Comparing WP_019556676.1 NCBI__GCF_000381085.1:WP_019556676.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 10 hits to proteins with known functional sites (download)
4lhdA Crystal structure of synechocystis sp. Pcc 6803 glycine decarboxylase (p-protein), holo form with pyridoxal-5'-phosphate and glycine, closed flexible loop (see paper)
60% identity, 97% coverage: 15:960/973 of query aligns to 11:949/952 of 4lhdA
Sites not aligning to the query:
6i34B Crystal structure of neanderthal glycine decarboxylase (p-protein)
56% identity, 97% coverage: 17:962/973 of query aligns to 7:954/954 of 6i34B
6i33A Crystal structure of human glycine decarboxylase (p-protein)
57% identity, 97% coverage: 17:963/973 of query aligns to 9:950/950 of 6i33A
6i35A Crystal structure of human glycine decarboxylase (p-protein) bound with pyridoxyl-glycine-5'-monophosphate
56% identity, 97% coverage: 17:963/973 of query aligns to 9:953/953 of 6i35A
Q94B78 Glycine dehydrogenase (decarboxylating) 1, mitochondrial; Glycine cleavage system P protein 1; Glycine decarboxylase 1; Glycine decarboxylase P-protein 1; AtGLDP1; Glycine dehydrogenase (aminomethyl-transferring) 1; EC 1.4.4.2 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
56% identity, 98% coverage: 8:962/973 of query aligns to 64:1026/1037 of Q94B78
P15505 Glycine dehydrogenase (decarboxylating), mitochondrial; Glycine cleavage system P protein; Glycine decarboxylase; Glycine dehydrogenase (aminomethyl-transferring); EC 1.4.4.2 from Gallus gallus (Chicken) (see paper)
55% identity, 99% coverage: 8:966/973 of query aligns to 38:992/1004 of P15505
6i33B Crystal structure of human glycine decarboxylase (p-protein)
55% identity, 97% coverage: 17:962/973 of query aligns to 7:925/925 of 6i33B
1wyuB Crystal structure of glycine decarboxylase (p-protein) of the glycine cleavage system, in holo form (see paper)
40% identity, 46% coverage: 472:918/973 of query aligns to 26:458/473 of 1wyuB
1wyvA Crystal structure of glycine decarboxylase (p-protein) of the glycine cleavage system, in inhibitor-bound form (see paper)
37% identity, 40% coverage: 32:420/973 of query aligns to 8:399/437 of 1wyvA
1wyuA Crystal structure of glycine decarboxylase (p-protein) of the glycine cleavage system, in holo form (see paper)
37% identity, 40% coverage: 32:420/973 of query aligns to 8:399/437 of 1wyuA
>WP_019556676.1 NCBI__GCF_000381085.1:WP_019556676.1
MSQATLSQLADCSLEELQQSDKFITRHLGPDDDEQLAMLRSLKMASLNELLDKVVPSSIR
RHDPMDLAEGLTEQQSLEKLKAIASKNIVLKSYIGMGYYNTFTPPTIQRNILENPAWYTA
YTPYQAEISQGRLEAMLNFQTMVSDLTGLELANASLLDEATACAEAMTLCQRMSKSKGKV
FFVADDCHPQNIEVIQTRAEPLGIEVVVGNPINELADYDLFGVLLQYPGTYGEVSDFSEL
IEKIHAKKALVAMSADLLALTLLKTPGEMGADVAIGNTQRFGVPLGYGGPHAAYMATKDD
FKRSMPGRLIGVSVDSRGKKAYRLALQTREQHIRREKATSNICTAQALLAVMASMYAVYH
GPVGLTKIAYRVHRYTQLFANGLTQLGFKVNNKVYFDTLNIFVPGKAVAIQQAAVDKGIN
LRPIDADTVGLSFDESSTLQDITVLWEVFAGEQAVSLKAEVLMKDQPPVIGEDLLRTSEF
LTHPVFHEHRSETQMMRYMRCLADKDLALDRAMIPLGSCTMKLNAAAELMPISWPEFANL
HPFVPLNQALGYQQMVLELEKMLCEATGYDAVSLQPNSGAQGEYAGLLAIRAYHKSRGEG
HRDVCLIPASAHGTNPASAQMVGMSVVVVKTNLKGEIDLADLHAKLEKHSAKLAAIMITY
PSTHGVFEENVKTVCDLVHQHGGQVYIDGANMNAMVGVAAPGQFGGDVSHLNLHKTFAIP
HGGGGPGVGPIGVGKHLKPFLPGYAVVNSEDEPKVVGAVSAAPWGSAGVLPISWSYIAMM
GSNGLVQATATAILNANYIAHSLAPHYPILYSDDQGRVAHECIIDLRPIKEASGITVDDI
AKRLIDYGFHAPTMSFPVAGTFMIEPTESESKVELDRFCDAMIAIKAEINDVMSGVLDEH
DNPLKNAPHTADMVMADEWNHAYSRQLAAYPVESLREVKYWCPVGRVDNVYGDRHLVCSC
PPLSDYSEVGGVL
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory