 
E
E
 
S
A
 
V
A
 
I
D
 
E
E
 
R
L
 
L
I
 
A
N
 
H
A
 
T
K
 
T
S
 
S
I
 
V
D
 
D
E
 
E
I
 
V
I
 
L
N
 
E
I
 
L
I
 
L
E
 
A
K
 
G
R
 
R

Sites not aligning to the query:

C0H3V2 Mannitol-specific phosphotransferase enzyme IIA component; EIIA; EIII; PTS system mannitol-specific EIIA component from Bacillus subtilis (strain 168) (see paper)
32% identity, 100% coverage: 1:146/146 of query aligns to 1:143/143 of C0H3V2

query
sites
C0H3V2
M
 
M
K
 
Q
F
 
V
L
 
L
T
 
A
E
 
K
K
 
E
L
 
N
I
 
I
D
 
K
A
 
L
E
 
N
F
 
Q
D
 
T
A
 
V
S
 
S
D
 
S
A
 
K
E
 
E
E
 
E
A
 
A
I
 
I
H
 
K
R
 
L
A
 
A
G
 
G
T
 
Q
L
 
T
L
 
L
A
 
I
N
 
D
A
 
N
D
 
G
G
 
Y
V
 
V
E
 
T
H
 
E
Q
 
D
Y
 
Y
I
 
I
E
 
S
A
 
K
M
 
M
I
 
F
R
 
E
S
 
-
Y
 
-
R
 
R
E
 
E
N
 
E
G
 
T
S
 
S
Y
 
S
F
 
T
V
 
F
L
 
M
S
 
G
P
 
N
K
 
F
I
 
I
A
 
A
L
 
I
P
 
P
H
 
H
A
 
G
R
 
T
P
 
E
E
 
E
-
 
A
-
 
K
D
 
S
G
 
E
V
 
V
K
 
L
D
 
H
A
x
S
S
 
G
V
 
I
S
 
S
L
 
I
V
 
I
K
 
Q
L
 
I
K
 
P
S
 
E
P
 
G
V
 
V
E
 
E
F
 
Y
G
 
G
H
 
E
K
 
-
T
 
-
N
 
G
D
 
N
P
 
T
V
 
A
S
 
K
L
 
V
V
 
V
F
 
F
G
 
G
L
 
I
G
 
-
A
 
A
T
 
G
S
 
K
G
 
N
D
 
N
E
 
E
H
 
H
L
 
L
E
 
D
I
 
I
L
 
L
Q
 
S
K
 
N
L
 
I
T
 
A
R
 
I
L
 
I
L
 
C
N
 
S
E
 
E
K
 
E
E
 
E
A
 
N
A
 
I
D
 
E
E
 
R
L
 
L
I
 
I
N
 
S
A
 
A
K
 
K
S
 
S
I
 
E
D
 
E
E
 
D
I
 
L
I
 
I
N
 
A
I
 
I
I
 
F
E
 
N
K
 
E
R
 
V
N
 
N

O31645 PTS system mannose-specific EIIBCA component; EIIBCA-Man; EII-Man; EC 2.7.1.191 from Bacillus subtilis (strain 168) (see 2 papers)
25% identity, 86% coverage: 20:144/146 of query aligns to 529:648/650 of O31645

query
sites
O31645
E
 
Q
A
 
K
I
 
L
H
 
S
R
 
R
A
 
R
G
 
G
T
 
A
L
 
L
L
 
L
A
 
S
N
 
-
A
 
-
D
 
-
G
 
-
V
 
-
E
 
E
H
 
S
Q
 
G
Y
 
F
I
 
K
E
 
Q
A
 
A
M
 
I
I
 
L
R
 
N
S
 
-
Y
 
-
R
 
R
E
 
E
N
 
Q
G
 
Q
S
 
G
Y
 
T
F
 
T
V
 
A
L
 
I
S
 
G
P
 
M
K
 
N
I
 
I
A
 
A
L
 
I
P
 
P
H
 
H
A
 
G
R
 
K
P
 
S
E
 
E
D
 
-
G
 
A
V
 
V
K
 
R
D
 
E
A
 
P
S
 
S
V
 
V
S
 
A
L
 
F
V
 
G
K
 
I
L
 
K
K
 
R
S
 
S
P
 
G
V
 
V
E
 
D
F
 
W
G
 
N
H
 
S
K
 
L
T
 
D
N
 
G
D
 
S
P
 
E
V
 
A
S
 
K
L
 
L
V
 
I
F
 
F
G
 
M
L
 
I
G
 
A
A
 
V
-
 
P
-
 
K
-
 
E
T
 
S
S
 
G
G
 
G
D
 
N
E
 
Q
H
 
H
L
 
L
E
 
K
I
 
I
L
 
L
Q
 
Q
K
 
M
L
 
L
T
 
S
R
 
R
L
 
K
L
 
L
N
 
M
E
 
D
K
 
D
E
 
N
A
 
Y
A
 
R
D
 
E
E
 
R
L
 
L
I
 
L
N
 
S
A
 
V
K
 
Q
S
 
T
I
 
T
D
 
E
E
 
E
I
 
A
I
 
Y
N
 
K
I
 
L
I
 
L
E
 
E
K
 
E

Sites not aligning to the query:

Query Sequence

>WP_017548294.1 NCBI__GCF_000330705.1:WP_017548294.1
MKFLTEKLIDAEFDASDAEEAIHRAGTLLANADGVEHQYIEAMIRSYRENGSYFVLSPKI
ALPHARPEDGVKDASVSLVKLKSPVEFGHKTNDPVSLVFGLGATSGDEHLEILQKLTRLL
NEKEAADELINAKSIDEIINIIEKRN

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory