Comparing WP_019557492.1 NCBI__GCF_000381085.1:WP_019557492.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
6qp3A Crystal structure of the plp-bound c-s lyase from bacillus subtilis (strain 168) (see paper)
42% identity, 95% coverage: 18:396/400 of query aligns to 9:387/387 of 6qp3A
4dq6A Crystal structure of plp-bound putative aminotransferase from clostridium difficile 630
36% identity, 97% coverage: 8:394/400 of query aligns to 1:386/388 of 4dq6A
3b1eA Crystal structure of betac-s lyase from streptococcus anginosus in complex with l-serine: alpha-aminoacrylate form (see paper)
38% identity, 89% coverage: 38:391/400 of query aligns to 28:381/387 of 3b1eA
3b1dA Crystal structure of betac-s lyase from streptococcus anginosus in complex with l-serine: external aldimine form (see paper)
38% identity, 89% coverage: 38:391/400 of query aligns to 28:381/387 of 3b1dA
3b1cA Crystal structure of betac-s lyase from streptococcus anginosus: internal aldimine form (see paper)
38% identity, 89% coverage: 38:391/400 of query aligns to 28:381/387 of 3b1cA
3l8aB Crystal structure of metc from streptococcus mutans
39% identity, 89% coverage: 37:391/400 of query aligns to 26:379/385 of 3l8aB
1c7oA Crystal structure of cystalysin from treponema denticola contains a pyridoxal 5'-phosphate-l-aminoethoxyvinylglycine complex (see paper)
32% identity, 90% coverage: 37:394/400 of query aligns to 32:389/394 of 1c7oA
Sites not aligning to the query:
1c7nA Crystal structure of cystalysin from treponema denticola contains a pyridoxal 5'-phosphate cofactor (see paper)
32% identity, 90% coverage: 37:394/400 of query aligns to 32:389/394 of 1c7nA
7qugA Crystal structure of carbon-sulfur lyase fnapatb1 from fusobacterium nucleatum subspecies animalis in complex with allyl-cysteine (see paper)
33% identity, 91% coverage: 33:396/400 of query aligns to 36:395/397 of 7qugA
Sites not aligning to the query:
5z0qC Crystal structure of ovob (see paper)
33% identity, 97% coverage: 12:397/400 of query aligns to 3:377/379 of 5z0qC
8bobA Structural basis for negative regulation of the maltose system (see paper)
30% identity, 97% coverage: 11:397/400 of query aligns to 3:388/390 of 8bobA
P23256 Protein MalY; EC 4.4.1.13 from Escherichia coli (strain K12) (see 2 papers)
30% identity, 97% coverage: 11:397/400 of query aligns to 3:388/390 of P23256
6qp1B Crystal structure of the plp-bound c-s lyase in the external aldimine form from staphylococcus hominis complexed with an inhibitor, l- cycloserine. (see paper)
31% identity, 90% coverage: 35:394/400 of query aligns to 43:396/398 of 6qp1B
6qp2A Crystal structure of the plp-bound c-s lyase from staphylococcus hominis (see paper)
31% identity, 90% coverage: 37:394/400 of query aligns to 21:377/383 of 6qp2A
Sites not aligning to the query:
1gdeA Crystal structure of pyrococcus protein a-1 e-form (see paper)
25% identity, 90% coverage: 34:392/400 of query aligns to 23:379/388 of 1gdeA
1gd9A Crystall structure of pyrococcus protein-a1 (see paper)
25% identity, 90% coverage: 34:392/400 of query aligns to 23:379/388 of 1gd9A
5wmhA Arabidopsis thaliana prephenate aminotransferase (see paper)
23% identity, 89% coverage: 38:394/400 of query aligns to 31:395/399 of 5wmhA
5wmiA Arabidopsis thaliana prephenate aminotransferase mutant- t84v (see paper)
23% identity, 89% coverage: 38:394/400 of query aligns to 31:395/402 of 5wmiA
Sites not aligning to the query:
5wmlA Arabidopsis thaliana prephenate aminotransferase mutant- k306a (see paper)
23% identity, 89% coverage: 38:394/400 of query aligns to 32:396/404 of 5wmlA
Sites not aligning to the query:
1o4sB Crystal structure of aspartate aminotransferase (tm1255) from thermotoga maritima at 1.90 a resolution (see paper)
27% identity, 89% coverage: 36:392/400 of query aligns to 37:379/384 of 1o4sB
>WP_019557492.1 NCBI__GCF_000381085.1:WP_019557492.1
MQAPLNDFNDELNQTISREGSYAEKYALREALFGTEDVLPMWVADMDLPTPSFILDALKK
RLQHPLLGYTVTPEPVYQAIIDWQAHHHYHITTSQIVFTHNVANGFHMAVSAFTQPGDSV
LVQPPIYPPFLQAPKLNDRTLVETPLVRLNHQYQIDFAAFETAIVDNQVKLFLFCNPHNP
VGRVWLRSELEQIAEICVRHNVIIVSDEIHSDLVYDGQQHVPIASLSPEVANITVTLSSP
GKTFNLGGLQIGYALIANPQLKTAYLSIANSVSIHNLNLFAMIALQSAYSKQGFTWKEDL
LKHFTQNLDTVENFVKEFLPLVTFSRPQASYLIWLDFREMFDDQETLKNWLVQKAKLGLN
DGLAFGEAGKGFMRMNIAVSKPALLKALKQLETAASAYIR
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory