Comparing WP_017597377.1 NCBI__GCF_000341125.1:WP_017597377.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 7 hits to proteins with known functional sites (download)
8hkbA Tpa bound-form of periplasmic terephthalate binding protein (tbp) from ideonella sakaiensis mutant k184d (see paper)
24% identity, 90% coverage: 34:324/324 of query aligns to 5:294/302 of 8hkbA
2dvzA Structure of a periplasmic transporter (see paper)
29% identity, 72% coverage: 30:262/324 of query aligns to 3:236/300 of 2dvzA
7ndsA Crystal structure of tphc in a closed conformation (see paper)
25% identity, 67% coverage: 31:246/324 of query aligns to 2:215/294 of 7ndsA
Sites not aligning to the query:
7ndrD Crystal structure of tphc in an open conformation (see paper)
25% identity, 67% coverage: 31:246/324 of query aligns to 2:215/293 of 7ndrD
5okuA R. Palustris rpa4515 with adipate (see paper)
27% identity, 77% coverage: 30:279/324 of query aligns to 3:252/299 of 5okuA
5oeiA R. Palustris rpa4515 with oxoadipate (see paper)
27% identity, 77% coverage: 30:279/324 of query aligns to 3:252/299 of 5oeiA
2f5xB Structure of periplasmic binding protein bugd (see paper)
25% identity, 91% coverage: 30:324/324 of query aligns to 3:298/300 of 2f5xB
>WP_017597377.1 NCBI__GCF_000341125.1:WP_017597377.1
AAAAAVLPLALSACGGEDGGNTNADGTWEPNGPIEITAPAGTGGGWDTLARTSARLLESE
GLVDQSIQVVNKPGAGGAIGWAYIAGNEGDPQKLFVTSPPILLVPMAGDSEYDHEDFTPI
ARLATDYIVYLVPADSELETFDDLVETVDEGDANIGGGSAPGSMDHVALAGAIDAAGGNA
AAASYVPFDGGGEAMTALLGGHVDAAVVGVSEAAGMLEAGELRALAVSSPEPVEAIADVP
TLLDQDVDFTFDIWRGVMAPSGLDEAQVTYYEDLFADLLETQAWQEESASLGWTDAYQNS
ADFGAFLDEKRSEFTEILTEVGLQ
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory