Comparing WP_017597374.1 NCBI__GCF_000341125.1:WP_017597374.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 7 hits to proteins with known functional sites (download)
8hkbA Tpa bound-form of periplasmic terephthalate binding protein (tbp) from ideonella sakaiensis mutant k184d (see paper)
24% identity, 78% coverage: 33:290/330 of query aligns to 2:258/302 of 8hkbA
7ndsA Crystal structure of tphc in a closed conformation (see paper)
25% identity, 87% coverage: 36:321/330 of query aligns to 5:289/294 of 7ndsA
7ndrD Crystal structure of tphc in an open conformation (see paper)
25% identity, 87% coverage: 36:321/330 of query aligns to 5:289/293 of 7ndrD
5okuA R. Palustris rpa4515 with adipate (see paper)
29% identity, 70% coverage: 35:264/330 of query aligns to 6:235/299 of 5okuA
5oeiA R. Palustris rpa4515 with oxoadipate (see paper)
29% identity, 70% coverage: 35:264/330 of query aligns to 6:235/299 of 5oeiA
6hkeB Matc (rpa3494) from rhodopseudomonas palustris with bound malate (see paper)
25% identity, 75% coverage: 45:290/330 of query aligns to 15:260/296 of 6hkeB
Sites not aligning to the query:
2f5xB Structure of periplasmic binding protein bugd (see paper)
21% identity, 78% coverage: 36:292/330 of query aligns to 7:262/300 of 2f5xB
>WP_017597374.1 NCBI__GCF_000341125.1:WP_017597374.1
MRGTSRRAVLAAGFVLPLAAFLPLTGCLPVRGPAELRIMVPTPPGGGYDHTARTIKAVLE
ETGTVSEVTVFNLPGVSGTAALARLVYERGTPGLILQMGLGVLANSHIESASHSATEATP
LARLIEEPEALLVPPDSPFDTIDDMARAWRADPSSVVIGGGSTPGGPDHMVTMLLAEELG
IDPAEVDYRTYDGGGPMQAALLSHEVSVAAAGPSEQRAAIDSGQLRVLAVTGADPDPGTD
APTLAEAGIPLHFLNWRGLLAPPGLSAADREELLAVVATLHDSPEWRAELERNRWTDAYL
EGAEFAAFLAEEEERVGTALNRLGFADGGD
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory