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Comparing WP_019556118.1 NCBI__GCF_000381085.1:WP_019556118.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
5i92F Crystal structure of glutamate-1-semialdehyde 2,1- aminomutase (gsa) from pseudomonas aeruginosa
67% identity, 100% coverage: 1:424/426 of query aligns to 1:419/420 of 5i92F
Sites not aligning to the query:
P23893 Glutamate-1-semialdehyde 2,1-aminomutase; GSA; Glutamate-1-semialdehyde aminotransferase; GSA-AT; EC 5.4.3.8 from Escherichia coli (strain K12) (see paper)
63% identity, 100% coverage: 1:426/426 of query aligns to 1:426/426 of P23893
- K265 (= K265) mutation to R: 2% of wild-type activity.
6w80A Crystal structure of glutamate-1-semialdehyde 2,1-aminomutase from stenotrophomonas maltophilia k279a in complex with plp
60% identity, 97% coverage: 3:416/426 of query aligns to 10:419/430 of 6w80A
- active site: V26 (= V19), Y149 (= Y142), D241 (= D237), K269 (= K265)
- binding pyridoxal-5'-phosphate: S121 (= S114), G122 (= G115), T123 (= T116), Y149 (= Y142), H150 (= H143), E208 (= E204), N213 (= N209), D241 (= D237), V243 (= V239), K269 (= K265)
2gsaB Crystal structure of glutamate-1-semialdehyde aminomutase (aminotransferase, wild-type form) (see paper)
57% identity, 100% coverage: 3:426/426 of query aligns to 5:427/427 of 2gsaB
- active site: V21 (= V19), Y144 (= Y142), E206 (= E204), D239 (= D237), M242 (= M240), K267 (= K265), A401 (= A400)
- binding pyridoxal-5'-phosphate: G117 (= G115), T118 (= T116), Y144 (= Y142), E206 (= E204), N211 (= N209), D239 (= D237), V241 (= V239), M242 (= M240), K267 (= K265)
2gsaA Crystal structure of glutamate-1-semialdehyde aminomutase (aminotransferase, wild-type form) (see paper)
57% identity, 100% coverage: 3:426/426 of query aligns to 5:427/427 of 2gsaA
- active site: V21 (= V19), Y144 (= Y142), E206 (= E204), D239 (= D237), M242 (= M240), K267 (= K265), A401 (= A400)
- binding 4'-deoxy-4'-aminopyridoxal-5'-phosphate: G117 (= G115), T118 (= T116), Y144 (= Y142), H145 (= H143), G146 (= G144), N211 (= N209), D239 (= D237), V241 (= V239), K267 (= K265)
3usfA Crystal structure of dava-4
57% identity, 100% coverage: 3:426/426 of query aligns to 5:427/427 of 3usfA
- active site: V21 (= V19), Y144 (= Y142), D239 (= D237), M242 (= M240), K267 (= K265), A401 (= A400)
- binding (4s)-4,5-diaminopentanoic acid: S23 (= S21), V25 (= V23), S157 (= S155), K267 (= K265), E400 (= E399)
- binding (5-hydroxy-4,6-dimethylpyridin-3-yl)methyl dihydrogen phosphate: G117 (= G115), T118 (= T116), Y144 (= Y142), N211 (= N209), D239 (= D237), V241 (= V239), K267 (= K265)
3fq7A Gabaculine complex of gsam (see paper)
57% identity, 100% coverage: 3:426/426 of query aligns to 5:427/427 of 3fq7A
- active site: V21 (= V19), Y144 (= Y142), D239 (= D237), M242 (= M240), K267 (= K265), A401 (= A400)
- binding 3-[o-phosphonopyridoxyl]--amino-benzoic acid: S23 (= S21), V25 (= V23), W61 (= W59), G117 (= G115), T118 (= T116), Y144 (= Y142), H145 (= H143), E206 (= E204), N211 (= N209), D239 (= D237), V241 (= V239), M242 (= M240), K267 (= K265), G298 (= G296), T299 (= T297), E400 (= E399)
2hp2A Inter-subunit signaling in gsam (see paper)
57% identity, 100% coverage: 3:426/426 of query aligns to 5:427/427 of 2hp2A
- active site: V21 (= V19), Y144 (= Y142), D239 (= D237), M242 (= M240), K267 (= K265), A401 (= A400)
- binding (4s)-4,5-diaminopentanoic acid: G298 (= G296), T299 (= T297)
- binding (4r)-5-amino-4-[({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)amino]pentanoic acid: S23 (= S21), G117 (= G115), T118 (= T116), Y144 (= Y142), H145 (= H143), E206 (= E204), N211 (= N209), D239 (= D237), V241 (= V239), M242 (= M240), K267 (= K265)
- binding pyridoxal-5'-phosphate: G298 (= G296), T299 (= T297)
2hp1A Inter-subunit signaling in gsam (see paper)
57% identity, 100% coverage: 3:426/426 of query aligns to 5:427/427 of 2hp1A
- active site: V21 (= V19), Y144 (= Y142), D239 (= D237), M242 (= M240), K267 (= K265), A401 (= A400)
- binding (4s)-4-amino-5-[({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)amino]pentanoic acid: S23 (= S21), V25 (= V23), W61 (= W59), S116 (= S114), G117 (= G115), T118 (= T116), Y144 (= Y142), H145 (= H143), G146 (= G144), E206 (= E204), N211 (= N209), D239 (= D237), V241 (= V239), M242 (= M240), K267 (= K265), E400 (= E399)
2hozA Inter-subunit signaling in gsam (see paper)
57% identity, 100% coverage: 3:426/426 of query aligns to 5:427/427 of 2hozA
- active site: V21 (= V19), Y144 (= Y142), D239 (= D237), M242 (= M240), K267 (= K265), A401 (= A400)
- binding (4s)-4,5-diaminopentanoic acid: E141 (= E139), G156 (= G154), S157 (= S155), P182 (≠ T180), N368 (≠ R367), E370 (≠ S369), K373 (≠ A372)
- binding 4'-deoxy-4'-aminopyridoxal-5'-phosphate: G117 (= G115), T118 (= T116), Y144 (= Y142), H145 (= H143), G146 (= G144), E206 (= E204), N211 (= N209), D239 (= D237), G298 (= G296), T299 (= T297)
3fqaA Gabaculien complex of gabaculine resistant gsam version (see paper)
57% identity, 100% coverage: 3:426/426 of query aligns to 4:426/426 of 3fqaA
- active site: V20 (= V19), Y143 (= Y142), D238 (= D237), I241 (≠ M240), K266 (= K265), A400 (= A400)
- binding 3-aminobenzoic acid: S22 (= S21), R25 (= R24), W60 (= W59)
- binding 4'-deoxy-4'-aminopyridoxal-5'-phosphate: G116 (= G115), T117 (= T116), Y143 (= Y142), E205 (= E204), N210 (= N209), D238 (= D237), V240 (= V239), I241 (≠ M240)
3bs8A Crystal structure of glutamate 1-semialdehyde aminotransferase complexed with pyridoxamine-5'-phosphate from bacillus subtilis (see paper)
55% identity, 100% coverage: 3:426/426 of query aligns to 6:427/430 of 3bs8A
- active site: V22 (= V19), Y145 (= Y142), E207 (= E204), D240 (= D237), M243 (= M240), K268 (= K265), G401 (≠ A400)
- binding 4'-deoxy-4'-aminopyridoxal-5'-phosphate: G118 (= G115), T119 (= T116), Y145 (= Y142), H146 (= H143), E207 (= E204), N212 (= N209), D240 (= D237), V242 (= V239), K268 (= K265)
3k28A Crystal structure of a glutamate-1-semialdehyde aminotransferase from bacillus anthracis with bound pyridoxal 5'phosphate
55% identity, 100% coverage: 3:426/426 of query aligns to 6:422/423 of 3k28A
- active site: V22 (= V19), Y145 (= Y142), E202 (= E204), D235 (= D237), M238 (= M240), K263 (= K265), G396 (≠ A400)
- binding calcium ion: I103 (≠ C100), V106 (≠ I103), P107 (= P104), I109 (≠ M106)
- binding pyridoxal-5'-phosphate: G118 (= G115), T119 (= T116), Y145 (= Y142), H146 (= H143), G147 (= G144), E202 (= E204), D235 (= D237), V237 (= V239), M238 (= M240), K263 (= K265)
Q42522 Glutamate-1-semialdehyde 2,1-aminomutase 2, chloroplastic; GSA 2; Glutamate-1-semialdehyde aminotransferase 2; GSA-AT 2; EC 5.4.3.8 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
53% identity, 100% coverage: 1:426/426 of query aligns to 48:472/472 of Q42522
- R92 (≠ T45) mutation to K: In gsa2-1; suppression of enf1 mutant pleiotropic developmental phenotypes; when associated with S-162.
- G162 (= G115) mutation to S: In gsa2-1; suppression of enf1 mutant pleiotropic developmental phenotypes; when associated with K-92.
P42799 Glutamate-1-semialdehyde 2,1-aminomutase 1, chloroplastic; AtGSA1; GSA 1; Glutamate-1-semialdehyde aminotransferase 1; GSA-AT 1; EC 5.4.3.8 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
52% identity, 100% coverage: 1:426/426 of query aligns to 50:474/474 of P42799
- K314 (= K265) modified: N6-(pyridoxal phosphate)lysine
5hdmB Crystal structure of arabidopsis thaliana glutamate-1-semialdehyde-2, 1-aminomutase (see paper)
52% identity, 100% coverage: 1:426/426 of query aligns to 4:428/428 of 5hdmB
- active site: V22 (= V19), Y145 (= Y142), E207 (= E204), D240 (= D237), M243 (= M240), K268 (= K265), A402 (= A400)
- binding pyridoxal-5'-phosphate: G118 (= G115), T119 (= T116), Y145 (= Y142), E207 (= E204), N212 (= N209), D240 (= D237), V242 (= V239), M243 (= M240), K268 (= K265)
- binding 4'-deoxy-4'-aminopyridoxal-5'-phosphate: G118 (= G115), T119 (= T116), Y145 (= Y142), E207 (= E204), N212 (= N209), D240 (= D237), V242 (= V239), M243 (= M240), K268 (= K265)
5hdmA Crystal structure of arabidopsis thaliana glutamate-1-semialdehyde-2, 1-aminomutase (see paper)
52% identity, 100% coverage: 1:426/426 of query aligns to 4:428/428 of 5hdmA
- active site: V22 (= V19), Y145 (= Y142), E207 (= E204), D240 (= D237), M243 (= M240), K268 (= K265), A402 (= A400)
- binding 4'-deoxy-4'-aminopyridoxal-5'-phosphate: G118 (= G115), T119 (= T116), Y145 (= Y142), G147 (= G144), E207 (= E204), N212 (= N209), D240 (= D237), V242 (= V239), K268 (= K265)
2e7uA Crystal structure of glutamate-1-semialdehyde 2,1-aminomutase from thermus thermophilus hb8
53% identity, 99% coverage: 4:423/426 of query aligns to 6:424/424 of 2e7uA
- active site: V21 (= V19), Y144 (= Y142), E206 (= E204), D238 (= D237), M241 (= M240), K266 (= K265), A401 (= A400)
- binding 4'-deoxy-4'-aminopyridoxal-5'-phosphate: G117 (= G115), T118 (= T116), Y144 (= Y142), H145 (= H143), N211 (= N209), D238 (= D237), V240 (= V239)
3usfB Crystal structure of dava-4
53% identity, 100% coverage: 3:426/426 of query aligns to 5:402/402 of 3usfB
- active site: V21 (= V19), Y144 (= Y142), E181 (= E204), D214 (= D237), M217 (= M240), K242 (= K265), A376 (= A400)
- binding (4s)-4,5-diaminopentanoic acid: G273 (= G296), T274 (= T297)
- binding (5-hydroxy-4,6-dimethylpyridin-3-yl)methyl dihydrogen phosphate: G117 (= G115), T118 (= T116), Y144 (= Y142), E181 (= E204), N186 (= N209), D214 (= D237), V216 (= V239), M217 (= M240), K242 (= K265)
2hp1B Inter-subunit signaling in gsam (see paper)
52% identity, 100% coverage: 3:426/426 of query aligns to 5:398/398 of 2hp1B
- active site: V21 (= V19), Y144 (= Y142), E177 (= E204), D210 (= D237), M213 (= M240), K238 (= K265), A372 (= A400)
- binding (4s)-4-amino-5-[({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)amino]pentanoic acid: G269 (= G296), T270 (= T297)
- binding (4s)-4,5-diaminopentanoic acid: S23 (= S21), V25 (= V23), R26 (= R24), W61 (= W59), Y144 (= Y142)
- binding pyridoxal-5'-phosphate: S116 (= S114), G117 (= G115), T118 (= T116), Y144 (= Y142), E177 (= E204), N182 (= N209), D210 (= D237), V212 (= V239), M213 (= M240), K238 (= K265)
Query Sequence
>WP_019556118.1 NCBI__GCF_000381085.1:WP_019556118.1
MSKSHDLFEAAQQHIPGGVNSPVRAFKGVGGDPVFFKTAKGAYLTDVDDKVYIDYVASWG
PAILGHAHPDVVKAVQQQAEKGLSFGAPTALETEMADLVCELIPSMDMVRMVSSGTEATM
TAIRLARGYTGRDKIVKFEGCYHGHSDSLLVKAGSGALTLGVPSSPGVPDSLAELTLTLT
HNDAEEVRKVFAEVGEQIACIIVEPIAGNMNCIPPEPGFLETLREVCDASGAVLIFDEVM
CGFRAGLQGAQGLYNITPDLTTFGKVIGGGMPLASFGGKREIMQHIAPLGPVYQAGTLSG
NPIAMAAGLMTLNLIKQAGFFENLDTKAKRLTTGMQAVADELGIPFTTNQVGGMFGLFFS
EEKNISRFSQVAKGNLEHFKAFYHGMLDEGVYLAPSAYEAGFVSSQHTDADIDNTIAAAR
KVMATL
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SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory