SitesBLAST
Comparing WP_017596869.1 NCBI__GCF_000341125.1:WP_017596869.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
2o0zA Mycobacterium tuberculosis epsp synthase in complex with product (eps)
53% identity, 97% coverage: 12:424/427 of query aligns to 4:421/424 of 2o0zA
- active site: D54 (= D58), L94 (≠ N97), E311 (= E316), E341 (= E344), H384 (= H387), R385 (= R388), K410 (= K413)
- binding 5-[(1-carboxyvinyl)oxy]-4-hydroxy-3-(phosphonooxy)cyclohex-1-ene-1-carboxylic acid: K23 (= K31), S24 (= S32), R28 (= R36), S167 (= S173), S168 (= S174), Q169 (= Q175), S196 (= S202), E311 (= E316), H336 (= H339), H340 (= H343), R344 (= R347), H384 (= H387), R385 (= R388)
2o0xA Mycobacterium tuberculosis epsp synthase in complex with intermediate
53% identity, 97% coverage: 12:424/427 of query aligns to 4:421/424 of 2o0xA
- active site: D54 (= D58), L94 (≠ N97), E311 (= E316), E341 (= E344), H384 (= H387), R385 (= R388), K410 (= K413)
- binding 5-(1-carboxy-1-phosphonooxy-ethoxyl)-4-hydroxy-3-phosphonooxy-cyclohex-1-enecarboxylic acid: K23 (= K31), S24 (= S32), R28 (= R36), G96 (= G99), R124 (= R127), S167 (= S173), S168 (= S174), Q169 (= Q175), S196 (= S202), H199 (= H205), E311 (= E316), H340 (= H343), E341 (= E344), R344 (= R347), R385 (= R388), K410 (= K413)
2o0eA Mycobacterium tuberculosis epsp synthase in complex with s3p and pep
53% identity, 97% coverage: 12:424/427 of query aligns to 4:421/424 of 2o0eA
- active site: D54 (= D58), L94 (≠ N97), E311 (= E316), E341 (= E344), H384 (= H387), R385 (= R388), K410 (= K413)
- binding phosphoenolpyruvate: K23 (= K31), R124 (= R127), Q169 (= Q175), E311 (= E316), H340 (= H343), E341 (= E344), R344 (= R347), H384 (= H387), R385 (= R388), K410 (= K413)
- binding shikimate-3-phosphate: K23 (= K31), S24 (= S32), R28 (= R36), S167 (= S173), S168 (= S174), Q169 (= Q175), S196 (= S202), H199 (= H205), E311 (= E316), H340 (= H343)
2o0bA Mycobacterium tuberculosis epsp synthase in complex with s3p (partially photolyzed)
53% identity, 97% coverage: 12:424/427 of query aligns to 4:421/424 of 2o0bA
- active site: D54 (= D58), L94 (≠ N97), E311 (= E316), E341 (= E344), H384 (= H387), R385 (= R388), K410 (= K413)
- binding shikimate-3-phosphate: K23 (= K31), S24 (= S32), R28 (= R36), S167 (= S173), S168 (= S174), Q169 (= Q175), S196 (= S202), H199 (= H205), E311 (= E316), H336 (= H339), H340 (= H343)
P9WPY5 3-phosphoshikimate 1-carboxyvinyltransferase; 5-enolpyruvylshikimate-3-phosphate synthase; EPSP synthase; EPSPS; EC 2.5.1.19 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
53% identity, 97% coverage: 12:424/427 of query aligns to 4:421/450 of P9WPY5
7m0oA Dgt-28 epsps (see paper)
40% identity, 93% coverage: 26:424/427 of query aligns to 1:396/400 of 7m0oA
3nvsA 1.02 angstrom resolution crystal structure of 3-phosphoshikimate 1- carboxyvinyltransferase from vibrio cholerae in complex with shikimate-3-phosphate (partially photolyzed) and glyphosate
35% identity, 95% coverage: 21:424/427 of query aligns to 12:423/426 of 3nvsA
- active site: K22 (= K31), S23 (= S32), D49 (= D58), N94 (= N97), P119 (= P122), R124 (= R127), H128 (≠ E131), Q135 (≠ A138), Y142 (≠ D145), E144 (≠ G147), A247 (= A248), A255 (≠ L256), D314 (≠ E316), E342 (= E344), H386 (= H387), R387 (= R388), K412 (= K413)
- binding glyphosate: K22 (= K31), G96 (= G99), R124 (= R127), Q172 (= Q175), D314 (≠ E316), E342 (= E344), R345 (= R347), H386 (= H387), R387 (= R388)
- binding magnesium ion: E123 (= E126), Q145 (≠ R148)
- binding shikimate-3-phosphate: K22 (= K31), S23 (= S32), R27 (= R36), T97 (= T100), S170 (= S173), S171 (= S174), Q172 (= Q175), S198 (= S202), Y201 (≠ H205), D314 (≠ E316), N337 (≠ H339), K341 (≠ H343)
- binding (3r,4s,5r)-3,4,5-trihydroxycyclohex-1-ene-1-carboxylic acid: S23 (= S32), R27 (= R36), Q172 (= Q175), Y201 (≠ H205), D314 (≠ E316), K341 (≠ H343)
Q9KRB0 3-phosphoshikimate 1-carboxyvinyltransferase; 5-enolpyruvylshikimate-3-phosphate synthase; EPSP synthase; EPSPS; EC 2.5.1.19 from Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
35% identity, 95% coverage: 21:424/427 of query aligns to 12:423/426 of Q9KRB0
P11043 3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic; 5-enolpyruvylshikimate-3-phosphate synthase; EPSP synthase; EC 2.5.1.19 from Petunia hybrida (Petunia) (see paper)
32% identity, 94% coverage: 16:418/427 of query aligns to 70:506/516 of P11043
- G173 (= G99) mutation to A: Resistance to glyphosate due to a lower affinity. Slight reduction in EPSP synthase activity.
2pq9A E. Coli epsps liganded with (r)-difluoromethyl tetrahedral reaction intermediate analog (see paper)
34% identity, 93% coverage: 21:418/427 of query aligns to 12:416/427 of 2pq9A
- active site: K22 (= K31), S23 (= S32), D49 (= D58), N94 (= N97), P119 (= P122), R124 (= R127), D313 (≠ E316), E341 (= E344), H385 (= H387), R386 (= R388), K411 (= K413)
- binding (3r,4s,5r)-5-[(1r)-1-carboxy-2,2-difluoro-1-(phosphonooxy)ethoxy]-4-hydroxy-3-(phosphonooxy)cyclohex-1-ene-1-carboxylic acid: K22 (= K31), S23 (= S32), R27 (= R36), G96 (= G99), T97 (= T100), R124 (= R127), S169 (= S173), S170 (= S174), Q171 (= Q175), S197 (= S202), Y200 (≠ H205), D313 (≠ E316), N336 (≠ H339), K340 (≠ H343), R344 (= R347), H385 (= H387), R386 (= R388), K411 (= K413)
2aa9A Epsp synthase liganded with shikimate (see paper)
34% identity, 93% coverage: 21:418/427 of query aligns to 12:416/427 of 2aa9A
- active site: K22 (= K31), S23 (= S32), D49 (= D58), N94 (= N97), P119 (= P122), R124 (= R127), D313 (≠ E316), E341 (= E344), H385 (= H387), R386 (= R388), K411 (= K413)
- binding (3r,4s,5r)-3,4,5-trihydroxycyclohex-1-ene-1-carboxylic acid: K22 (= K31), S23 (= S32), R27 (= R36), T97 (= T100), Q171 (= Q175), Y200 (≠ H205), D313 (≠ E316), K340 (≠ H343)
1x8tA Epsps liganded with the (r)-phosphonate analog of the tetrahedral reaction intermediate (see paper)
34% identity, 93% coverage: 21:418/427 of query aligns to 12:416/427 of 1x8tA
- active site: K22 (= K31), S23 (= S32), D49 (= D58), N94 (= N97), P119 (= P122), R124 (= R127), D313 (≠ E316), E341 (= E344), H385 (= H387), R386 (= R388), K411 (= K413)
- binding [3r-[3a,4a,5b(r*)]]-5-(1-carboxy-1-phosphonoethoxy)-4-hydroxy-3-(phosphonooxy)-1-cyclohexene-1-carboxylic acid: K22 (= K31), S23 (= S32), R27 (= R36), T97 (= T100), S169 (= S173), S170 (= S174), Q171 (= Q175), S197 (= S202), Y200 (≠ H205), D313 (≠ E316), N336 (≠ H339), K340 (≠ H343), R344 (= R347), H385 (= H387), R386 (= R388)
1x8rA Epsps liganded with the (s)-phosphonate analog of the tetrahedral reaction intermediate (see paper)
34% identity, 93% coverage: 21:418/427 of query aligns to 12:416/427 of 1x8rA
- active site: K22 (= K31), S23 (= S32), D49 (= D58), N94 (= N97), P119 (= P122), R124 (= R127), D313 (≠ E316), E341 (= E344), H385 (= H387), R386 (= R388), K411 (= K413)
- binding [3r-[3a,4a,5b(s*)]]-5-(1-carboxy-1-phosphonoethoxy)-4-hydroxy-3-(phosphonooxy)-1-cyclohexene-1-carboxylic acid: K22 (= K31), S23 (= S32), R27 (= R36), G96 (= G99), T97 (= T100), R124 (= R127), S169 (= S173), S170 (= S174), Q171 (= Q175), S197 (= S202), Y200 (≠ H205), D313 (≠ E316), N336 (≠ H339), K340 (≠ H343), E341 (= E344), H385 (= H387), K411 (= K413)
1g6tA Structure of epsp synthase liganded with shikimate-3-phosphate (see paper)
34% identity, 93% coverage: 21:418/427 of query aligns to 12:416/427 of 1g6tA
- active site: K22 (= K31), S23 (= S32), D49 (= D58), N94 (= N97), P119 (= P122), R124 (= R127), D313 (≠ E316), E341 (= E344), H385 (= H387), R386 (= R388), K411 (= K413)
- binding phosphate ion: K22 (= K31), G96 (= G99), T97 (= T100), R124 (= R127), Q171 (= Q175), E341 (= E344), K411 (= K413)
- binding shikimate-3-phosphate: K22 (= K31), S23 (= S32), R27 (= R36), T97 (= T100), S169 (= S173), S170 (= S174), Q171 (= Q175), S197 (= S202), Y200 (≠ H205), D313 (≠ E316), N336 (≠ H339), K340 (≠ H343)
1g6sA Structure of epsp synthase liganded with shikimate-3-phosphate and glyphosate (see paper)
34% identity, 93% coverage: 21:418/427 of query aligns to 12:416/427 of 1g6sA
- active site: K22 (= K31), S23 (= S32), D49 (= D58), N94 (= N97), P119 (= P122), R124 (= R127), D313 (≠ E316), E341 (= E344), H385 (= H387), R386 (= R388), K411 (= K413)
- binding glyphosate: K22 (= K31), G96 (= G99), R124 (= R127), Q171 (= Q175), D313 (≠ E316), E341 (= E344), R344 (= R347), H385 (= H387), R386 (= R388)
- binding shikimate-3-phosphate: K22 (= K31), S23 (= S32), R27 (= R36), T97 (= T100), S169 (= S173), S170 (= S174), Q171 (= Q175), S197 (= S202), Y200 (≠ H205), D313 (≠ E316), N336 (≠ H339), K340 (≠ H343)
P0A6D3 3-phosphoshikimate 1-carboxyvinyltransferase; 5-enolpyruvylshikimate-3-phosphate synthase; EPSP synthase; EPSPS; EC 2.5.1.19 from Escherichia coli (strain K12) (see 8 papers)
34% identity, 93% coverage: 21:418/427 of query aligns to 12:416/427 of P0A6D3
- KS 22:23 (= KS 31:32) binding
- R27 (= R36) binding
- NAGT 94:97 (= NAGT 97:100) Phosphoenolpyruvate
- G96 (= G99) mutation to A: Insensitive to glyphosate with unaltered affinity for its first substrate S3P, but displays a 30-fold lower affinity for its second substrate PEP.
- T97 (= T100) mutation to I: This mutant is sensitive to glyphosate and causes a substantial decrease in the affinity for PEP. Insensitive to glyphosate but maintains high affinity for PEP. It causes a shift of residue G96 toward the glyphosate binding site, impairing efficient binding of glyphosate, while the side chain of I97 points away from the substrate binding site, facilitating PEP utilization; when associated with S-101.
- P101 (≠ F104) mutation to A: Displays a slight decrease of the affinity binding for both S3P and PEP. Decreases the binding affinity of glyphosate, reducing the potency of this inhibitor.; mutation to G: Displays a slight decrease of the affinity binding for both S3P and PEP. Decreases the binding affinity of glyphosate, reducing the potency of this inhibitor.; mutation to L: Displays a 2-fold lower affinity binding for both S3P and PEP. Decreases the binding affinity of glyphosate, reducing the potency of this inhibitor.; mutation to S: Displays a slight decrease of the affinity binding for both S3P and PEP. Decreases the binding affinity of glyphosate, reducing the potency of this inhibitor. Insensitive to glyphosate but maintains high affinity for PEP. It causes a shift of residue G96 toward the glyphosate binding site, impairing efficient binding of glyphosate, while the side chain of I97 points away from the substrate-binding site, facilitating PEP utilization; when associated with I-97.
- R124 (= R127) binding
- SSQ 169:171 (= SSQ 173:175) binding
- S197 (= S202) binding
- D313 (≠ E316) active site, Proton acceptor; mutation to A: The enolpyruvyl transfer reaction is halted after formation of the tetrahedral adduct of the substrates.
- N336 (≠ H339) binding
- K340 (≠ H343) binding
- E341 (= E344) active site, Proton donor
- R344 (= R347) binding
- R386 (= R388) binding
- C408 (≠ T410) Modified by bromopyruvate
- K411 (= K413) Modified by bromopyruvate; binding
7tm5B Crystal structure of shikimate-3-phosphate bound 3-phosphoshikimate 1- carboxyvinyltransferase from klebsiella pneumoniae
34% identity, 93% coverage: 21:418/427 of query aligns to 12:416/427 of 7tm5B
- binding shikimate-3-phosphate: K22 (= K31), S23 (= S32), R27 (= R36), S169 (= S173), S170 (= S174), Q171 (= Q175), S197 (= S202), Y200 (≠ H205), D313 (≠ E316), N336 (≠ H339), K340 (≠ H343)
3fjzA E. Coli epsp synthase (t97i) liganded with s3p and glyphosate (see paper)
33% identity, 93% coverage: 21:418/427 of query aligns to 12:416/427 of 3fjzA
- active site: K22 (= K31), S23 (= S32), D49 (= D58), N94 (= N97), P119 (= P122), R124 (= R127), D313 (≠ E316), E341 (= E344), H385 (= H387), R386 (= R388), K411 (= K413)
- binding N-(phosphonomethyl)glycine: K22 (= K31), G96 (= G99), R124 (= R127), Q171 (= Q175), D313 (≠ E316), E341 (= E344), R344 (= R347), H385 (= H387), R386 (= R388)
- binding shikimate-3-phosphate: K22 (= K31), S23 (= S32), R27 (= R36), I97 (≠ T100), S169 (= S173), S170 (= S174), Q171 (= Q175), S197 (= S202), Y200 (≠ H205), D313 (≠ E316), N336 (≠ H339), K340 (≠ H343)
- binding serine: I265 (≠ W267), G266 (≠ P268), S269 (≠ T271)
7tm6A Crystal structure of shikimate-3-phosphate and glyphosate bound 3- phosphoshikimate 1-carboxyvinyltransferase from klebsiella pneumoniae
34% identity, 93% coverage: 21:418/427 of query aligns to 11:415/426 of 7tm6A
- binding glyphosate: K21 (= K31), G95 (= G99), R123 (= R127), Q170 (= Q175), D312 (≠ E316), E340 (= E344), R343 (= R347), H384 (= H387), R385 (= R388)
- binding shikimate-3-phosphate: S22 (= S32), R26 (= R36), T96 (= T100), S168 (= S173), S169 (= S174), Q170 (= Q175), S196 (= S202), Y199 (≠ H205), D312 (≠ E316), N335 (≠ H339), K339 (≠ H343)
P07547 Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (Aspergillus nidulans) (see 2 papers)
35% identity, 93% coverage: 28:422/427 of query aligns to 412:833/1583 of P07547
Sites not aligning to the query:
- 44:46 binding
- 81:84 binding
- 114:116 binding
- 119 binding
- 139:140 binding
- 161 binding
- 179:182 binding
- 190 binding
- 194 binding
- 271 binding
- 287 binding
Query Sequence
>WP_017596869.1 NCBI__GCF_000341125.1:WP_017596869.1
MPDSSQPTGHHWHAPTAQRPVSARLSLPGSKSVTNRALVLAALSETPCVVRRPLASRDSE
LMIGALRALGVGVTQDGEDLVVTPAALRGPASVDVGNAGTVMRFVPPLAALADGDVHFDG
DPRARERPVDELLNALRALGADIDDGGRGALPMTIHGTGAVPGGEVVLDASGSSQFVSAL
LLSGARFAQGVHVRHQGPPVPSQPHLDMTVEMLRAVGVSVSTGENSWRVEPGPVKATEIT
VEPDLSNAAPFLAAALVSGGEVTIQGWPEHTTQPGDELRSLFTRMGGEVSRSGGDLTLRG
TGQVNGITADLRDVGELTPTIAAVAALADTPSRLTGIAHLRRHETDRIAALAAEINHLGG
DVEELSDGLVIRPRPLHGGVFHSYDDHRMATSGAVIGLSVPGVEVENIATTRKTLPDFPG
LWAEALA
Or try a new SitesBLAST search
SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory