Comparing WP_018436371.1 NCBI__GCF_000092885.1:WP_018436371.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
2h3hA Crystal structure of the liganded form of thermotoga maritima glucose binding protein (see paper)
31% identity, 89% coverage: 37:329/330 of query aligns to 12:294/313 of 2h3hA
Sites not aligning to the query:
3c6qC Apo and ligand-bound form of a thermophilic glucose/xylose binding protein
31% identity, 89% coverage: 37:329/330 of query aligns to 12:294/305 of 3c6qC
Sites not aligning to the query:
5hqjA Crystal structure of abc transporter solute binding protein b1g1h7 from burkholderia graminis c4d1m, target efi-511179, in complex with d-arabinose
30% identity, 93% coverage: 23:329/330 of query aligns to 4:289/289 of 5hqjA
6guqA Crystal structure of ganp, a glucose-galactose binding protein from geobacillus stearothermophilus, in complex with glucose
27% identity, 90% coverage: 28:323/330 of query aligns to 4:275/278 of 6guqA
6gt9A Crystal structure of ganp, a glucose-galactose binding protein from geobacillus stearothermophilus, in complex with galactose
27% identity, 90% coverage: 28:323/330 of query aligns to 9:280/283 of 6gt9A
4rxtA Crystal structure of carbohydrate transporter solute binding protein arad_9553 from agrobacterium radiobacter, target efi-511541, in complex with d-arabinose
25% identity, 91% coverage: 24:323/330 of query aligns to 3:284/295 of 4rxtA
5xssA Xylfii molecule (see paper)
27% identity, 82% coverage: 37:307/330 of query aligns to 15:261/274 of 5xssA
Sites not aligning to the query:
5dkvA Crystal structure of an abc transporter solute binding protein from agrobacterium vitis(avis_5339, target efi-511225) bound with alpha-d- tagatopyranose
24% identity, 75% coverage: 75:323/330 of query aligns to 52:290/303 of 5dkvA
Sites not aligning to the query:
2ioyA Crystal structure of thermoanaerobacter tengcongensis ribose binding protein (see paper)
23% identity, 90% coverage: 26:323/330 of query aligns to 1:272/274 of 2ioyA
3ksmA Crystal structure of abc-type sugar transport system, periplasmic component from hahella chejuensis
27% identity, 88% coverage: 28:316/330 of query aligns to 3:271/276 of 3ksmA
5dteB Crystal structure of an abc transporter periplasmic solute binding protein (ipr025997) from actinobacillus succinogenes 130z(asuc_0081, target efi-511065) with bound d-allose
27% identity, 60% coverage: 28:225/330 of query aligns to 5:192/287 of 5dteB
Sites not aligning to the query:
7x0hA Crystal structure of sugar binding protein cbpa complexed wtih glucose from clostridium thermocellum (see paper)
25% identity, 90% coverage: 28:325/330 of query aligns to 12:283/287 of 7x0hA
1dbpA Identical mutations at corresponding positions in two homologous proteins with non-identical effects (see paper)
25% identity, 85% coverage: 27:308/330 of query aligns to 3:257/271 of 1dbpA
4wutA Crystal structure of an abc transporter solute binding protein (ipr025997) from agrobacterium vitis (avi_5133, target efi-511220) with bound d-fucose
25% identity, 90% coverage: 28:325/330 of query aligns to 3:281/290 of 4wutA
4zjpA Structure of an abc-transporter solute binding protein (sbp_ipr025997) from actinobacillus succinogenes (asuc_0197, target efi-511067) with bound beta-d-ribopyranose
23% identity, 89% coverage: 26:320/330 of query aligns to 3:269/270 of 4zjpA
8wlbA X-ray structure of enterobacter cloacae allose-binding protein in complex with d-psicose (see paper)
25% identity, 87% coverage: 29:314/330 of query aligns to 5:275/288 of 8wlbA
8wl9A X-ray structure of enterobacter cloacae allose-binding protein in complex with d-ribose (see paper)
25% identity, 87% coverage: 29:314/330 of query aligns to 5:275/288 of 8wl9A
1rpjA Crystal structure of d-allose binding protein from escherichia coli (see paper)
24% identity, 85% coverage: 29:309/330 of query aligns to 5:271/288 of 1rpjA
1gudA Hinge-bending motion of d-allose binding protein from escherichia coli: three open conformations (see paper)
24% identity, 85% coverage: 29:309/330 of query aligns to 5:271/288 of 1gudA
Sites not aligning to the query:
4pz0A The crystal structure of a solute binding protein from bacillus anthracis str. Ames in complex with quorum-sensing signal autoinducer-2 (ai-2)
26% identity, 47% coverage: 42:197/330 of query aligns to 21:178/321 of 4pz0A
Sites not aligning to the query:
>WP_018436371.1 NCBI__GCF_000092885.1:WP_018436371.1
MKKLLMCLAAAGGLAMLASPGFAADKTLALVVKGLDNPYFDLMHQGCERANKELNKQGYN
CYYTGPATAADESAQVQIIDDLLTKGVASMAISPANAPAVAEVLRRRGGSVPVITADADL
LPKDASLRKSYVGTDNYELGAKLGEQLKMLMPKGGKVCLVMGNPAAENINQRAQGARDVL
SGKKGITKLAGENGWQEISGCPLYVNDDAAKANQMMQDTLTANPTGLDAFLLAGGWPLFA
PQAFSQVVAPIMDKIKNGKFVIVSADTLGPELQALKDRKVNVLVGQRPEEMGYRAAMVMR
DLAEGKSVPPVIHTGLDVCTWKNADTCLKH
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory